Experiment: Survival; Treatment=FW300; TreatmentDuration=2hrs; Outgrowth=R2A_Kan10_Lactate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABCV34_RS03290 and ABCV34_RS03295 are separated by 16 nucleotides ABCV34_RS03295 and ABCV34_RS03300 are separated by 7 nucleotides ABCV34_RS03300 and ABCV34_RS03305 are separated by 4 nucleotides ABCV34_RS03305 and ABCV34_RS03310 are separated by 19 nucleotides
ABCV34_RS03290: ABCV34_RS03290 - type IV secretion system DNA-binding domain-containing protein, at 730,747 to 732,345
_RS03290
ABCV34_RS03295: ABCV34_RS03295 - hypothetical protein, at 732,362 to 732,808
_RS03295
ABCV34_RS03300: ABCV34_RS03300 - StbB family protein, at 732,816 to 733,523
_RS03300
ABCV34_RS03305: ABCV34_RS03305 - hypothetical protein, at 733,528 to 734,010
_RS03305
ABCV34_RS03310: ABCV34_RS03310 - hypothetical protein, at 734,030 to 734,500
_RS03310
Position (kb) 732
733
734 Strain fitness (log2 ratio) -2
-1
0
1
2 at 731.895 kb on + strand, within ABCV34_RS03290 at 731.895 kb on + strand, within ABCV34_RS03290 at 731.896 kb on - strand, within ABCV34_RS03290 at 731.967 kb on + strand, within ABCV34_RS03290 at 731.967 kb on + strand, within ABCV34_RS03290 at 731.967 kb on + strand, within ABCV34_RS03290 at 731.968 kb on - strand, within ABCV34_RS03290 at 731.986 kb on + strand, within ABCV34_RS03290 at 731.986 kb on + strand, within ABCV34_RS03290 at 731.986 kb on + strand, within ABCV34_RS03290 at 731.987 kb on - strand, within ABCV34_RS03290 at 732.025 kb on + strand, within ABCV34_RS03290 at 732.025 kb on + strand, within ABCV34_RS03290 at 732.026 kb on - strand, within ABCV34_RS03290 at 732.026 kb on - strand, within ABCV34_RS03290 at 732.074 kb on + strand, within ABCV34_RS03290 at 732.075 kb on - strand, within ABCV34_RS03290 at 732.144 kb on + strand, within ABCV34_RS03290 at 732.145 kb on - strand, within ABCV34_RS03290 at 732.167 kb on + strand, within ABCV34_RS03290 at 732.168 kb on - strand, within ABCV34_RS03290 at 732.190 kb on - strand at 732.190 kb on - strand at 732.190 kb on - strand at 732.190 kb on - strand at 732.251 kb on + strand at 732.252 kb on - strand at 732.252 kb on - strand at 732.252 kb on - strand at 732.339 kb on + strand at 732.339 kb on + strand at 732.339 kb on + strand at 732.339 kb on + strand at 732.339 kb on + strand at 732.339 kb on + strand at 732.339 kb on + strand at 732.339 kb on + strand at 732.340 kb on - strand at 732.340 kb on - strand at 732.402 kb on - strand at 732.602 kb on + strand, within ABCV34_RS03295 at 732.744 kb on + strand, within ABCV34_RS03295 at 732.744 kb on + strand, within ABCV34_RS03295 at 732.744 kb on + strand, within ABCV34_RS03295 at 732.745 kb on - strand, within ABCV34_RS03295 at 732.745 kb on - strand, within ABCV34_RS03295 at 732.745 kb on - strand, within ABCV34_RS03295 at 733.104 kb on + strand, within ABCV34_RS03300 at 733.104 kb on + strand, within ABCV34_RS03300 at 733.105 kb on - strand, within ABCV34_RS03300 at 733.105 kb on - strand, within ABCV34_RS03300 at 733.105 kb on - strand, within ABCV34_RS03300 at 733.105 kb on - strand, within ABCV34_RS03300 at 733.372 kb on - strand, within ABCV34_RS03300 at 733.372 kb on - strand, within ABCV34_RS03300 at 733.501 kb on + strand at 733.501 kb on + strand at 733.502 kb on - strand at 733.636 kb on + strand, within