Strain Fitness in Castellaniella sp019104865 MT123 around ABCV34_RS02430

Experiment: Survival; Treatment=FW300; TreatmentDuration=2hrs; Outgrowth=R2A_Kan10_Lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABCV34_RS02425 and ABCV34_RS02430 overlap by 4 nucleotidesABCV34_RS02430 and ABCV34_RS02435 overlap by 4 nucleotides ABCV34_RS02425: ABCV34_RS02425 - DNA polymerase III subunit alpha, at 539,068 to 542,547 _RS02425 ABCV34_RS02430: ABCV34_RS02430 - glycosyltransferase family 25 protein, at 542,544 to 543,317 _RS02430 ABCV34_RS02435: ABCV34_RS02435 - glycosyltransferase family 4 protein, at 543,314 to 544,411 _RS02435 Position (kb) 542 543 544Strain fitness (log2 ratio) -2 -1 0 1 2 3at 542.700 kb on + strand, within ABCV34_RS02430at 542.700 kb on + strand, within ABCV34_RS02430at 542.701 kb on - strand, within ABCV34_RS02430at 542.701 kb on - strand, within ABCV34_RS02430at 542.781 kb on + strand, within ABCV34_RS02430at 542.781 kb on + strand, within ABCV34_RS02430at 542.781 kb on + strand, within ABCV34_RS02430at 542.781 kb on + strand, within ABCV34_RS02430at 542.782 kb on - strand, within ABCV34_RS02430at 542.782 kb on - strand, within ABCV34_RS02430at 542.925 kb on + strand, within ABCV34_RS02430at 542.925 kb on + strand, within ABCV34_RS02430at 542.925 kb on + strand, within ABCV34_RS02430at 542.925 kb on + strand, within ABCV34_RS02430at 542.951 kb on + strand, within ABCV34_RS02430at 542.951 kb on + strand, within ABCV34_RS02430at 542.951 kb on + strand, within ABCV34_RS02430at 542.952 kb on - strand, within ABCV34_RS02430at 543.052 kb on + strand, within ABCV34_RS02430at 543.052 kb on + strand, within ABCV34_RS02430at 543.052 kb on + strand, within ABCV34_RS02430at 543.053 kb on - strand, within ABCV34_RS02430at 543.076 kb on + strand, within ABCV34_RS02430at 543.076 kb on + strand, within ABCV34_RS02430at 543.076 kb on + strand, within ABCV34_RS02430at 543.076 kb on + strand, within ABCV34_RS02430at 543.076 kb on + strand, within ABCV34_RS02430at 543.077 kb on - strand, within ABCV34_RS02430at 543.077 kb on - strand, within ABCV34_RS02430at 543.077 kb on - strand, within ABCV34_RS02430at 543.077 kb on - strand, within ABCV34_RS02430at 543.077 kb on - strand, within ABCV34_RS02430at 543.077 kb on - strand, within ABCV34_RS02430at 543.077 kb on - strand, within ABCV34_RS02430at 543.240 kb on + strandat 543.241 kb on - strandat 543.241 kb on - strandat 543.241 kb on - strandat 543.241 kb on - strandat 543.241 kb on - strandat 543.275 kb on + strandat 543.276 kb on - strandat 543.374 kb on + strandat 543.374 kb on + strandat 543.374 kb on + strandat 543.375 kb on - strandat 543.376 kb on + strandat 543.376 kb on + strandat 543.376 kb on + strandat 543.376 kb on + strandat 543.377 kb on - strandat 543.377 kb on - strandat 543.494 kb on + strand, within ABCV34_RS02435at 543.494 kb on + strand, within ABCV34_RS02435at 543.494 kb on + strand, within ABCV34_RS02435at 543.494 kb on + strand, within ABCV34_RS02435at 543.494 kb on + strand, within ABCV34_RS02435at 543.494 kb on + strand, within ABCV34_RS02435at 543.494 kb on + strand, within ABCV34_RS02435at 543.494 kb on + strand, within ABCV34_RS02435at 543.494 kb on + strand, within ABCV34_RS02435at 543.494 kb on + strand, within ABCV34_RS02435at 543.494 kb on + strand, within ABCV34_RS02435at 543.494 kb on + strand, within ABCV34_RS02435at 543.494 kb on + strand, within ABCV34_RS02435at 543.495 kb on - strand, within ABCV34_RS02435at 543.495 kb on - strand, within ABCV34_RS02435at 543.495 kb on - strand, within ABCV34_RS02435at 543.495 kb on - strand, within ABCV34_RS02435at 543.495 kb on - strand, within ABCV34_RS02435at 543.495 kb on - strand, within ABCV34_RS02435at 543.495 kb on - strand, within ABCV34_RS02435at 543.495 kb on - strand, within ABCV34_RS02435at 543.496 kb on + strand, within ABCV34_RS02435at 543.497 kb on - strand, within ABCV34_RS02435at 543.497 kb on - strand, within ABCV34_RS02435at 544.221 kb on + strand, within ABCV34_RS02435at 544.222 kb on - strand, within ABCV34_RS02435at 544.290 kb on + strand, within ABCV34_RS02435at 544.290 kb on + strand, within ABCV34_RS02435at 544.290 kb on + strand, within ABCV34_RS02435

