Strain Fitness in Castellaniella sp019104865 MT123 around ABCV34_RS02450

Experiment: Survival; Treatment=FW300; TreatmentDuration=2hrs; Outgrowth=R2A_Kan10_Lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABCV34_RS02440 and ABCV34_RS02445 are separated by 72 nucleotidesABCV34_RS02445 and ABCV34_RS02450 are separated by 88 nucleotidesABCV34_RS02450 and ABCV34_RS02455 are separated by 71 nucleotides ABCV34_RS02440: ABCV34_RS02440 - polysaccharide deacetylase family protein, at 544,411 to 545,247 _RS02440 ABCV34_RS02445: ABCV34_RS02445 - glycosyltransferase family 2 protein, at 545,320 to 546,066 _RS02445 ABCV34_RS02450: ABCV34_RS02450 - polysaccharide deacetylase family protein, at 546,155 to 546,943 _RS02450 ABCV34_RS02455: ABCV34_RS02455 - glycosyltransferase family 4 protein, at 547,015 to 548,160 _RS02455 Position (kb) 546 547Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 545.236 kb on + strandat 545.236 kb on + strandat 545.236 kb on + strandat 545.236 kb on + strandat 545.236 kb on + strandat 545.236 kb on + strandat 545.236 kb on + strandat 545.236 kb on + strandat 545.236 kb on + strandat 545.236 kb on + strandat 545.236 kb on + strandat 545.236 kb on + strandat 545.236 kb on + strandat 545.236 kb on + strandat 545.236 kb on + strandat 545.236 kb on + strandat 545.236 kb on + strandat 545.236 kb on + strandat 545.236 kb on + strandat 545.236 kb on + strandat 545.236 kb on + strandat 545.237 kb on - strandat 545.237 kb on - strandat 545.237 kb on - strandat 545.237 kb on - strandat 545.237 kb on - strandat 545.237 kb on - strandat 545.237 kb on - strandat 545.237 kb on - strandat 545.237 kb on - strandat 545.237 kb on - strandat 545.237 kb on - strandat 545.237 kb on - strandat 545.698 kb on + strand, within ABCV34_RS02445at 545.768 kb on + strand, within ABCV34_RS02445at 545.769 kb on - strand, within ABCV34_RS02445at 545.769 kb on - strand, within ABCV34_RS02445at 545.769 kb on - strand, within ABCV34_RS02445at 545.769 kb on - strand, within ABCV34_RS02445at 545.950 kb on + strand, within ABCV34_RS02445at 546.025 kb on + strandat 546.035 kb on + strandat 546.036 kb on - strandat 546.036 kb on - strandat 546.036 kb on - strandat 546.036 kb on - strandat 546.143 kb on + strandat 546.143 kb on + strandat 546.143 kb on + strandat 546.144 kb on - strandat 546.145 kb on + strandat 546.145 kb on + strandat 546.145 kb on + strandat 546.145 kb on + strandat 546.145 kb on + strandat 546.145 kb on + strandat 546.146 kb on - strandat 546.146 kb on - strandat 546.146 kb on - strandat 546.146 kb on - strandat 546.146 kb on - strandat 546.146 kb on - strandat 546.173 kb on + strandat 546.173 kb on + strandat 546.173 kb on + strandat 546.173 kb on + strandat 546.173 kb on + strandat 546.173 kb on + strandat 546.173 kb on + strandat 546.174 kb on - strandat 546.223 kb on + strandat 546.312 kb on - strand, within ABCV34_RS02450at 546.312 kb on - strand, within ABCV34_RS02450at 546.312 kb on - strand, within ABCV34_RS02450at 546.366 kb on - strand, within ABCV34_RS02450at 546.428 kb on + strand, within ABCV34_RS02450at 546.428 kb on + strand, within ABCV34_RS02450at 546.428 kb on + strand, within ABCV34_RS02450at 546.429 kb on - strand, within ABCV34_RS02450at 546.429 kb on - strand, within ABCV34_RS02450at 546.672 kb on - strand, within ABCV34_RS02450at 546.677 kb on + strand, within ABCV34_RS02450at 546.678 kb on - strand, within ABCV34_RS02450at 547.072 kb on + strandat 547.073 kb on - strandat 547.073 kb on - strandat 547.073 kb on - strandat 547.073 kb on - strandat 547.138 kb on + strand, within ABCV34_RS02455at 547.138 kb on + strand, within ABCV34_RS02455at 547.138 kb on + strand, within ABCV34_RS02455at 547.138 kb on + strand, within ABCV34_RS02455at 547.138 kb on + strand, within ABCV34_RS02455at 547.139 kb on - strand, within ABCV34_RS02455at 547.139 kb on - strand, within ABCV34_RS02455at 547.139 kb on - strand, within ABCV34_RS02455at 547.139 kb on - strand, within ABCV34_RS02455at 547.402 kb on + strand, within ABCV34_RS02455at 547.402 kb on + strand, within ABCV34_RS02455at 547.402 kb on + strand, within ABCV34_RS02455at 547.402 kb on + strand, within ABCV34_RS02455at 547.402 kb on + strand, within ABCV34_RS02455at 547.402 kb on + strand, within ABCV34_RS02455at 547.402 kb on + strand, within ABCV34_RS02455at 547.402 kb on + strand, within ABCV34_RS02455at 547.403 kb on - strand, within ABCV34_RS02455at 547.403 kb on - strand, within ABCV34_RS02455at 547.403 kb on - strand, within ABCV34_RS02455at 547.403 kb on - strand, within ABCV34_RS02455at 547.403 kb on - strand, within ABCV34_RS02455at 547.403 kb on - strand, within ABCV34_RS02455at 547.460 kb on + strand, within ABCV34_RS02455at 547.461 kb on - strand, within ABCV34_RS02455at 547.495 kb on + strand, within ABCV34_RS02455at 547.495 kb on + strand, within ABCV34_RS02455at 547.496 kb on - strand, within ABCV34_RS02455at 547.496 kb on - strand, within ABCV34_RS02455at 547.496 kb on - strand, within ABCV34_RS02455at 547.611 kb on + strand, within ABCV34_RS02455at 547.612 kb on - strand, within ABCV34_RS02455at 547.810 kb on + strand, within ABCV34_RS02455at 547.811 kb on - strand, within ABCV34_RS02455at 547.811 kb on - strand, within ABCV34_RS02455at 547.811 kb on - strand, within ABCV34_RS02455at 547.811 kb on - strand, within ABCV34_RS02455at 547.814 kb on - strand, within ABCV34_RS02455at 547.831 kb on + strand, within ABCV34_RS02455at 547.831 kb on + strand, within ABCV34_RS02455at 