Strain Fitness in Castellaniella sp019104865 MT123 around ABCV34_RS01915

Experiment: Survival; Treatment=FW300; TreatmentDuration=2hrs; Outgrowth=R2A_Kan10_Lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABCV34_RS01905 and ABCV34_RS01910 are separated by 135 nucleotidesABCV34_RS01910 and ABCV34_RS01915 are separated by 13 nucleotidesABCV34_RS01915 and ABCV34_RS01920 are separated by 15 nucleotidesABCV34_RS01920 and ABCV34_RS01925 are separated by 95 nucleotides ABCV34_RS01905: ABCV34_RS01905 - polyhydroxyalkanoate synthesis repressor PhaR, at 418,125 to 418,691 _RS01905 ABCV34_RS01910: ABCV34_RS01910 - iron transporter, at 418,827 to 419,363 _RS01910 ABCV34_RS01915: ABCV34_RS01915 - cupredoxin domain-containing protein, at 419,377 to 419,793 _RS01915 ABCV34_RS01920: ABCV34_RS01920 - FTR1 family protein, at 419,809 to 420,666 _RS01920 ABCV34_RS01925: ABCV34_RS01925 - 4Fe-4S binding protein, at 420,762 to 422,192 _RS01925 Position (kb) 419 420Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 418.387 kb on - strand, within ABCV34_RS01905at 418.488 kb on + strand, within ABCV34_RS01905at 418.488 kb on + strand, within ABCV34_RS01905at 418.488 kb on + strand, within ABCV34_RS01905at 418.488 kb on + strand, within ABCV34_RS01905at 418.488 kb on + strand, within ABCV34_RS01905at 418.488 kb on + strand, within ABCV34_RS01905at 418.489 kb on - strand, within ABCV34_RS01905at 418.489 kb on - strand, within ABCV34_RS01905at 418.489 kb on - strand, within ABCV34_RS01905at 418.489 kb on - strand, within ABCV34_RS01905at 418.489 kb on - strand, within ABCV34_RS01905at 418.489 kb on - strand, within ABCV34_RS01905at 418.489 kb on - strand, within ABCV34_RS01905at 418.569 kb on + strand, within ABCV34_RS01905at 418.569 kb on + strand, within ABCV34_RS01905at 418.569 kb on + strand, within ABCV34_RS01905at 418.569 kb on + strand, within ABCV34_RS01905at 418.569 kb on + strand, within ABCV34_RS01905at 418.569 kb on + strand, within ABCV34_RS01905at 418.569 kb on + strand, within ABCV34_RS01905at 418.569 kb on + strand, within ABCV34_RS01905at 418.569 kb on + strand, within ABCV34_RS01905at 418.569 kb on + strand, within ABCV34_RS01905at 418.569 kb on + strand, within ABCV34_RS01905at 418.569 kb on + strand, within ABCV34_RS01905at 418.569 kb on + strand, within ABCV34_RS01905at 418.570 kb on - strand, within ABCV34_RS01905at 418.570 kb on - strand, within ABCV34_RS01905at 418.570 kb on - strand, within ABCV34_RS01905at 418.570 kb on - strand, within ABCV34_RS01905at 418.570 kb on - strand, within ABCV34_RS01905at 418.573 kb on + strand, within ABCV34_RS01905at 418.573 kb on + strand, within ABCV34_RS01905at 418.573 kb on + strand, within ABCV34_RS01905at 418.573 kb on + strand, within ABCV34_RS01905at 418.573 kb on + strand, within ABCV34_RS01905at 418.573 kb on + strand, within ABCV34_RS01905at 418.573 kb on + strand, within ABCV34_RS01905at 418.573 kb