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Per-strain Table

Position Strand Gene LocusTag Fraction Survival; Treatment=FW300; TreatmentDuration=2hrs; Outgrowth=R2A_Kan10_Lactate
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542,700 + ABCV34_RS02430 0.20 +2.0
542,700 + ABCV34_RS02430 0.20 -0.6
542,701 - ABCV34_RS02430 0.20 -2.3
542,701 - ABCV34_RS02430 0.20 -1.1
542,781 + ABCV34_RS02430 0.31 -2.1
542,781 + ABCV34_RS02430 0.31 +0.9
542,781 + ABCV34_RS02430 0.31 -0.8
542,781 + ABCV34_RS02430 0.31 +2.0
542,782 - ABCV34_RS02430 0.31 -0.8
542,782 - ABCV34_RS02430 0.31 +0.1
542,925 + ABCV34_RS02430 0.49 +2.0
542,925 + ABCV34_RS02430 0.49 -1.6
542,925 + ABCV34_RS02430 0.49 -1.6
542,925 + ABCV34_RS02430 0.49 -2.0
542,951 + ABCV34_RS02430 0.53 -1.5
542,951 + ABCV34_RS02430 0.53 -1.4
542,951 + ABCV34_RS02430 0.53 -2.3
542,952 - ABCV34_RS02430 0.53 -0.3
543,052 + ABCV34_RS02430 0.66 -1.8
543,052 + ABCV34_RS02430 0.66 -1.4
543,052 + ABCV34_RS02430 0.66 -0.1
543,053 - ABCV34_RS02430 0.66 -0.5
543,076 + ABCV34_RS02430 0.69 -0.9
543,076 + ABCV34_RS02430 0.69 -1.0
543,076 + ABCV34_RS02430 0.69 -2.6
543,076 + ABCV34_RS02430 0.69 -0.6
543,076 + ABCV34_RS02430 0.69 +1.0
543,077 - ABCV34_RS02430 0.69 -1.0
543,077 - ABCV34_RS02430 0.69 -1.1
543,077 - ABCV34_RS02430 0.69 -2.6
543,077 - ABCV34_RS02430 0.69 -1.2
543,077 - ABCV34_RS02430 0.69 +0.4
543,077 - ABCV34_RS02430 0.69 -2.4
543,077 - ABCV34_RS02430 0.69 -0.6
543,240 + -0.3
543,241 - -1.3
543,241 - -1.7
543,241 - +0.4
543,241 - -1.9
543,241 - -0.2
543,275 + -2.3
543,276 - -0.7
543,374 + -0.8
543,374 + -1.3
543,374 + -1.3
543,375 - -0.8
543,376 + -1.7
543,376 + -1.4
543,376 + -0.3
543,376 + -0.6
543,377 - -1.6
543,377 - -0.6
543,494 + ABCV34_RS02435 0.16 +2.0
543,494 + ABCV34_RS02435 0.16 -1.7
543,494 + ABCV34_RS02435 0.16 -0.4
543,494 + ABCV34_RS02435 0.16 +1.0
543,494 + ABCV34_RS02435 0.16 -1.9
543,494 + ABCV34_RS02435 0.16 -0.1
543,494 + ABCV34_RS02435 0.16 +3.0
543,494 + ABCV34_RS02435 0.16 -0.6
543,494 + ABCV34_RS02435 0.16 -0.3
543,494 + ABCV34_RS02435 0.16 +0.4
543,494 + ABCV34_RS02435 0.16 -0.8
543,494 + ABCV34_RS02435 0.16 +0.4
543,494 + ABCV34_RS02435 0.16 -0.3
543,495 - ABCV34_RS02435 0.16 +0.3
543,495 - ABCV34_RS02435 0.16 -1.3
543,495 - ABCV34_RS02435 0.16 -1.7
543,495 - ABCV34_RS02435 0.16 -2.0
543,495 - ABCV34_RS02435 0.16 -1.4
543,495 - ABCV34_RS02435 0.16 +0.4
543,495 - ABCV34_RS02435 0.16 -1.1
543,495 - ABCV34_RS02435 0.16 -0.3
543,496 + ABCV34_RS02435 0.17 -1.0
543,497 - ABCV34_RS02435 0.17 +1.4
543,497 - ABCV34_RS02435 0.17 -2.4
544,221 + ABCV34_RS02435 0.83 -1.4
544,222 - ABCV34_RS02435 0.83 -2.1
544,290 + ABCV34_RS02435 0.89 +1.4
544,290 + ABCV34_RS02435 0.89 -1.1
544,290 + ABCV34_RS02435 0.89 -0.7

Or see this region's nucleotide sequence