Strain Fitness in Castellaniella sp019104865 MT123 around ABCV34_RS02615

Experiment: Survival; Treatment=FW300; TreatmentDuration=2hrs; Outgrowth=R2A_Kan10_Lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABCV34_RS02610 and ABCV34_RS02615 overlap by 4 nucleotidesABCV34_RS02615 and ABCV34_RS02620 overlap by 4 nucleotides ABCV34_RS02610: ABCV34_RS02610 - 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN, at 581,714 to 582,877 _RS02610 ABCV34_RS02615: ABCV34_RS02615 - helix-turn-helix domain-containing protein, at 582,874 to 583,377 _RS02615 ABCV34_RS02620: ABCV34_RS02620 - flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase, at 583,374 to 584,684 _RS02620 Position (kb) 582 583 584Strain fitness (log2 ratio) -1 0 1at 582.155 kb on + strand, within ABCV34_RS02610at 582.551 kb on + strand, within ABCV34_RS02610at 582.551 kb on + strand, within ABCV34_RS02610at 582.551 kb on + strand, within ABCV34_RS02610at 582.551 kb on + strand, within ABCV34_RS02610at 582.855 kb on + strandat 583.012 kb on + strand, within ABCV34_RS02615at 583.099 kb on + strand, within ABCV34_RS02615at 583.099 kb on + strand, within ABCV34_RS02615at 583.306 kb on + strand, within ABCV34_RS02615at 583.306 kb on + strand, within ABCV34_RS02615

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Per-strain Table

Position Strand Gene LocusTag Fraction Survival; Treatment=FW300; TreatmentDuration=2hrs; Outgrowth=R2A_Kan10_Lactate
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582,155 + ABCV34_RS02610 0.38 -0.2
582,551 + ABCV34_RS02610 0.72 -1.0
582,551 + ABCV34_RS02610 0.72 -0.4
582,551 + ABCV34_RS02610 0.72 -1.2
582,551 + ABCV34_RS02610 0.72 -1.0
582,855 + -0.3
583,012 + ABCV34_RS02615 0.27 -0.9
583,099 + ABCV34_RS02615 0.45 +0.4
583,099 + ABCV34_RS02615 0.45 -1.3
583,306 + ABCV34_RS02615 0.86 -1.1
583,306 + ABCV34_RS02615 0.86 -0.6

Or see this region's nucleotide sequence