Experiment: Survival; Treatment=FW300; TreatmentDuration=2hrs; Outgrowth=R2A_Kan10_Lactate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABCV34_RS01900 and ABCV34_RS01905 are separated by 5 nucleotides ABCV34_RS01905 and ABCV34_RS01910 are separated by 135 nucleotides ABCV34_RS01910 and ABCV34_RS01915 are separated by 13 nucleotides ABCV34_RS01915 and ABCV34_RS01920 are separated by 15 nucleotides
ABCV34_RS01900: ABCV34_RS01900 - acetoacetyl-CoA reductase, at 417,382 to 418,119
_RS01900
ABCV34_RS01905: ABCV34_RS01905 - polyhydroxyalkanoate synthesis repressor PhaR, at 418,125 to 418,691
_RS01905
ABCV34_RS01910: ABCV34_RS01910 - iron transporter, at 418,827 to 419,363
_RS01910
ABCV34_RS01915: ABCV34_RS01915 - cupredoxin domain-containing protein, at 419,377 to 419,793
_RS01915
ABCV34_RS01920: ABCV34_RS01920 - FTR1 family protein, at 419,809 to 420,666
_RS01920
Position (kb) 418
419
420 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 417.835 kb on + strand, within ABCV34_RS01900 at 417.835 kb on + strand, within ABCV34_RS01900 at 417.835 kb on + strand, within ABCV34_RS01900 at 417.835 kb on + strand, within ABCV34_RS01900 at 417.835 kb on + strand, within ABCV34_RS01900 at 417.835 kb on + strand, within ABCV34_RS01900 at 417.835 kb on + strand, within ABCV34_RS01900 at 417.835 kb on + strand, within ABCV34_RS01900 at 417.835 kb on + strand, within ABCV34_RS01900 at 417.835 kb on + strand, within ABCV34_RS01900 at 417.836 kb on - strand, within ABCV34_RS01900 at 417.836 kb on - strand, within ABCV34_RS01900 at 417.836 kb on - strand, within ABCV34_RS01900 at 417.931 kb on + strand, within ABCV34_RS01900 at 417.931 kb on + strand, within ABCV34_RS01900 at 417.931 kb on + strand, within ABCV34_RS01900 at 417.931 kb on + strand, within ABCV34_RS01900 at 417.931 kb on + strand, within ABCV34_RS01900 at 417.931 kb on + strand, within ABCV34_RS01900 at 417.932 kb on - strand, within ABCV34_RS01900 at 417.932 kb on - strand, within ABCV34_RS01900 at 417.932 kb on - strand, within ABCV34_RS01900 at 418.142 kb on + strand at 418.142 kb on + strand at 418.142 kb on + strand at 418.143 kb on - strand at 418.143 kb on - strand at 418.143 kb on - strand at 418.143 kb on - strand at 418.188 kb on + strand, within ABCV34_RS01905 at 418.188 kb on + strand, within ABCV34_RS01905 at 418.189 kb on - strand, within ABCV34_RS01905 at 418.189 kb on - strand, within ABCV34_RS01905 at 418.209 kb on + strand, within ABCV34_RS01905 at 418.209 kb on + strand, within ABCV34_RS01905 at 418.209 kb on + strand, within ABCV34_RS01905 at 418.209 kb on + strand, within ABCV34_RS01905 at 418.209 kb on + strand, within ABCV34_RS01905 at 418.210 kb on - strand, within ABCV34_RS01905 at 418.210 kb on - strand, within ABCV34_RS01905 at 418.210 kb on - strand, within ABCV34_RS01905 at 418.210 kb on - strand, within ABCV34_RS01905 at 418.210 kb on - strand, within ABCV34_RS01905 at 418.210 kb on - strand, within ABCV34_RS01905 at 418.210 kb on - strand, within ABCV34_RS01905 at 418.210 kb on - strand, within