Experiment: Survival; Treatment=FW300; TreatmentDuration=2hrs; Outgrowth=R2A_Kan10_Lactate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABCV34_RS01800 and ABCV34_RS01805 are separated by 194 nucleotides ABCV34_RS01805 and ABCV34_RS01810 are separated by 28 nucleotides ABCV34_RS01810 and ABCV34_RS01815 are separated by 5 nucleotides
ABCV34_RS01800: ABCV34_RS01800 - CaiB/BaiF CoA-transferase family protein, at 391,402 to 392,622
_RS01800
ABCV34_RS01805: ABCV34_RS01805 - PepSY domain-containing protein, at 392,817 to 393,260
_RS01805
ABCV34_RS01810: ABCV34_RS01810 - DUF2271 domain-containing protein, at 393,289 to 393,765
_RS01810
ABCV34_RS01815: ABCV34_RS01815 - PepSY domain-containing protein, at 393,771 to 395,975
_RS01815
Position (kb) 392
393
394 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 391.834 kb on + strand, within ABCV34_RS01800 at 391.954 kb on + strand, within ABCV34_RS01800 at 391.955 kb on - strand, within ABCV34_RS01800 at 391.955 kb on - strand, within ABCV34_RS01800 at 391.955 kb on - strand, within ABCV34_RS01800 at 391.955 kb on - strand, within ABCV34_RS01800 at 391.955 kb on - strand, within ABCV34_RS01800 at 392.006 kb on + strand, within ABCV34_RS01800 at 392.006 kb on + strand, within ABCV34_RS01800 at 392.006 kb on + strand, within ABCV34_RS01800 at 392.006 kb on + strand, within ABCV34_RS01800 at 392.007 kb on - strand, within ABCV34_RS01800 at 392.007 kb on - strand, within ABCV34_RS01800 at 392.007 kb on - strand, within ABCV34_RS01800 at 392.007 kb on - strand, within ABCV34_RS01800 at 392.007 kb on - strand, within ABCV34_RS01800 at 392.007 kb on - strand, within ABCV34_RS01800 at 392.007 kb on - strand, within ABCV34_RS01800 at 392.007 kb on - strand, within ABCV34_RS01800 at 392.007 kb on - strand, within ABCV34_RS01800 at 392.074 kb on + strand, within ABCV34_RS01800 at 392.074 kb on + strand, within ABCV34_RS01800 at 392.074 kb on + strand, within ABCV34_RS01800 at 392.074 kb on + strand, within ABCV34_RS01800 at 392.075 kb on - strand, within ABCV34_RS01800 at 392.075 kb on - strand, within ABCV34_RS01800 at 392.075 kb on - strand, within ABCV34_RS01800 at 392.075 kb on - strand, within ABCV34_RS01800 at 392.075 kb on - strand, within ABCV34_RS01800 at 392.075 kb on - strand, within ABCV34_RS01800 at 392.075 kb on - strand, within ABCV34_RS01800 at 392.135 kb on - strand, within ABCV34_RS01800 at 392.161 kb on + strand, within ABCV34_RS01800 at 392.161 kb on + strand, within ABCV34_RS01800 at 392.161 kb on + strand, within ABCV34_RS01800 at 392.161 kb on + strand, within ABCV34_RS01800 at 392.161 kb on + strand, within ABCV34_RS01800 at 392.162 kb on - strand, within ABCV34_RS01800 at 392.162 kb on - strand, within ABCV34_RS01800 at 392.326 kb on - strand, within ABCV34_RS01800 at 392.512 kb on + strand at 392.512 kb on + strand at 392.512 kb on + strand at 392.544 kb on + strand at 392.544 kb on + strand at 392.544 kb on + strand at 392.544 kb on + strand at 392.544 kb on + strand at 392.544 kb on + strand at 392.545 kb on - strand at 392.545 kb on - strand at 392.545 kb on - strand