ABCV34_RS03305 at 733.636 kb on + strand, within ABCV34_RS03305 at 733.636 kb on + strand, within ABCV34_RS03305 at 733.636 kb on + strand, within ABCV34_RS03305 at 733.636 kb on + strand, within ABCV34_RS03305 at 733.636 kb on + strand, within ABCV34_RS03305 at 733.636 kb on + strand, within ABCV34_RS03305 at 733.636 kb on + strand, within ABCV34_RS03305 at 733.636 kb on + strand, within ABCV34_RS03305 at 733.636 kb on + strand, within ABCV34_RS03305 at 733.637 kb on - strand, within ABCV34_RS03305 at 733.637 kb on - strand, within ABCV34_RS03305 at 733.637 kb on - strand, within ABCV34_RS03305 at 733.637 kb on - strand, within ABCV34_RS03305 at 733.637 kb on - strand, within ABCV34_RS03305 at 733.637 kb on - strand, within ABCV34_RS03305 at 733.811 kb on + strand, within ABCV34_RS03305 at 733.811 kb on + strand, within ABCV34_RS03305 at 733.811 kb on + strand, within ABCV34_RS03305 at 733.811 kb on + strand, within ABCV34_RS03305 at 733.811 kb on + strand, within ABCV34_RS03305 at 733.811 kb on + strand, within ABCV34_RS03305 at 733.811 kb on + strand, within ABCV34_RS03305 at 733.811 kb on + strand, within ABCV34_RS03305 at 733.811 kb on + strand, within ABCV34_RS03305 at 733.811 kb on + strand, within ABCV34_RS03305 at 733.811 kb on + strand, within ABCV34_RS03305 at 733.811 kb on + strand, within ABCV34_RS03305 at 733.811 kb on + strand, within ABCV34_RS03305 at 733.811 kb on + strand, within ABCV34_RS03305 at 733.811 kb on + strand, within ABCV34_RS03305 at 733.812 kb on - strand, within ABCV34_RS03305 at 733.812 kb on - strand, within ABCV34_RS03305 at 733.812 kb on - strand, within ABCV34_RS03305 at 733.812 kb on - strand, within ABCV34_RS03305 at 733.812 kb on - strand, within ABCV34_RS03305 at 733.812 kb on - strand, within ABCV34_RS03305 at 733.812 kb on - strand, within ABCV34_RS03305 at 733.812 kb on - strand, within ABCV34_RS03305 at 733.812 kb on - strand, within ABCV34_RS03305 at 733.812 kb on - strand, within ABCV34_RS03305 at 733.812 kb on - strand, within ABCV34_RS03305 at 733.812 kb on - strand, within ABCV34_RS03305 at 734.039 kb on + strand at 734.039 kb on + strand at 734.039 kb on + strand at 734.039 kb on + strand at 734.039 kb on + strand at 734.039 kb on + strand at 734.040 kb on - strand at 734.040 kb on - strand at 734.040 kb on - strand at 734.040 kb on - strand at 734.107 kb on - strand, within ABCV34_RS03310 at 734.202 kb on + strand, within ABCV34_RS03310 at 734.202 kb on + strand, within ABCV34_RS03310 at 734.344 kb on + strand, within ABCV34_RS03310 at 734.349 kb on + strand, within ABCV34_RS03310 at 734.349 kb on + strand, within ABCV34_RS03310 at 734.349 kb on + strand, within ABCV34_RS03310 at 734.350 kb on - strand, within ABCV34_RS03310 at 734.350 kb on - strand, within ABCV34_RS03310 at 734.350 kb on - strand, within ABCV34_RS03310
Per-strain Table