ABCV34_RS01905 at 418.387 kb on - strand, within ABCV34_RS01905 at 418.488 kb on + strand, within ABCV34_RS01905 at 418.488 kb on + strand, within ABCV34_RS01905 at 418.488 kb on + strand, within ABCV34_RS01905 at 418.488 kb on + strand, within ABCV34_RS01905 at 418.488 kb on + strand, within ABCV34_RS01905 at 418.488 kb on + strand, within ABCV34_RS01905 at 418.489 kb on - strand, within ABCV34_RS01905 at 418.489 kb on - strand, within ABCV34_RS01905 at 418.489 kb on - strand, within ABCV34_RS01905 at 418.489 kb on - strand, within ABCV34_RS01905 at 418.489 kb on - strand, within ABCV34_RS01905 at 418.489 kb on - strand, within ABCV34_RS01905 at 418.489 kb on - strand, within ABCV34_RS01905 at 418.569 kb on + strand, within ABCV34_RS01905 at 418.569 kb on + strand, within ABCV34_RS01905 at 418.569 kb on + strand, within ABCV34_RS01905 at 418.569 kb on + strand, within ABCV34_RS01905 at 418.569 kb on + strand, within ABCV34_RS01905 at 418.569 kb on + strand, within ABCV34_RS01905 at 418.569 kb on + strand, within ABCV34_RS01905 at 418.569 kb on + strand, within ABCV34_RS01905 at 418.569 kb on + strand, within ABCV34_RS01905 at 418.569 kb on + strand, within ABCV34_RS01905 at 418.569 kb on + strand, within ABCV34_RS01905 at 418.569 kb on + strand, within ABCV34_RS01905 at 418.569 kb on + strand, within ABCV34_RS01905 at 418.570 kb on - strand, within ABCV34_RS01905 at 418.570 kb on - strand, within ABCV34_RS01905 at 418.570 kb on - strand, within ABCV34_RS01905 at 418.570 kb on - strand, within ABCV34_RS01905 at 418.570 kb on - strand, within ABCV34_RS01905 at 418.573 kb on + strand, within ABCV34_RS01905 at 418.573 kb on + strand, within ABCV34_RS01905 at 418.573 kb on + strand, within ABCV34_RS01905 at 418.573 kb on + strand, within ABCV34_RS01905 at 418.573 kb on + strand, within ABCV34_RS01905 at 418.573 kb on + strand, within ABCV34_RS01905 at 418.573 kb on + strand, within ABCV34_RS01905 at 418.573 kb on + strand, within ABCV34_RS01905 at 418.573 kb on + strand, within ABCV34_RS01905 at 418.573 kb on + strand, within ABCV34_RS01905 at 418.573 kb on + strand, within ABCV34_RS01905 at 418.573 kb on + strand, within ABCV34_RS01905 at 418.573 kb on + strand, within ABCV34_RS01905 at 418.574 kb on - strand, within ABCV34_RS01905 at 418.574 kb on - strand, within ABCV34_RS01905 at 418.690 kb on - strand at 418.690 kb on - strand at 418.775 kb on + strand at 418.775 kb on + strand at 418.775 kb on + strand at 418.775 kb on + strand at 418.775 kb on + strand at 418.775 kb on + strand at 418.776 kb on - strand at 418.776 kb on - strand at 418.783 kb on + strand at 418.783 kb on + strand at 418.788 kb on + strand at 418.807 kb on + strand at 418.807 kb on + strand at 418.807 kb on + strand at 418.846 kb on + strand at 418.846 kb on + strand at 418.847 kb on - strand at 418.893 kb on + strand, within ABCV34_RS01910 at 418.894 kb on - strand, within ABCV34_RS01910 at 418.944 kb on + strand, within ABCV34_RS01910 at 418.945 kb on - strand, within ABCV34_RS01910 at 418.945 