Experiment: Survival; Treatment=FW300; TreatmentDuration=2hrs; Outgrowth=R2A_Kan10_Lactate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABCV34_RS03435 and ABCV34_RS03440 are separated by 62 nucleotides ABCV34_RS03440 and ABCV34_RS03445 are separated by 192 nucleotides ABCV34_RS03445 and ABCV34_RS03450 overlap by 4 nucleotides ABCV34_RS03450 and ABCV34_RS03455 are separated by 95 nucleotides
ABCV34_RS03435: ABCV34_RS03435 - SRPBCC family protein, at 756,362 to 756,862
_RS03435
ABCV34_RS03440: ABCV34_RS03440 - hypothetical protein, at 756,925 to 757,605
_RS03440
ABCV34_RS03445: ABCV34_RS03445 - ABC transporter permease subunit, at 757,798 to 758,481
_RS03445
ABCV34_RS03450: ABCV34_RS03450 - ABC transporter permease subunit, at 758,478 to 759,194
_RS03450
ABCV34_RS03455: ABCV34_RS03455 - transporter substrate-binding domain-containing protein, at 759,290 to 760,105
_RS03455
Position (kb) 757
758
759 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 756.818 kb on + strand at 756.818 kb on + strand at 756.818 kb on + strand at 756.818 kb on + strand at 756.819 kb on - strand at 756.819 kb on - strand at 756.819 kb on - strand at 756.819 kb on - strand at 756.839 kb on + strand at 756.840 kb on - strand at 756.840 kb on - strand at 756.840 kb on - strand at 756.860 kb on + strand at 756.891 kb on + strand at 756.892 kb on - strand at 756.892 kb on - strand at 756.934 kb on + strand at 756.934 kb on + strand at 756.934 kb on + strand at 756.934 kb on + strand at 756.934 kb on + strand at 756.934 kb on + strand at 756.935 kb on - strand at 756.935 kb on - strand at 756.935 kb on - strand at 756.935 kb on - strand at 756.935 kb on - strand at 756.935 kb on - strand at 756.935 kb on - strand at 757.142 kb on + strand, within ABCV34_RS03440 at 757.142 kb on + strand, within ABCV34_RS03440 at 757.142 kb on + strand, within ABCV34_RS03440 at 757.142 kb on + strand, within ABCV34_RS03440 at 757.143 kb on - strand, within ABCV34_RS03440 at 757.143 kb on - strand, within ABCV34_RS03440 at 757.143 kb on - strand, within ABCV34_RS03440 at 757.143 kb on - strand, within ABCV34_RS03440 at 757.143 kb on - strand, within ABCV34_RS03440 at 757.143 kb on - strand, within ABCV34_RS03440 at 757.311 kb on - strand, within ABCV34_RS03440 at 757.311 kb on - strand, within ABCV34_RS03440 at 757.395 kb on - strand, within ABCV34_RS03440 at 757.406 kb on + strand, within ABCV34_RS03440 at 757.406 kb on + strand, within ABCV34_RS03440 at 757.406 kb on + strand, within ABCV34_RS03440 at 757.406 kb on + strand, within ABCV34_RS03440 at 757.407 kb on - strand, within ABCV34_RS03440 at 757.407 kb on - strand, within ABCV34_RS03440 at 757.407 kb on - strand, within ABCV34_RS03440 at 757.407 kb on - strand, within ABCV34_RS03440 at 757.433 kb on + strand, within ABCV34_RS03440 at 757.433 kb on + strand, within ABCV34_RS03440 at 757.433 