547.831 kb on + strand, within ABCV34_RS02455at 547.831 kb on + strand, within ABCV34_RS02455at 547.831 kb on + strand, within ABCV34_RS02455at 547.831 kb on + strand, within ABCV34_RS02455at 547.832 kb on - strand, within ABCV34_RS02455at 547.832 kb on - strand, within ABCV34_RS02455at 547.832 kb on - strand, within ABCV34_RS02455at 547.832 kb on - strand, within ABCV34_RS02455at 547.832 kb on - strand, within ABCV34_RS02455at 547.832 kb on - strand, within ABCV34_RS02455at 547.832 kb on - strand, within ABCV34_RS02455at 547.832 kb on - strand, within ABCV34_RS02455at 547.832 kb on - strand, within ABCV34_RS02455at 547.939 kb on + strand, within ABCV34_RS02455at 547.939 kb on + strand, within ABCV34_RS02455at 547.939 kb on + strand, within ABCV34_RS02455at 547.939 kb on + strand, within ABCV34_RS02455at 547.939 kb on + strand, within ABCV34_RS02455at 547.939 kb on + strand, within ABCV34_RS02455at 547.940 kb on - strand, within ABCV34_RS02455at 547.940 kb on - strand, within ABCV34_RS02455at 547.940 kb on - strand, within ABCV34_RS02455at 547.940 kb on - strand, within ABCV34_RS02455at 547.940 kb on - strand, within ABCV34_RS02455at 547.940 kb on - strand, within ABCV34_RS02455

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Per-strain Table

Position Strand Gene LocusTag Fraction Survival; Treatment=FW300; TreatmentDuration=2hrs; Outgrowth=R2A_Kan10_Lactate
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545,236 + +2.6
545,236 + +0.0
545,236 + -1.7
545,236 + +0.5
545,236 + -0.5
545,236 + -1.1
545,236 + -0.6
545,236 + -0.3
545,236 + -0.8
545,236 + -1.2
545,236 + -0.6
545,236 + -1.2
545,236 + -1.0
545,236 + -2.3
545,236 + -0.1
545,236 + -0.1
545,236 + -0.6
545,236 + +0.4
545,236 + +0.1
545,236 + +0.7
545,236 + +0.6
545,237 - +0.0
545,237 - -0.7
545,237 - -0.3
545,237 - -0.6
545,237 - +0.4
545,237 - +2.0
545,237 - -1.3
545,237 - +0.6
545,237 - -1.6
545,237 - -0.8
545,237 - +2.0
545,237 - +0.8
545,698 + ABCV34_RS02445 0.51 -2.0
545,768 + ABCV34_RS02445 0.60 +0.0
545,769 - ABCV34_RS02445 0.60 -1.8
545,769 - ABCV34_RS02445 0.60 -2.5
545,769 - ABCV34_RS02445 0.60 -1.4
545,769 - ABCV34_RS02445 0.60 -1.4
545,950 + ABCV34_RS02445 0.84 -0.4
546,025 + -1.7
546,035 + -3.0
546,036 - -1.3
546,036 - -2.2
546,036 - -1.4
546,036 - -1.4
546,143 + +0.7
546,143 + +1.0
546,143 + -2.1
546,144 - -2.1
546,145 + -0.6
546,145 + +0.3
546,145 + -2.1
546,145 + -1.0
546,145 + -1.2
546,145 + -0.3
546,146 - -1.1
546,146 - +1.0
546,146 - +1.0
546,146 - -1.7
546,146 - -0.2
546,146 - -1.0
546,173 + -0.9
546,173 + -2.5
546,173 + +0.0
546,173 + -1.0
546,173 + -1.7
546,173 + -1.8
546,173 + -0.7
546,174 - -2.9
546,223 + -1.6
546,312 - ABCV34_RS02450 0.20 -1.2
546,312 - ABCV34_RS02450 0.20 -1.4