Position Strand Gene LocusTag Fraction Survival; Treatment=FW300; TreatmentDuration=2hrs; Outgrowth=R2A_Kan10_Lactate remove 731,895 + ABCV34_RS03290 0.72 -0.3 731,895 + ABCV34_RS03290 0.72 -1.3 731,896 - ABCV34_RS03290 0.72 -1.5 731,967 + ABCV34_RS03290 0.76 -0.4 731,967 + ABCV34_RS03290 0.76 +1.5 731,967 + ABCV34_RS03290 0.76 -0.9 731,968 - ABCV34_RS03290 0.76 -0.6 731,986 + ABCV34_RS03290 0.77 -1.2 731,986 + ABCV34_RS03290 0.77 -0.7 731,986 + ABCV34_RS03290 0.77 -1.3 731,987 - ABCV34_RS03290 0.78 +0.9 732,025 + ABCV34_RS03290 0.80 -0.6 732,025 + ABCV34_RS03290 0.80 -0.5 732,026 - ABCV34_RS03290 0.80 -1.0 732,026 - ABCV34_RS03290 0.80 +0.1 732,074 + ABCV34_RS03290 0.83 -0.2 732,075 - ABCV34_RS03290 0.83 -0.9 732,144 + ABCV34_RS03290 0.87 +0.8 732,145 - ABCV34_RS03290 0.87 -0.2 732,167 + ABCV34_RS03290 0.89 -2.3 732,168 - ABCV34_RS03290 0.89 -1.1 732,190 - -0.4 732,190 - -0.6 732,190 - +0.1 732,190 - -1.3 732,251 + -0.7 732,252 - -0.8 732,252 - -1.4 732,252 - -0.9 732,339 + -0.1 732,339 + -1.3 732,339 + -2.1 732,339 + -1.1 732,339 + -0.3 732,339 + +0.4 732,339 + -0.9 732,339 + +1.3 732,340 - +0.1 732,340 - +1.1 732,402 - +0.8 732,602 + ABCV34_RS03295 0.54 -1.3 732,744 + ABCV34_RS03295 0.85 -1.4 732,744 + ABCV34_RS03295 0.85 -1.0 732,744 + ABCV34_RS03295 0.85 +0.0 732,745 - ABCV34_RS03295 0.86 +1.2 732,745 - ABCV34_RS03295 0.86 -0.9 732,745 - ABCV34_RS03295 0.86 -0.6 733,104 + ABCV34_RS03300 0.41 -1.0 733,104 + ABCV34_RS03300 0.41 -1.3 733,105 - ABCV34_RS03300 0.41 -1.8 733,105 - ABCV34_RS03300 0.41 -1.7 733,105 - ABCV34_RS03300 0.41 -1.5 733,105 - ABCV34_RS03300 0.41 -0.2 733,372 - ABCV34_RS03300 0.79 -0.8 733,372 - ABCV34_RS03300 0.79 -1.4 733,501 + -1.4 733,501 + -0.8 733,502 - -2.5 733,636 + ABCV34_RS03305 0.22 -2.3 733,636 + ABCV34_RS03305 0.22 -1.0 733,636 + ABCV34_RS03305 0.22 -1.4 733,636 + ABCV34_RS03305 0.22 +0.7 733,636 + ABCV34_RS03305 0.22 -1.9 733,636 + ABCV34_RS03305 0.22 -0.9 733,636 + ABCV34_RS03305 0.22 -2.1 733,636 + ABCV34_RS03305 0.22 -1.2 733,636 + ABCV34_RS03305 0.22 -1.4 733,636 + ABCV34_RS03305 0.22 -1.7 733,637 - ABCV34_RS03305 0.23 -0.1 733,637 - ABCV34_RS03305 0.23 -0.1 733,637 - ABCV34_RS03305 0.23 +0.4 733,637 - ABCV34_RS03305 0.23 -1.7 733,637 - ABCV34_RS03305 0.23 -1.5 733,637 - ABCV34_RS03305 0.23 +0.4 733,811 + ABCV34_RS03305 0.59 -0.5 733,811 + ABCV34_RS03305 0.59 -2.4 733,811 + ABCV34_RS03305 0.59 -1.7 733,811 + ABCV34_RS03305 0.59 -0.5 733,811 + ABCV34_RS03305 0.59 +0.5 733,811 + ABCV34_RS03305 0.59 -1.7 733,811 + ABCV34_RS03305 0.59 -0.9 733,811 + ABCV34_RS03305 0.59 -1.0 733,811 + ABCV34_RS03305 0.59 -2.3 733,811 + ABCV34_RS03305 0.59 +2.2 733,811 + ABCV34_RS03305 0.59 -1.2 733,811 + ABCV34_RS03305 0.59 -1.0 733,811 + ABCV34_RS03305 0.59 -0.4 733,811 + ABCV34_RS03305 0.59 -0.5 733,811 + ABCV34_RS03305 0.59 -0.2 733,812 - ABCV34_RS03305 0.59 +1.9 733,812 - ABCV34_RS03305 0.59 -1.0 733,812 - ABCV34_RS03305 0.59 -1.1 733,812 - ABCV34_RS03305 0.59 -0.5 733,812 - ABCV34_RS03305 0.59 -0.4 733,812 - ABCV34_RS03305 0.59 -1.4 733,812 - ABCV34_RS03305 0.59 -2.5 733,812 - ABCV34_RS03305 0.59 +1.6 733,812 - ABCV34_RS03305 0.59 +0.3 733,812 - ABCV34_RS03305 0.59 -1.2 733,812 - ABCV34_RS03305 0.59 -1.1 733,812 - ABCV34_RS03305 0.59 -1.3 734,039 + -2.4 734,039 + -0.9 734,039 + -0.9 734,039 + +0.0 734,039 + -0.4 734,039 + +1.8 734,040 - -1.8 734,040 - -0.8 734,040 - +1.0 734,040 - -1.1 734,107 - ABCV34_RS03310 0.16 +0.3 734,202 + ABCV34_RS03310 0.37 -1.3 734,202 + ABCV34_RS03310 0.37 -1.2 734,344 + ABCV34_RS03310 0.67 +0.1 734,349 + ABCV34_RS03310 0.68 +1.4 734,349 + ABCV34_RS03310 0.68 -0.8 734,349 + ABCV34_RS03310 0.68 +2.0 734,350 - ABCV34_RS03310 0.68 -1.0 734,350 - ABCV34_RS03310 0.68 -0.3 734,350 - ABCV34_RS03310 0.68 -2.1
Or see this region's nucleotide sequence