kb on + strand, within ABCV34_RS03440 at 757.433 kb on + strand, within ABCV34_RS03440 at 757.433 kb on + strand, within ABCV34_RS03440 at 757.433 kb on + strand, within ABCV34_RS03440 at 757.433 kb on + strand, within ABCV34_RS03440 at 757.433 kb on + strand, within ABCV34_RS03440 at 757.434 kb on - strand, within ABCV34_RS03440 at 757.434 kb on - strand, within ABCV34_RS03440 at 757.434 kb on - strand, within ABCV34_RS03440 at 757.434 kb on - strand, within ABCV34_RS03440 at 757.434 kb on - strand, within ABCV34_RS03440 at 757.434 kb on - strand, within ABCV34_RS03440 at 757.434 kb on - strand, within ABCV34_RS03440 at 757.434 kb on - strand, within ABCV34_RS03440 at 757.434 kb on - strand, within ABCV34_RS03440 at 757.434 kb on - strand, within ABCV34_RS03440 at 757.434 kb on - strand, within ABCV34_RS03440 at 757.434 kb on - strand, within ABCV34_RS03440 at 757.434 kb on - strand, within ABCV34_RS03440 at 757.434 kb on - strand, within ABCV34_RS03440 at 757.597 kb on + strand at 757.597 kb on + strand at 757.597 kb on + strand at 757.597 kb on + strand at 757.597 kb on + strand at 757.597 kb on + strand at 757.597 kb on + strand at 757.598 kb on - strand at 757.598 kb on - strand at 757.598 kb on - strand at 757.598 kb on - strand at 757.598 kb on - strand at 757.598 kb on - strand at 757.598 kb on - strand at 757.679 kb on - strand at 757.874 kb on + strand, within ABCV34_RS03445 at 757.874 kb on + strand, within ABCV34_RS03445 at 757.874 kb on + strand, within ABCV34_RS03445 at 757.874 kb on + strand, within ABCV34_RS03445 at 757.874 kb on + strand, within ABCV34_RS03445 at 757.875 kb on - strand, within ABCV34_RS03445 at 757.875 kb on - strand, within ABCV34_RS03445 at 757.913 kb on + strand, within ABCV34_RS03445 at 757.913 kb on + strand, within ABCV34_RS03445 at 757.913 kb on + strand, within ABCV34_RS03445 at 757.914 kb on - strand, within ABCV34_RS03445 at 757.914 kb on - strand, within ABCV34_RS03445 at 757.914 kb on - strand, within ABCV34_RS03445 at 757.914 kb on - strand, within ABCV34_RS03445 at 757.914 kb on - strand, within ABCV34_RS03445 at 757.914 kb on - strand, within ABCV34_RS03445 at 758.015 kb on + strand, within ABCV34_RS03445 at 758.015 kb on + strand, within ABCV34_RS03445 at 758.015 kb on + strand, within ABCV34_RS03445 at 758.016 kb on - strand, within ABCV34_RS03445 at 758.065 kb on + strand, within ABCV34_RS03445 at 758.156 kb on + strand, within ABCV34_RS03445 at 758.156 kb on + strand, within ABCV34_RS03445 at 758.156 kb on + strand, within ABCV34_RS03445 at 758.157 kb on - strand, within ABCV34_RS03445 at 758.157 kb on - strand, within ABCV34_RS03445 at 758.157 kb on - strand, within ABCV34_RS03445 at 758.157 kb on - strand, within ABCV34_RS03445 at 758.264 kb on + strand, within ABCV34_RS03445 at 758.265 kb on - strand, within ABCV34_RS03445 at 758.265 kb on - strand, within ABCV34_RS03445 at 758.265 kb on - strand, within ABCV34_RS03445 at 758.265 kb on - strand, within ABCV34_RS03445 at 758.267 kb on + strand, within ABCV34_RS03445 at 758.267 kb on + strand, within ABCV34_RS03445 at 758.267 kb on + strand, within ABCV34_RS03445 at 758.267 kb on + strand, within ABCV34_RS03445 at 758.267 kb on + strand, within ABCV34_RS03445 at 758.267 kb on + strand, within ABCV34_RS03445 at 758.267 kb on + strand, within ABCV34_RS03445 at 758.267 kb on + strand, within ABCV34_RS03445 at 758.267 kb on + strand, within ABCV34_RS03445 at 758.267 kb on + strand, within ABCV34_RS03445 at 758.267 kb on + strand, within ABCV34_RS03445 at 758.268 kb on - strand, within ABCV34_RS03445 at 758.268 kb on - strand, within ABCV34_RS03445 at 758.268 kb on - strand, within ABCV34_RS03445 at 758.268 kb on - strand, within ABCV34_RS03445 at 758.268 kb on - strand, within ABCV34_RS03445 at 758.268 kb on - strand, within ABCV34_RS03445 at 758.318 kb on + strand, within ABCV34_RS03445 at 758.319 kb on - strand, within ABCV34_RS03445 at 758.543 kb on + strand at 758.543 kb on + strand at 758.563 kb on + strand, within ABCV34_RS03450 at 758.563 kb on + strand, within ABCV34_RS03450 at 758.563 kb on + strand, within ABCV34_RS03450 at 758.564 kb on - strand, within ABCV34_RS03450 at 758.584 kb on + strand, within ABCV34_RS03450 at 758.585 kb on - strand, within ABCV34_RS03450 at 758.585 kb on - strand, within ABCV34_RS03450 at 758.585 kb on - strand, within ABCV34_RS03450 at 758.585 kb on - strand, within ABCV34_RS03450 at 758.585 kb on - strand, within ABCV34_RS03450 at 758.719 kb on + strand, within ABCV34_RS03450 at 758.719 kb on + strand, within ABCV34_RS03450 at 758.720 kb on - strand, within ABCV34_RS03450 at 758.720 kb on - strand, within ABCV34_RS03450 at 758.720 kb on - strand, within ABCV34_RS03450 at 758.720 kb on - strand, within ABCV34_RS03450 at 758.845 kb on + strand, within ABCV34_RS03450 at 758.845 kb on + strand, within ABCV34_RS03450 at 758.845 kb on + strand, within ABCV34_RS03450 at 758.845 kb on + strand, within ABCV34_RS03450 at 758.845 kb on + strand, within ABCV34_RS03450 at 758.845 kb on + strand, within ABCV34_RS03450 at 758.846 kb on - strand, within ABCV34_RS03450 at 758.846 kb on - strand, within ABCV34_RS03450 at 758.846 kb on - strand, within ABCV34_RS03450 at 758.846 kb on - strand, within ABCV34_RS03450 at 758.846 kb on - strand, within ABCV34_RS03450 at 758.974 kb on + strand, within ABCV34_RS03450 at 758.974 kb on + strand, within ABCV34_RS03450 at 758.974 kb on + strand, within ABCV34_RS03450 at 758.974 kb on + strand, within ABCV34_RS03450 at 758.974 kb on + strand, within ABCV34_RS03450 at 758.974 kb on + strand, within ABCV34_RS03450 at 758.974 kb on + strand, within ABCV34_RS03450 at 758.974 kb on + strand, within ABCV34_RS03450 at 758.974 kb on + strand, within