kb on - strand, within ABCV34_RS01910 at 418.945 kb on - strand, within ABCV34_RS01910 at 419.076 kb on + strand, within ABCV34_RS01910 at 419.091 kb on + strand, within ABCV34_RS01910 at 419.091 kb on + strand, within ABCV34_RS01910 at 419.091 kb on + strand, within ABCV34_RS01910 at 419.091 kb on + strand, within ABCV34_RS01910 at 419.091 kb on + strand, within ABCV34_RS01910 at 419.091 kb on + strand, within ABCV34_RS01910 at 419.091 kb on + strand, within ABCV34_RS01910 at 419.091 kb on + strand, within ABCV34_RS01910 at 419.091 kb on + strand, within ABCV34_RS01910 at 419.091 kb on + strand, within ABCV34_RS01910 at 419.091 kb on + strand, within ABCV34_RS01910 at 419.091 kb on + strand, within ABCV34_RS01910 at 419.091 kb on + strand, within ABCV34_RS01910 at 419.091 kb on + strand, within ABCV34_RS01910 at 419.091 kb on + strand, within ABCV34_RS01910 at 419.091 kb on + strand, within ABCV34_RS01910 at 419.092 kb on - strand, within ABCV34_RS01910 at 419.092 kb on - strand, within ABCV34_RS01910 at 419.092 kb on - strand, within ABCV34_RS01910 at 419.169 kb on + strand, within ABCV34_RS01910 at 419.169 kb on + strand, within ABCV34_RS01910 at 419.169 kb on + strand, within ABCV34_RS01910 at 419.170 kb on - strand, within ABCV34_RS01910 at 419.205 kb on + strand, within ABCV34_RS01910 at 419.205 kb on + strand, within ABCV34_RS01910 at 419.205 kb on + strand, within ABCV34_RS01910 at 419.205 kb on + strand, within ABCV34_RS01910 at 419.205 kb on + strand, within ABCV34_RS01910 at 419.331 kb on + strand at 419.332 kb on - strand at 419.332 kb on - strand at 419.533 kb on + strand, within ABCV34_RS01915 at 419.533 kb on + strand, within ABCV34_RS01915 at 419.533 kb on + strand, within ABCV34_RS01915 at 419.533 kb on + strand, within ABCV34_RS01915 at 419.533 kb on + strand, within ABCV34_RS01915 at 419.533 kb on + strand, within ABCV34_RS01915 at 419.534 kb on - strand, within ABCV34_RS01915 at 419.534 kb on - strand, within ABCV34_RS01915 at 419.534 kb on - strand, within ABCV34_RS01915 at 419.535 kb on + strand, within ABCV34_RS01915 at 419.535 kb on + strand, within ABCV34_RS01915 at 419.535 kb on + strand, within ABCV34_RS01915 at 419.536 kb on - strand, within ABCV34_RS01915 at 419.536 kb on - strand, within ABCV34_RS01915 at 419.777 kb on + strand at 419.801 kb on - strand at 419.808 kb on + strand at 419.808 kb on + strand at 419.875 kb on + strand at 419.876 kb on - strand at 419.876 kb on - strand at 420.220 kb on + strand, within ABCV34_RS01920 at 420.220 kb on + strand, within ABCV34_RS01920 at 420.220 kb on + strand, within ABCV34_RS01920 at 420.220 kb on + strand, within ABCV34_RS01920 at 420.220 kb on + strand, within ABCV34_RS01920 at 420.220 kb on + strand, within ABCV34_RS01920 at 420.220 kb on + strand, within ABCV34_RS01920 at 420.220 kb on + strand, within ABCV34_RS01920 at 420.220 kb on + strand, within ABCV34_RS01920 at 420.255 kb on + strand, within ABCV34_RS01920 at 420.255 kb on + strand, within ABCV34_RS01920 at 420.255 kb on + strand, within ABCV34_RS01920 at 420.255 kb on + strand, within ABCV34_RS01920 at 420.255 kb on + strand, within ABCV34_RS01920
