Experiment: Survival; Treatment=FW300; TreatmentDuration=2hrs; Outgrowth=R2A_Kan10_Lactate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABCV34_RS02435 and ABCV34_RS02440 overlap by 1 nucleotides ABCV34_RS02440 and ABCV34_RS02445 are separated by 72 nucleotides ABCV34_RS02445 and ABCV34_RS02450 are separated by 88 nucleotides ABCV34_RS02450 and ABCV34_RS02455 are separated by 71 nucleotides
ABCV34_RS02435: ABCV34_RS02435 - glycosyltransferase family 4 protein, at 543,314 to 544,411
_RS02435
ABCV34_RS02440: ABCV34_RS02440 - polysaccharide deacetylase family protein, at 544,411 to 545,247
_RS02440
ABCV34_RS02445: ABCV34_RS02445 - glycosyltransferase family 2 protein, at 545,320 to 546,066
_RS02445
ABCV34_RS02450: ABCV34_RS02450 - polysaccharide deacetylase family protein, at 546,155 to 546,943
_RS02450
ABCV34_RS02455: ABCV34_RS02455 - glycosyltransferase family 4 protein, at 547,015 to 548,160
_RS02455
Position (kb) 545
546
547 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 544.370 kb on - strand at 545.236 kb on + strand at 545.236 kb on + strand at 545.236 kb on + strand at 545.236 kb on + strand at 545.236 kb on + strand at 545.236 kb on + strand at 545.236 kb on + strand at 545.236 kb on + strand at 545.236 kb on + strand at 545.236 kb on + strand at 545.236 kb on + strand at 545.236 kb on + strand at 545.236 kb on + strand at 545.236 kb on + strand at 545.236 kb on + strand at 545.236 kb on + strand at 545.236 kb on + strand at 545.236 kb on + strand at 545.236 kb on + strand at 545.236 kb on + strand at 545.236 kb on + strand at 545.237 kb on - strand at 545.237 kb on - strand at 545.237 kb on - strand at 545.237 kb on - strand at 545.237 kb on - strand at 545.237 kb on - strand at 545.237 kb on - strand at 545.237 kb on - strand at 545.237 kb on - strand at 545.237 kb on - strand at 545.237 kb on - strand at 545.237 kb on - strand at 545.698 kb on + strand, within ABCV34_RS02445 at 545.768 kb on + strand, within ABCV34_RS02445 at 545.769 kb on - strand, within ABCV34_RS02445 at 545.769 kb on - strand, within ABCV34_RS02445 at 545.769 kb on - strand, within ABCV34_RS02445 at 545.769 kb on - strand, within ABCV34_RS02445 at 545.950 kb on + strand, within ABCV34_RS02445 at 546.025 kb on + strand at 546.035 kb on + strand at 546.036 kb on - strand at 546.036 kb on - strand at 546.036 kb on - strand at 546.036 kb on - strand at 546.143 kb on + strand at 546.143 kb on + strand at 546.143 kb on + strand at 546.144 kb on - strand at 546.145 kb on + strand at 546.145 kb on + strand at 546.145 kb on + strand at 546.145 kb on + strand at 546.145 kb on + strand at 546.145 kb on + strand at 546.146 kb on - strand at 546.146 kb on - strand at 546.146 kb on - strand at 546.146 kb on - strand at 546.146 kb on - strand at 546.146 kb on - strand at 546.173 kb on + strand at 546.173 kb on + strand at 546.173 kb on + strand at 546.173 kb on + strand at 546.173 kb on + strand at 546.173 kb on + strand at 546.173 kb on + strand at 546.174 kb on - strand at 546.223 kb on + strand at 546.312 kb on - strand, within ABCV34_RS02450 at 546.312 kb on - strand, within ABCV34_RS02450 at 546.312 kb on - strand, within ABCV34_RS02450 at 546.366 kb on - strand, within ABCV34_RS02450 at 546.428 kb on + strand, within ABCV34_RS02450 at 546.428 kb on + strand, within ABCV34_RS02450 at 546.428 kb on + strand, within ABCV34_RS02450 at 546.429 kb on - strand, within ABCV34_RS02450 at 546.429 kb on - strand, within ABCV34_RS02450 at 546.672 kb on - strand, within ABCV34_RS02450 at 546.677 kb on + strand, within ABCV34_RS02450 at 546.678 kb on - strand, within ABCV34_RS02450
Per-strain Table
Position Strand Gene LocusTag Fraction Survival; Treatment=FW300; TreatmentDuration=2hrs; Outgrowth=R2A_Kan10_Lactate remove 544,370 - -0.1 545,236 + +2.6 545,236 + +0.0 545,236 + -1.7 545,236 + +0.5 545,236 + -0.5 545,236 + -1.1 545,236 + -0.6 545,236 + -0.3 545,236 + -0.8 545,236 + -1.2 545,236 + -0.6 545,236 + -1.2 545,236 + -1.0 545,236 + -2.3 545,236 + -0.1 545,236 + -0.1 545,236 + -0.6 545,236 + +0.4 545,236 + +0.1 545,236 + +0.7 545,236 + +0.6 545,237 - +0.0 545,237 - -0.7 545,237 - -0.3 545,237 - -0.6 545,237 - +0.4 545,237 - +2.0 545,237 - -1.3 545,237 - +0.6 545,237 - -1.6 545,237 - -0.8 545,237 - +2.0 545,237 - +0.8 545,698 + ABCV34_RS02445 0.51 -2.0 545,768 + ABCV34_RS02445 0.60 +0.0 545,769 - ABCV34_RS02445 0.60 -1.8 545,769 - ABCV34_RS02445 0.60 -2.5 545,769 - ABCV34_RS02445 0.60 -1.4 545,769 - ABCV34_RS02445 0.60 -1.4 545,950 + ABCV34_RS02445 0.84 -0.4 546,025 + -1.7 546,035 + -3.0 546,036 - -1.3 546,036 - -2.2 546,036 - -1.4 546,036 - -1.4 546,143 + +0.7 546,143 + +1.0 546,143 + -2.1 546,144 - -2.1 546,145 + -0.6 546,145 + +0.3 546,145 + -2.1 546,145 + -1.0 546,145 + -1.2 546,145 + -0.3 546,146 - -1.1 546,146 - +1.0 546,146 - +1.0 546,146 - -1.7 546,146 - -0.2 546,146 - -1.0 546,173 + -0.9 546,173 + -2.5 546,173 + +0.0 546,173 + -1.0 546,173 + -1.7 546,173 + -1.8 546,173 + -0.7 546,174 - -2.9 546,223 + -1.6 546,312 - ABCV34_RS02450 0.20 -1.2 546,312 - ABCV34_RS02450 0.20 -1.4 546,312 - ABCV34_RS02450 0.20 -2.5 546,366 - ABCV34_RS02450 0.27 -2.5 546,428 + ABCV34_RS02450 0.35 -2.1 546,428 + ABCV34_RS02450 0.35 +0.0 546,428 + ABCV34_RS02450 0.35 -0.5 546,429 - ABCV34_RS02450 0.35 +0.4 546,429 - ABCV34_RS02450 0.35 -0.5 546,672 - ABCV34_RS02450 0.66 -1.5 546,677 + ABCV34_RS02450 0.66 -1.4 546,678 - ABCV34_RS02450 0.66 -0.9
Or see this region's nucleotide sequence