ABCV34_RS03450 at 758.974 kb on + strand, within ABCV34_RS03450 at 758.974 kb on + strand, within ABCV34_RS03450 at 758.974 kb on + strand, within ABCV34_RS03450 at 758.974 kb on + strand, within ABCV34_RS03450 at 758.974 kb on + strand, within ABCV34_RS03450 at 758.975 kb on - strand, within ABCV34_RS03450 at 758.975 kb on - strand, within ABCV34_RS03450 at 758.975 kb on - strand, within ABCV34_RS03450 at 758.975 kb on - strand, within ABCV34_RS03450 at 758.975 kb on - strand, within ABCV34_RS03450 at 758.975 kb on - strand, within ABCV34_RS03450 at 758.975 kb on - strand, within ABCV34_RS03450 at 758.975 kb on - strand, within ABCV34_RS03450 at 758.975 kb on - strand, within ABCV34_RS03450 at 758.975 kb on - strand, within ABCV34_RS03450 at 759.016 kb on + strand, within ABCV34_RS03450 at 759.016 kb on + strand, within ABCV34_RS03450 at 759.017 kb on - strand, within ABCV34_RS03450 at 759.144 kb on + strand at 759.145 kb on - strand at 759.145 kb on - strand at 759.291 kb on + strand at 759.292 kb on - strand at 759.292 kb on - strand at 759.292 kb on - strand at 759.306 kb on + strand at 759.306 kb on + strand at 759.307 kb on - strand at 759.480 kb on + strand, within ABCV34_RS03455 at 759.480 kb on + strand, within ABCV34_RS03455 at 759.480 kb on + strand, within ABCV34_RS03455 at 759.480 kb on + strand, within ABCV34_RS03455 at 759.481 kb on - strand, within ABCV34_RS03455 at 759.481 kb on - strand, within ABCV34_RS03455 at 759.481 kb on - strand, within ABCV34_RS03455 at 759.481 kb on - strand, within ABCV34_RS03455 at 759.481 kb on - strand, within ABCV34_RS03455 at 759.481 kb on - strand, within ABCV34_RS03455 at 759.481 kb on - strand, within ABCV34_RS03455 at 759.481 kb on - strand, within ABCV34_RS03455 at 759.481 kb on - strand, within ABCV34_RS03455 at 759.481 kb on - strand, within ABCV34_RS03455
Per-strain Table
Position Strand Gene LocusTag Fraction Survival; Treatment=FW300; TreatmentDuration=2hrs; Outgrowth=R2A_Kan10_Lactate remove 756,818 + -1.6 756,818 + -1.5 756,818 + -1.1 756,818 + -0.5 756,819 - -0.7 756,819 - -0.2 756,819 - +0.3 756,819 - -0.6 756,839 + -2.0 756,840 - -0.8 756,840 - +2.0 756,840 - -2.7 756,860 + -1.0 756,891 + -3.0 756,892 - +0.0 756,892 - +0.2 756,934 + -0.6 756,934 + -3.0 756,934 + -1.6 756,934 + -0.4 756,934 + -3.3 756,934 + -1.7 756,935 - -1.4 756,935 - -0.7 756,935 - -0.9 756,935 - -0.1 756,935 - -1.7 756,935 - -1.2 756,935 - +1.0 757,142 + ABCV34_RS03440 0.32 -1.4 757,142 + ABCV34_RS03440 0.32 -0.6 757,142 + ABCV34_RS03440 0.32 -0.5 757,142 + ABCV34_RS03440 0.32 -0.9 757,143 - ABCV34_RS03440 0.32 -3.2 757,143 - ABCV34_RS03440 0.32 -0.3 757,143 - ABCV34_RS03440 0.32 +0.3 757,143 - ABCV34_RS03440 0.32 -0.4 757,143 - ABCV34_RS03440 0.32 -0.7 757,143 - ABCV34_RS03440 0.32 -1.2 757,311 - ABCV34_RS03440 0.57 -1.3 757,311 - ABCV34_RS03440 0.57 +0.2 757,395 - ABCV34_RS03440 