on + strand, within ABCV34_RS01905at 418.573 kb on + strand, within ABCV34_RS01905at 418.573 kb on + strand, within ABCV34_RS01905at 418.573 kb on + strand, within ABCV34_RS01905at 418.573 kb on + strand, within ABCV34_RS01905at 418.573 kb on + strand, within ABCV34_RS01905at 418.574 kb on - strand, within ABCV34_RS01905at 418.574 kb on - strand, within ABCV34_RS01905at 418.690 kb on - strandat 418.690 kb on - strandat 418.775 kb on + strandat 418.775 kb on + strandat 418.775 kb on + strandat 418.775 kb on + strandat 418.775 kb on + strandat 418.775 kb on + strandat 418.776 kb on - strandat 418.776 kb on - strandat 418.783 kb on + strandat 418.783 kb on + strandat 418.788 kb on + strandat 418.807 kb on + strandat 418.807 kb on + strandat 418.807 kb on + strandat 418.846 kb on + strandat 418.846 kb on + strandat 418.847 kb on - strandat 418.893 kb on + strand, within ABCV34_RS01910at 418.894 kb on - strand, within ABCV34_RS01910at 418.944 kb on + strand, within ABCV34_RS01910at 418.945 kb on - strand, within ABCV34_RS01910at 418.945 kb on - strand, within ABCV34_RS01910at 418.945 kb on - strand, within ABCV34_RS01910at 419.076 kb on + strand, within ABCV34_RS01910at 419.091 kb on + strand, within ABCV34_RS01910at 419.091 kb on + strand, within ABCV34_RS01910at 419.091 kb on + strand, within ABCV34_RS01910at 419.091 kb on + strand, within ABCV34_RS01910at 419.091 kb on + strand, within ABCV34_RS01910at 419.091 kb on + strand, within ABCV34_RS01910at 419.091 kb on + strand, within ABCV34_RS01910at 419.091 kb on + strand, within ABCV34_RS01910at 419.091 kb on + strand, within ABCV34_RS01910at 419.091 kb on + strand, within ABCV34_RS01910at 419.091 kb on + strand, within ABCV34_RS01910at 419.091 kb on + strand, within ABCV34_RS01910at 419.091 kb on + strand, within ABCV34_RS01910at 419.091 kb on + strand, within ABCV34_RS01910at 419.091 kb on + strand, within ABCV34_RS01910at 419.091 kb on + strand, within ABCV34_RS01910at 419.092 kb on - strand, within ABCV34_RS01910at 419.092 kb on - strand, within ABCV34_RS01910at 419.092 kb on - strand, within ABCV34_RS01910at 419.169 kb on + strand, within ABCV34_RS01910at 419.169 kb on + strand, within ABCV34_RS01910at 419.169 kb on + strand, within ABCV34_RS01910at 419.170 kb on - strand, within ABCV34_RS01910at 419.205 kb on + strand, within ABCV34_RS01910at 419.205 kb on + strand, within ABCV34_RS01910at 419.205 kb on + strand, within ABCV34_RS01910at 419.205 kb on + strand, within ABCV34_RS01910at 419.205 kb on + strand, within ABCV34_RS01910at 419.331 kb on + strandat 419.332 kb on - strandat 419.332 kb on - strandat 419.533 kb on + strand, within ABCV34_RS01915at 419.533 kb on + strand, within ABCV34_RS01915at 419.533 kb on + strand, within ABCV34_RS01915at 419.533 kb on + strand, within ABCV34_RS01915at 419.533 kb on + strand, within ABCV34_RS01915at 419.533 kb on + strand, within ABCV34_RS01915at 419.534 