at 392.545 kb on - strand at 392.546 kb on - strand at 392.701 kb on + strand at 392.701 kb on + strand at 392.701 kb on + strand at 392.701 kb on + strand at 392.701 kb on + strand at 392.701 kb on + strand at 392.701 kb on + strand at 392.701 kb on + strand at 392.702 kb on - strand at 392.702 kb on - strand at 392.702 kb on - strand at 392.702 kb on - strand at 392.702 kb on - strand at 392.760 kb on + strand at 392.761 kb on - strand at 392.761 kb on - strand at 392.761 kb on - strand at 392.761 kb on - strand at 393.003 kb on + strand, within ABCV34_RS01805 at 393.274 kb on + strand at 393.274 kb on + strand at 393.274 kb on + strand at 393.275 kb on - strand at 393.275 kb on - strand at 393.275 kb on - strand at 393.299 kb on + strand at 393.299 kb on + strand at 393.299 kb on + strand at 393.299 kb on + strand at 393.300 kb on - strand at 393.300 kb on - strand at 393.300 kb on - strand at 393.300 kb on - strand at 393.300 kb on - strand at 393.300 kb on - strand at 393.391 kb on + strand, within ABCV34_RS01810 at 393.391 kb on + strand, within ABCV34_RS01810 at 393.392 kb on - strand, within ABCV34_RS01810 at 393.392 kb on - strand, within ABCV34_RS01810 at 393.409 kb on + strand, within ABCV34_RS01810 at 393.409 kb on + strand, within ABCV34_RS01810 at 393.410 kb on - strand, within ABCV34_RS01810 at 393.422 kb on - strand, within ABCV34_RS01810 at 393.445 kb on + strand, within ABCV34_RS01810 at 393.446 kb on - strand, within ABCV34_RS01810 at 393.446 kb on - strand, within ABCV34_RS01810 at 393.446 kb on - strand, within ABCV34_RS01810 at 393.446 kb on - strand, within ABCV34_RS01810 at 393.446 kb on - strand, within ABCV34_RS01810 at 393.484 kb on + strand, within ABCV34_RS01810 at 393.484 kb on + strand, within ABCV34_RS01810 at 393.484 kb on + strand, within ABCV34_RS01810 at 393.485 kb on - strand, within ABCV34_RS01810 at 393.485 kb on - strand, within ABCV34_RS01810 at 393.485 kb on - strand, within ABCV34_RS01810 at 393.487 kb on + strand, within ABCV34_RS01810 at 393.488 kb on - strand, within ABCV34_RS01810 at 393.488 kb on - strand, within ABCV34_RS01810 at 393.488 kb on - strand, within ABCV34_RS01810 at 393.488 kb on - strand, within ABCV34_RS01810 at 393.488 kb on - strand, within ABCV34_RS01810 at 393.751 kb on + strand at 393.752 kb on - strand at 393.996 kb on + strand, within ABCV34_RS01815 at 393.996 kb on + strand, within ABCV34_RS01815 at 393.996 kb on + strand, within ABCV34_RS01815 at 393.996 kb on + strand, within ABCV34_RS01815 at 393.996 kb on + strand, within ABCV34_RS01815 at 393.997 kb on - strand, within ABCV34_RS01815 at 394.065 kb on + strand, within ABCV34_RS01815
Per-strain Table