0.69 -2.2 757,406 + ABCV34_RS03440 0.71 -0.3 757,406 + ABCV34_RS03440 0.71 -1.4 757,406 + ABCV34_RS03440 0.71 +0.7 757,406 + ABCV34_RS03440 0.71 -1.7 757,407 - ABCV34_RS03440 0.71 -0.2 757,407 - ABCV34_RS03440 0.71 -0.4 757,407 - ABCV34_RS03440 0.71 -0.8 757,407 - ABCV34_RS03440 0.71 +0.0 757,433 + ABCV34_RS03440 0.75 -0.4 757,433 + ABCV34_RS03440 0.75 -1.5 757,433 + ABCV34_RS03440 0.75 -1.8 757,433 + ABCV34_RS03440 0.75 +0.3 757,433 + ABCV34_RS03440 0.75 +0.7 757,433 + ABCV34_RS03440 0.75 -1.1 757,433 + ABCV34_RS03440 0.75 -0.3 757,433 + ABCV34_RS03440 0.75 +0.6 757,434 - ABCV34_RS03440 0.75 -1.8 757,434 - ABCV34_RS03440 0.75 -1.7 757,434 - ABCV34_RS03440 0.75 +1.3 757,434 - ABCV34_RS03440 0.75 -0.7 757,434 - ABCV34_RS03440 0.75 -0.4 757,434 - ABCV34_RS03440 0.75 -2.2 757,434 - ABCV34_RS03440 0.75 -1.3 757,434 - ABCV34_RS03440 0.75 -1.3 757,434 - ABCV34_RS03440 0.75 -1.2 757,434 - ABCV34_RS03440 0.75 -1.4 757,434 - ABCV34_RS03440 0.75 +2.0 757,434 - ABCV34_RS03440 0.75 -0.6 757,434 - ABCV34_RS03440 0.75 -0.2 757,434 - ABCV34_RS03440 0.75 -1.3 757,597 + -0.5 757,597 + -1.4 757,597 + -2.3 757,597 + -0.0 757,597 + +0.6 757,597 + -3.8 757,597 + -0.2 757,598 - -1.0 757,598 - -2.4 757,598 - +1.0 757,598 - +0.1 757,598 - +0.6 757,598 - -1.0 757,598 - -0.4 757,679 - -1.0 757,874 + ABCV34_RS03445 0.11 -2.0 757,874 + ABCV34_RS03445 0.11 -0.2 757,874 + ABCV34_RS03445 0.11 -0.4 757,874 + ABCV34_RS03445 0.11 +0.0 757,874 + ABCV34_RS03445 0.11 +1.7 757,875 - ABCV34_RS03445 0.11 -1.3 757,875 - ABCV34_RS03445 0.11 -1.5 757,913 + ABCV34_RS03445 0.17 -0.8 757,913 + ABCV34_RS03445 0.17 -0.4 757,913 + ABCV34_RS03445 0.17 -1.2 757,914 - ABCV34_RS03445 0.17 +0.1 757,914 - ABCV34_RS03445 0.17 -1.2 757,914 - ABCV34_RS03445 0.17 -2.5 757,914 - ABCV34_RS03445 0.17 -1.3 757,914 - ABCV34_RS03445 0.17 -0.6 757,914 - ABCV34_RS03445 0.17 +0.1 758,015 + ABCV34_RS03445 0.32 +0.0 758,015 + ABCV34_RS03445 0.32 -2.4 758,015 + ABCV34_RS03445 0.32 -1.4 758,016 - ABCV34_RS03445 0.32 -0.7 758,065 + ABCV34_RS03445 0.39 -1.1 758,156 + ABCV34_RS03445 0.52 -2.5 758,156 + ABCV34_RS03445 0.52 -1.6 758,156 + ABCV34_RS03445 0.52 -1.7 758,157 - ABCV34_RS03445 0.52 -0.6 758,157 - ABCV34_RS03445 0.52 -1.3 758,157 - ABCV34_RS03445 0.52 -2.0 758,157 - ABCV34_RS03445 0.52 -1.8 758,264 + ABCV34_RS03445 0.68 -0.8 758,265 - ABCV34_RS03445 0.68 -1.0 758,265 - ABCV34_RS03445 0.68 +0.3 758,265 - ABCV34_RS03445 0.68 -1.0 758,265 - ABCV34_RS03445 0.68 -2.3 758,267 + ABCV34_RS03445 0.69 +1.3 758,267 + ABCV34_RS03445 0.69 -1.6 758,267 + ABCV34_RS03445 0.69 -0.6 758,267 + ABCV34_RS03445 0.69 -1.7 758,267 + ABCV34_RS03445 0.69 -1.8 758,267 + ABCV34_RS03445 0.69 -1.9 758,267 + ABCV34_RS03445 0.69 -1.9 758,267 + ABCV34_RS03445 0.69 -2.4 758,267 + ABCV34_RS03445 0.69 -1.8 758,267 + ABCV34_RS03445 0.69 -1.4 758,267 + ABCV34_RS03445 0.69 -1.0 758,268 - ABCV34_RS03445 