kb on - strand, within ABCV34_RS01915at 419.534 kb on - strand, within ABCV34_RS01915at 419.534 kb on - strand, within ABCV34_RS01915at 419.535 kb on + strand, within ABCV34_RS01915at 419.535 kb on + strand, within ABCV34_RS01915at 419.535 kb on + strand, within ABCV34_RS01915at 419.536 kb on - strand, within ABCV34_RS01915at 419.536 kb on - strand, within ABCV34_RS01915at 419.777 kb on + strandat 419.801 kb on - strandat 419.808 kb on + strandat 419.808 kb on + strandat 419.875 kb on + strandat 419.876 kb on - strandat 419.876 kb on - strandat 420.220 kb on + strand, within ABCV34_RS01920at 420.220 kb on + strand, within ABCV34_RS01920at 420.220 kb on + strand, within ABCV34_RS01920at 420.220 kb on + strand, within ABCV34_RS01920at 420.220 kb on + strand, within ABCV34_RS01920at 420.220 kb on + strand, within ABCV34_RS01920at 420.220 kb on + strand, within ABCV34_RS01920at 420.220 kb on + strand, within ABCV34_RS01920at 420.220 kb on + strand, within ABCV34_RS01920at 420.255 kb on + strand, within ABCV34_RS01920at 420.255 kb on + strand, within ABCV34_RS01920at 420.255 kb on + strand, within ABCV34_RS01920at 420.255 kb on + strand, within ABCV34_RS01920at 420.255 kb on + strand, within ABCV34_RS01920at 420.745 kb on + strandat 420.746 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Survival; Treatment=FW300; TreatmentDuration=2hrs; Outgrowth=R2A_Kan10_Lactate
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418,387 - ABCV34_RS01905 0.46 +2.4
418,488 + ABCV34_RS01905 0.64 -0.1
418,488 + ABCV34_RS01905 0.64 -1.1
418,488 + ABCV34_RS01905 0.64 -1.4
418,488 + ABCV34_RS01905 0.64 -1.4
418,488 + ABCV34_RS01905 0.64 -0.8
418,488 + ABCV34_RS01905 0.64 -0.4
418,489 - ABCV34_RS01905 0.64 -1.3
418,489 - ABCV34_RS01905 0.64 +1.0
418,489 - ABCV34_RS01905 0.64 +0.4
418,489 - ABCV34_RS01905 0.64 -1.1
418,489 - ABCV34_RS01905 0.64 -0.0
418,489 - ABCV34_RS01905 0.64 -1.6
418,489 - ABCV34_RS01905 0.64 -0.9
418,569 + ABCV34_RS01905 0.78 -0.9
418,569 + ABCV34_RS01905 0.78 -2.2
418,569 + ABCV34_RS01905 0.78 -1.5
418,569 + ABCV34_RS01905 0.78 +0.3
418,569 + ABCV34_RS01905 0.78 +0.0
418,569 + ABCV34_RS01905 0.78 -0.9
418,569 + ABCV34_RS01905 0.78 -0.4
418,569 + ABCV34_RS01905 0.78 -0.5
418,569 + ABCV34_RS01905 0.78 +0.4
418,569 + ABCV34_RS01905 0.78 -0.3
418,569 + ABCV34_RS01905 0.78 +0.4
418,569 + ABCV34_RS01905 0.78 -2.9
418,569 + ABCV34_RS01905 0.78 +0.0
418,570 - ABCV34_RS01905 0.78 -0.6
418,570 - ABCV34_RS01905 0.78 +0.8
418,570 - ABCV34_RS01905 0.78 +1.7
418,570 - ABCV34_RS01905 0.78 +0.3
418,570 - ABCV34_RS01905 0.78 -1.6
418,573 + ABCV34_RS01905 0.79 +0.7
418,573 + ABCV34_RS01905 0.79 -0.7
418,573 + ABCV34_RS01905 0.79 +0.4
418,573 + ABCV34_RS01905 0.79 -0.5
418,573 + ABCV34_RS01905 0.79 -0.4
418,573 + ABCV34_RS01905 0.79 -0.8
418,573 + ABCV34_RS01905 0.79 -0.5
418,573 + ABCV34_RS01905 0.79 +1.2
418,573 + ABCV34_RS01905 0.79 -0.4
418,573 + ABCV34_RS01905 0.79 -1.0