Position Strand Gene LocusTag Fraction Survival; Treatment=FW300; TreatmentDuration=2hrs; Outgrowth=R2A_Kan10_Lactate remove 391,834 + ABCV34_RS01800 0.35 -0.4 391,954 + ABCV34_RS01800 0.45 -0.1 391,955 - ABCV34_RS01800 0.45 -1.4 391,955 - ABCV34_RS01800 0.45 -0.8 391,955 - ABCV34_RS01800 0.45 +0.6 391,955 - ABCV34_RS01800 0.45 +0.5 391,955 - ABCV34_RS01800 0.45 -0.4 392,006 + ABCV34_RS01800 0.49 -1.5 392,006 + ABCV34_RS01800 0.49 +0.7 392,006 + ABCV34_RS01800 0.49 -1.3 392,006 + ABCV34_RS01800 0.49 -0.3 392,007 - ABCV34_RS01800 0.50 +1.1 392,007 - ABCV34_RS01800 0.50 -2.5 392,007 - ABCV34_RS01800 0.50 -0.3 392,007 - ABCV34_RS01800 0.50 -1.0 392,007 - ABCV34_RS01800 0.50 -0.0 392,007 - ABCV34_RS01800 0.50 +0.0 392,007 - ABCV34_RS01800 0.50 +0.4 392,007 - ABCV34_RS01800 0.50 -2.4 392,007 - ABCV34_RS01800 0.50 -1.4 392,074 + ABCV34_RS01800 0.55 -0.8 392,074 + ABCV34_RS01800 0.55 -1.0 392,074 + ABCV34_RS01800 0.55 -0.7 392,074 + ABCV34_RS01800 0.55 -0.6 392,075 - ABCV34_RS01800 0.55 +0.6 392,075 - ABCV34_RS01800 0.55 +0.7 392,075 - ABCV34_RS01800 0.55 +0.4 392,075 - ABCV34_RS01800 0.55 -1.4 392,075 - ABCV34_RS01800 0.55 -0.9 392,075 - ABCV34_RS01800 0.55 +0.1 392,075 - ABCV34_RS01800 0.55 -0.6 392,135 - ABCV34_RS01800 0.60 +1.0 392,161 + ABCV34_RS01800 0.62 -0.3 392,161 + ABCV34_RS01800 0.62 -0.6 392,161 + ABCV34_RS01800 0.62 -1.0 392,161 + ABCV34_RS01800 0.62 -1.5 392,161 + ABCV34_RS01800 0.62 +0.6 392,162 - ABCV34_RS01800 0.62 -0.2 392,162 - ABCV34_RS01800 0.62 -0.7 392,326 - ABCV34_RS01800 0.76 -0.3 392,512 + +1.0 392,512 + +0.1 392,512 + +0.0 392,544 + -0.3 392,544 + -1.0 392,544 + +0.3 392,544 + +0.4 392,544 + +1.0 392,544 + -1.3 392,545 - -0.1 392,545 - -0.6 392,545 - -2.1 392,545 - -1.9 392,546 - -0.7 392,701 + -0.7 392,701 + -1.9 392,701 + -0.3 392,701 + -0.7 392,701 + -1.1 392,701 + -0.2 392,701 + -0.1 392,701 + -0.2 392,702 - -1.8 392,702 - +0.0 392,702 - -2.0 392,702 - -1.2 392,702 - -0.4 392,760 + -1.3 392,761 - +0.3 392,761 - -0.8 392,761 - +0.3 392,761 - +0.1 393,003 + ABCV34_RS01805 0.42 -1.8 393,274 + -1.0 393,274 + -1.3 393,274 + +0.8 393,275 - -1.8 393,275 - -0.1 393,275 - -0.6 393,299 + -0.6 393,299 + -0.1 393,299 + -0.5 393,299 + -1.4 393,300 - +0.4 393,300 - +0.3 393,300 - +0.7 393,300 - -1.4 393,300 - +1.0 393,300 - -0.2 393,391 + ABCV34_RS01810 0.21 -1.3 393,391 + ABCV34_RS01810 0.21 -0.6 393,392 - ABCV34_RS01810 0.22 -0.6 393,392 - ABCV34_RS01810 0.22 -0.5 393,409 + ABCV34_RS01810 0.25 -1.2 393,409 + ABCV34_RS01810 0.25 +0.2 393,410 - ABCV34_RS01810 0.25 -1.9 393,422 - ABCV34_RS01810 0.28 -1.1 393,445 + ABCV34_RS01810 0.33 -1.7 393,446 - ABCV34_RS01810 0.33 -1.6 393,446 - ABCV34_RS01810 0.33 -0.3 393,446 - ABCV34_RS01810 0.33 -0.8 393,446 - ABCV34_RS01810 0.33 -0.8 393,446 - ABCV34_RS01810 0.33 -0.4 393,484 + ABCV34_RS01810 0.41 -0.5 393,484 + ABCV34_RS01810 0.41 +0.9 393,484 + ABCV34_RS01810 0.41 +1.4 393,485 - ABCV34_RS01810 0.41 -1.6 393,485 - ABCV34_RS01810 0.41 -0.7 393,485 - ABCV34_RS01810 0.41 -3.1 393,487 + ABCV34_RS01810 0.42 +0.1 393,488 - ABCV34_RS01810 0.42 -0.0 393,488 - ABCV34_RS01810 0.42 +0.0 393,488 - ABCV34_RS01810 0.42 -2.1 393,488 - ABCV34_RS01810 0.42 -1.6 393,488 - ABCV34_RS01810 0.42 +0.1 393,751 + +0.5 393,752 - +0.2 393,996 + ABCV34_RS01815 0.10 -2.0 393,996 + ABCV34_RS01815 0.10 +0.8 393,996 + ABCV34_RS01815 0.10 -1.2 393,996 + ABCV34_RS01815 0.10 +0.0 393,996 + ABCV34_RS01815 0.10 -3.2 393,997 - ABCV34_RS01815 0.10 -1.0 394,065 + ABCV34_RS01815 0.13 -0.0
Or see this region's nucleotide sequence