0.69 -0.9 758,268 - ABCV34_RS03445 0.69 -1.0 758,268 - ABCV34_RS03445 0.69 -0.2 758,268 - ABCV34_RS03445 0.69 +1.0 758,268 - ABCV34_RS03445 0.69 +0.3 758,268 - ABCV34_RS03445 0.69 -1.9 758,318 + ABCV34_RS03445 0.76 -1.4 758,319 - ABCV34_RS03445 0.76 -1.6 758,543 + +0.1 758,543 + -1.2 758,563 + ABCV34_RS03450 0.12 -2.2 758,563 + ABCV34_RS03450 0.12 -0.7 758,563 + ABCV34_RS03450 0.12 +0.4 758,564 - ABCV34_RS03450 0.12 -2.7 758,584 + ABCV34_RS03450 0.15 +0.1 758,585 - ABCV34_RS03450 0.15 -0.7 758,585 - ABCV34_RS03450 0.15 +0.2 758,585 - ABCV34_RS03450 0.15 -1.1 758,585 - ABCV34_RS03450 0.15 +1.7 758,585 - ABCV34_RS03450 0.15 -2.6 758,719 + ABCV34_RS03450 0.34 -1.2 758,719 + ABCV34_RS03450 0.34 -0.4 758,720 - ABCV34_RS03450 0.34 -0.6 758,720 - ABCV34_RS03450 0.34 +0.1 758,720 - ABCV34_RS03450 0.34 +1.1 758,720 - ABCV34_RS03450 0.34 -1.4 758,845 + ABCV34_RS03450 0.51 -3.3 758,845 + ABCV34_RS03450 0.51 +2.0 758,845 + ABCV34_RS03450 0.51 -2.1 758,845 + ABCV34_RS03450 0.51 -0.6 758,845 + ABCV34_RS03450 0.51 -0.9 758,845 + ABCV34_RS03450 0.51 -1.3 758,846 - ABCV34_RS03450 0.51 -1.4 758,846 - ABCV34_RS03450 0.51 -2.2 758,846 - ABCV34_RS03450 0.51 -3.4 758,846 - ABCV34_RS03450 0.51 +3.3 758,846 - ABCV34_RS03450 0.51 -0.1 758,974 + ABCV34_RS03450 0.69 -1.3 758,974 + ABCV34_RS03450 0.69 -0.3 758,974 + ABCV34_RS03450 0.69 -0.2 758,974 + ABCV34_RS03450 0.69 -1.1 758,974 + ABCV34_RS03450 0.69 -1.6 758,974 + ABCV34_RS03450 0.69 +0.4 758,974 + ABCV34_RS03450 0.69 +0.9 758,974 + ABCV34_RS03450 0.69 -0.0 758,974 + ABCV34_RS03450 0.69 -0.1 758,974 + ABCV34_RS03450 0.69 +1.0 758,974 + ABCV34_RS03450 0.69 -0.4 758,974 + ABCV34_RS03450 0.69 -1.3 758,974 + ABCV34_RS03450 0.69 -2.9 758,974 + ABCV34_RS03450 0.69 -2.7 758,975 - ABCV34_RS03450 0.69 -0.2 758,975 - ABCV34_RS03450 0.69 -2.0 758,975 - ABCV34_RS03450 0.69 -1.4 758,975 - ABCV34_RS03450 0.69 -1.8 758,975 - ABCV34_RS03450 0.69 +1.0 758,975 - ABCV34_RS03450 0.69 -2.0 758,975 - ABCV34_RS03450 0.69 -0.4 758,975 - ABCV34_RS03450 0.69 -1.4 758,975 - ABCV34_RS03450 0.69 -1.6 758,975 - ABCV34_RS03450 0.69 +1.7 759,016 + ABCV34_RS03450 0.75 -1.2 759,016 + ABCV34_RS03450 0.75 -0.9 759,017 - ABCV34_RS03450 0.75 -0.9 759,144 + -1.3 759,145 - -0.7 759,145 - +1.0 759,291 + -1.4 759,292 - -0.7 759,292 - -0.4 759,292 - -1.0 759,306 + +1.5 759,306 + -0.8 759,307 - -1.7 759,480 + ABCV34_RS03455 0.23 -1.0 759,480 + ABCV34_RS03455 0.23 -1.8 759,480 + ABCV34_RS03455 0.23 -1.6 759,480 + ABCV34_RS03455 0.23 +0.1 759,481 - ABCV34_RS03455 0.23 -2.4 759,481 - ABCV34_RS03455 0.23 +0.3 759,481 - ABCV34_RS03455 0.23 -0.8 759,481 - ABCV34_RS03455 0.23 -0.8 759,481 - ABCV34_RS03455 0.23 -1.7 759,481 - ABCV34_RS03455 0.23 -0.6 759,481 - ABCV34_RS03455 0.23 -1.8 759,481 - ABCV34_RS03455 0.23 -2.1 759,481 - ABCV34_RS03455 0.23 -0.3 759,481 - ABCV34_RS03455 0.23 -0.3
Or see this region's nucleotide sequence