Per-strain Table
Position Strand Gene LocusTag Fraction Survival; Treatment=FW300; TreatmentDuration=2hrs; Outgrowth=R2A_Kan10_Lactate remove 417,835 + ABCV34_RS01900 0.61 +0.1 417,835 + ABCV34_RS01900 0.61 -2.0 417,835 + ABCV34_RS01900 0.61 -1.8 417,835 + ABCV34_RS01900 0.61 -0.3 417,835 + ABCV34_RS01900 0.61 -0.1 417,835 + ABCV34_RS01900 0.61 -0.4 417,835 + ABCV34_RS01900 0.61 -1.3 417,835 + ABCV34_RS01900 0.61 -0.0 417,835 + ABCV34_RS01900 0.61 +0.3 417,835 + ABCV34_RS01900 0.61 +0.9 417,836 - ABCV34_RS01900 0.62 -0.3 417,836 - ABCV34_RS01900 0.62 +0.2 417,836 - ABCV34_RS01900 0.62 +0.4 417,931 + ABCV34_RS01900 0.74 +0.7 417,931 + ABCV34_RS01900 0.74 -1.2 417,931 + ABCV34_RS01900 0.74 -0.4 417,931 + ABCV34_RS01900 0.74 +0.1 417,931 + ABCV34_RS01900 0.74 -0.5 417,931 + ABCV34_RS01900 0.74 -1.1 417,932 - ABCV34_RS01900 0.75 +0.7 417,932 - ABCV34_RS01900 0.75 +0.4 417,932 - ABCV34_RS01900 0.75 -1.5 418,142 + -1.1 418,142 + -1.3 418,142 + +1.0 418,143 - -1.1 418,143 - -2.2 418,143 - -2.8 418,143 - +0.4 418,188 + ABCV34_RS01905 0.11 -2.9 418,188 + ABCV34_RS01905 0.11 +2.0 418,189 - ABCV34_RS01905 0.11 -1.6 418,189 - ABCV34_RS01905 0.11 -2.4 418,209 + ABCV34_RS01905 0.15 -0.1 418,209 + ABCV34_RS01905 0.15 +0.4 418,209 + ABCV34_RS01905 0.15 +0.3 418,209 + ABCV34_RS01905 0.15 +1.4 418,209 + ABCV34_RS01905 0.15 +0.0 418,210 - ABCV34_RS01905 0.15 +0.8 418,210 - ABCV34_RS01905 0.15 -1.0 418,210 - ABCV34_RS01905 0.15 +1.3 418,210 - ABCV34_RS01905 0.15 -0.3 418,210 - ABCV34_RS01905 0.15 -0.2 418,210 - ABCV34_RS01905 0.15 +0.0 418,210 - ABCV34_RS01905 0.15 -0.1 418,210 - ABCV34_RS01905 0.15 -0.4 418,387 - ABCV34_RS01905 0.46 +2.4 418,488 + ABCV34_RS01905 0.64 -0.1 418,488 + ABCV34_RS01905 0.64 -1.1 418,488 + ABCV34_RS01905 0.64 -1.4 418,488 + ABCV34_RS01905 0.64 -1.4 418,488 + ABCV34_RS01905 0.64 -0.8 418,488 + ABCV34_RS01905 0.64 -0.4 418,489 - ABCV34_RS01905 0.64 -1.3 418,489 - ABCV34_RS01905 0.64 +1.0 418,489 - ABCV34_RS01905 0.64 +0.4 418,489 - ABCV34_RS01905 0.64 -1.1 418,489 - ABCV34_RS01905 0.64 -0.0 418,489 - ABCV34_RS01905 0.64 -1.6 418,489 - ABCV34_RS01905 0.64 -0.9 418,569 + ABCV34_RS01905 0.78 -0.9 418,569 + ABCV34_RS01905 0.78 -2.2 418,569 + ABCV34_RS01905 0.78 -1.5 418,569 + ABCV34_RS01905 0.78 +0.3 418,569 + ABCV34_RS01905 0.78 +0.0 418,569 + ABCV34_RS01905 0.78 -0.9 418,569 + ABCV34_RS01905 0.78 -0.4 418,569 + ABCV34_RS01905 0.78 -0.5 418,569 + ABCV34_RS01905 0.78 +0.4 418,569 + ABCV34_RS01905 0.78 -0.3 418,569 + ABCV34_RS01905 0.78 +0.4 418,569 + ABCV34_RS01905 0.78 -2.9 418,569 + ABCV34_RS01905 0.78 +0.0 418,570 - ABCV34_RS01905 0.78 -0.6 418,570 - ABCV34_RS01905 0.78 +0.8 418,570 - ABCV34_RS01905 0.78 +1.7 418,570 - ABCV34_RS01905 0.78 +0.3 418,570 - ABCV34_RS01905 0.78 -1.6 418,573 + ABCV34_RS01905 0.79 +0.7 418,573 + ABCV34_RS01905 0.79 -0.7 418,573 + ABCV34_RS01905 0.79 +0.4 418,573 + ABCV34_RS01905 0.79 -0.5 418,573 + ABCV34_RS01905 0.79 -0.4 418,573 + ABCV34_RS01905 0.79 -0.8 418,573 + ABCV34_RS01905 0.79 -0.5 418,573 + ABCV34_RS01905 0.79 +1.2 418,573 + ABCV34_RS01905 0.79 -0.4 418,573 + ABCV34_RS01905 0.79 -1.0 418,573 + ABCV34_RS01905 0.79 -1.3 418,573 + ABCV34_RS01905 0.79 -1.5 418,573 + ABCV34_RS01905 0.79 -0.6 418,574 - ABCV34_RS01905 0.79 -0.4 418,574 - ABCV34_RS01905 0.79 -2.5 418,690 - -1.0 418,690 - -1.6 418,775 + -0.1 418,775 + -0.7 418,775 + -4.1 418,775 + +0.1 418,775 + -0.8 418,775 + +0.7 418,776 - -2.4 418,776 - -0.6 418,783 + +1.3 418,783 + +1.0 418,788 + -1.3 418,807 + -2.0 418,807 + -0.2 418,807 + -2.8 418,846 + -1.6 418,846 + -1.0 418,847 - -0.6 418,893 + ABCV34_RS01910 0.12 -2.3 418,894 - ABCV34_RS01910 0.12 -1.4 418,944 + ABCV34_RS01910 0.22 -1.7 418,945 - ABCV34_RS01910 0.22 -1.6 418,945 - ABCV34_RS01910 0.22 -2.1 418,945 - ABCV34_RS01910 0.22 -1.3 419,076 + ABCV34_RS01910 0.46 -1.1 419,091 + ABCV34_RS01910 0.49 -1.8 419,091 + ABCV34_RS01910 0.49 -1.3 419,091 + ABCV34_RS01910 0.49 -3.1 419,091 + ABCV34_RS01910 0.49 -2.8 419,091 + ABCV34_RS01910 0.49 -0.4 419,091 + ABCV34_RS01910 0.49 +3.3 419,091 + ABCV34_RS01910 0.49 -0.3 419,091 + ABCV34_RS01910 0.49 +0.0 419,091 + ABCV34_RS01910 0.49 -1.4 419,091 + ABCV34_RS01910 0.49 -1.5 419,091 + ABCV34_RS01910 0.49 -1.7 419,091 + ABCV34_RS01910 0.49 -0.6 419,091 + ABCV34_RS01910 0.49 -0.7 419,091 + ABCV34_RS01910 0.49 -2.9 419,091 + ABCV34_RS01910 0.49 -1.3 419,091 + ABCV34_RS01910 0.49 -1.6 419,092 - ABCV34_RS01910 0.49 -2.1 419,092 - ABCV34_RS01910 0.49 -1.0 419,092 - ABCV34_RS01910 0.49 -1.1 419,169 + ABCV34_RS01910 0.64 -0.4 419,169 + ABCV34_RS01910 0.64 +0.1 419,169 + ABCV34_RS01910 0.64 +1.0 419,170 - ABCV34_RS01910 0.64 -2.0 419,205 + ABCV34_RS01910 0.70 +1.0 419,205 + ABCV34_RS01910 0.70 +2.0 419,205 + ABCV34_RS01910 0.70 -0.7 419,205 + ABCV34_RS01910 0.70 -0.8 419,205 + ABCV34_RS01910 0.70 -1.5 419,331 + -0.3 419,332 - -0.6 419,332 - -2.1 419,533 + ABCV34_RS01915 0.37 -1.7 419,533 + ABCV34_RS01915 0.37 +0.7 419,533 + ABCV34_RS01915 0.37 -1.6 419,533 + ABCV34_RS01915 0.37 -1.4 419,533 + ABCV34_RS01915 0.37 +0.6 419,533 + ABCV34_RS01915 0.37 -1.3 419,534 - ABCV34_RS01915 0.38 -0.8 419,534 - ABCV34_RS01915 0.38 -1.0 419,534 - ABCV34_RS01915 0.38 -0.1 419,535 + ABCV34_RS01915 0.38 -2.6 419,535 + ABCV34_RS01915 0.38 +0.0 419,535 + ABCV34_RS01915 0.38 -1.3 419,536 - ABCV34_RS01915 0.38 -1.9 419,536 - ABCV34_RS01915 0.38 -0.8 419,777 + -2.3 419,801 - -1.1 419,808 + -0.9 419,808 + +0.9 419,875 + +2.0 419,876 - -1.3 419,876 - -0.8 420,220 + ABCV34_RS01920 0.48 +0.9 420,220 + ABCV34_RS01920 0.48 -2.5 420,220 + ABCV34_RS01920 0.48 -3.2 420,220 + ABCV34_RS01920 0.48 -2.0 420,220 + ABCV34_RS01920 0.48 +2.0 420,220 + ABCV34_RS01920 0.48 -2.4 420,220 + ABCV34_RS01920 0.48 +2.4 420,220 + ABCV34_RS01920 0.48 +0.0 420,220 + ABCV34_RS01920 0.48 +1.0 420,255 + ABCV34_RS01920 0.52 +1.0 420,255 + ABCV34_RS01920 0.52 -1.1 420,255 + ABCV34_RS01920 0.52 -1.8 420,255 + ABCV34_RS01920 0.52 +1.0 420,255 + ABCV34_RS01920 0.52 -0.3
Or see this region's nucleotide sequence