418,573 + ABCV34_RS01905 0.79 -1.3
418,573 + ABCV34_RS01905 0.79 -1.5
418,573 + ABCV34_RS01905 0.79 -0.6
418,574 - ABCV34_RS01905 0.79 -0.4
418,574 - ABCV34_RS01905 0.79 -2.5
418,690 - -1.0
418,690 - -1.6
418,775 + -0.1
418,775 + -0.7
418,775 + -4.1
418,775 + +0.1
418,775 + -0.8
418,775 + +0.7
418,776 - -2.4
418,776 - -0.6
418,783 + +1.3
418,783 + +1.0
418,788 + -1.3
418,807 + -2.0
418,807 + -0.2
418,807 + -2.8
418,846 + -1.6
418,846 + -1.0
418,847 - -0.6
418,893 + ABCV34_RS01910 0.12 -2.3
418,894 - ABCV34_RS01910 0.12 -1.4
418,944 + ABCV34_RS01910 0.22 -1.7
418,945 - ABCV34_RS01910 0.22 -1.6
418,945 - ABCV34_RS01910 0.22 -2.1
418,945 - ABCV34_RS01910 0.22 -1.3
419,076 + ABCV34_RS01910 0.46 -1.1
419,091 + ABCV34_RS01910 0.49 -1.8
419,091 + ABCV34_RS01910 0.49 -1.3
419,091 + ABCV34_RS01910 0.49 -3.1
419,091 + ABCV34_RS01910 0.49 -2.8
419,091 + ABCV34_RS01910 0.49 -0.4
419,091 + ABCV34_RS01910 0.49 +3.3
419,091 + ABCV34_RS01910 0.49 -0.3
419,091 + ABCV34_RS01910 0.49 +0.0
419,091 + ABCV34_RS01910 0.49 -1.4
419,091 + ABCV34_RS01910 0.49 -1.5
419,091 + ABCV34_RS01910 0.49 -1.7
419,091 + ABCV34_RS01910 0.49 -0.6
419,091 + ABCV34_RS01910 0.49 -0.7
419,091 + ABCV34_RS01910 0.49 -2.9
419,091 + ABCV34_RS01910 0.49 -1.3
419,091 + ABCV34_RS01910 0.49 -1.6
419,092 - ABCV34_RS01910 0.49 -2.1
419,092 - ABCV34_RS01910 0.49 -1.0
419,092 - ABCV34_RS01910 0.49 -1.1
419,169 + ABCV34_RS01910 0.64 -0.4
419,169 + ABCV34_RS01910 0.64 +0.1
419,169 + ABCV34_RS01910 0.64 +1.0
419,170 - ABCV34_RS01910 0.64 -2.0
419,205 + ABCV34_RS01910 0.70 +1.0
419,205 + ABCV34_RS01910 0.70 +2.0
419,205 + ABCV34_RS01910 0.70 -0.7
419,205 + ABCV34_RS01910 0.70 -0.8
419,205 + ABCV34_RS01910 0.70 -1.5
419,331 + -0.3
419,332 - -0.6
419,332 - -2.1
419,533 + ABCV34_RS01915 0.37 -1.7
419,533 + ABCV34_RS01915 0.37 +0.7
419,533 + ABCV34_RS01915 0.37 -1.6
419,533 + ABCV34_RS01915 0.37 -1.4
419,533 + ABCV34_RS01915 0.37 +0.6
419,533 + ABCV34_RS01915 0.37 -1.3
419,534 - ABCV34_RS01915 0.38 -0.8
419,534 - ABCV34_RS01915 0.38 -1.0
419,534 - ABCV34_RS01915 0.38 -0.1
419,535 + ABCV34_RS01915 0.38 -2.6
419,535 + ABCV34_RS01915 0.38 +0.0
419,535 + ABCV34_RS01915 0.38 -1.3
419,536 - ABCV34_RS01915 0.38 -1.9
419,536 - ABCV34_RS01915 0.38 -0.8
419,777 + -2.3
419,801 - -1.1
419,808 + -0.9
419,808 + +0.9
419,875 + +2.0
419,876 - -1.3
419,876 - -0.8
420,220 + ABCV34_RS01920 0.48 +0.9
420,220 + ABCV34_RS01920 0.48 -2.5
420,220 + ABCV34_RS01920 0.48 -3.2
420,220 + ABCV34_RS01920 0.48 -2.0
420,220 + ABCV34_RS01920 0.48 +2.0
420,220 + ABCV34_RS01920 0.48 -2.4
420,220 + ABCV34_RS01920 0.48 +2.4
420,220 + ABCV34_RS01920 0.48 +0.0
420,220 + ABCV34_RS01920 0.48 +1.0
420,255 + ABCV34_RS01920 0.52 +1.0
420,255 + ABCV34_RS01920 0.52 -1.1
420,255 + ABCV34_RS01920 0.52 -1.8
420,255 + ABCV34_RS01920 0.52 +1.0
420,255 + ABCV34_RS01920 0.52 -0.3
420,745 + -0.6
420,746 - -1.1

Or see this region's nucleotide sequence