546,312 - ABCV34_RS02450 0.20 -2.5
546,366 - ABCV34_RS02450 0.27 -2.5
546,428 + ABCV34_RS02450 0.35 -2.1
546,428 + ABCV34_RS02450 0.35 +0.0
546,428 + ABCV34_RS02450 0.35 -0.5
546,429 - ABCV34_RS02450 0.35 +0.4
546,429 - ABCV34_RS02450 0.35 -0.5
546,672 - ABCV34_RS02450 0.66 -1.5
546,677 + ABCV34_RS02450 0.66 -1.4
546,678 - ABCV34_RS02450 0.66 -0.9
547,072 + -1.5
547,073 - -2.7
547,073 - -2.3
547,073 - -3.0
547,073 - +0.4
547,138 + ABCV34_RS02455 0.11 -1.9
547,138 + ABCV34_RS02455 0.11 +1.0
547,138 + ABCV34_RS02455 0.11 -1.4
547,138 + ABCV34_RS02455 0.11 -1.3
547,138 + ABCV34_RS02455 0.11 -2.8
547,139 - ABCV34_RS02455 0.11 +0.2
547,139 - ABCV34_RS02455 0.11 -0.7
547,139 - ABCV34_RS02455 0.11 -0.4
547,139 - ABCV34_RS02455 0.11 -0.3
547,402 + ABCV34_RS02455 0.34 +0.4
547,402 + ABCV34_RS02455 0.34 -3.0
547,402 + ABCV34_RS02455 0.34 -1.8
547,402 + ABCV34_RS02455 0.34 -3.6
547,402 + ABCV34_RS02455 0.34 -1.9
547,402 + ABCV34_RS02455 0.34 -1.1
547,402 + ABCV34_RS02455 0.34 -1.1
547,402 + ABCV34_RS02455 0.34 -2.6
547,403 - ABCV34_RS02455 0.34 -0.9
547,403 - ABCV34_RS02455 0.34 -1.8
547,403 - ABCV34_RS02455 0.34 -2.4
547,403 - ABCV34_RS02455 0.34 -2.9
547,403 - ABCV34_RS02455 0.34 -1.4
547,403 - ABCV34_RS02455 0.34 -3.6
547,460 + ABCV34_RS02455 0.39 +1.0
547,461 - ABCV34_RS02455 0.39 -3.0
547,495 + ABCV34_RS02455 0.42 -0.9
547,495 + ABCV34_RS02455 0.42 -1.1
547,496 - ABCV34_RS02455 0.42 -1.9
547,496 - ABCV34_RS02455 0.42 -0.8
547,496 - ABCV34_RS02455 0.42 +0.4
547,611 + ABCV34_RS02455 0.52 -3.5
547,612 - ABCV34_RS02455 0.52 -0.1
547,810 + ABCV34_RS02455 0.69 -2.6
547,811 - ABCV34_RS02455 0.69 -2.1
547,811 - ABCV34_RS02455 0.69 -1.6
547,811 - ABCV34_RS02455 0.69 -1.7
547,811 - ABCV34_RS02455 0.69 -1.4
547,814 - ABCV34_RS02455 0.70 -1.2
547,831 + ABCV34_RS02455 0.71 -1.2
547,831 + ABCV34_RS02455 0.71 +0.7
547,831 + ABCV34_RS02455 0.71 -1.7
547,831 + ABCV34_RS02455 0.71 -0.3
547,831 + ABCV34_RS02455 0.71 -1.7
547,831 + ABCV34_RS02455 0.71 -2.5
547,832 - ABCV34_RS02455 0.71 -2.5
547,832 - ABCV34_RS02455 0.71 -2.0
547,832 - ABCV34_RS02455 0.71 -3.2
547,832 - ABCV34_RS02455 0.71 -0.6
547,832 - ABCV34_RS02455 0.71 -0.8
547,832 - ABCV34_RS02455 0.71 -1.0
547,832 - ABCV34_RS02455 0.71 -3.4
547,832 - ABCV34_RS02455 0.71 -0.8
547,832 - ABCV34_RS02455 0.71 -2.4
547,939 + ABCV34_RS02455 0.81 -0.5
547,939 + ABCV34_RS02455 0.81 +1.4
547,939 + ABCV34_RS02455 0.81 -2.3
547,939 + ABCV34_RS02455 0.81 +1.0
547,939 + ABCV34_RS02455 0.81 -1.6
547,939 + ABCV34_RS02455 0.81 -1.3
547,940 - ABCV34_RS02455 0.81 -1.1
547,940 - ABCV34_RS02455 0.81 -1.3
547,940 - ABCV34_RS02455 0.81 -0.6
547,940 - ABCV34_RS02455 0.81 -1.9
547,940 - ABCV34_RS02455 0.81 +0.3
547,940 - ABCV34_RS02455 0.81 -2.1

Or see this region's nucleotide sequence