Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_939

Experiment: inner cut, R2A soft agar motility assay

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_1048 and Ac3H11_938 are separated by 67 nucleotidesAc3H11_938 and Ac3H11_939 are separated by 125 nucleotidesAc3H11_939 and Ac3H11_940 are separated by 93 nucleotides Ac3H11_1048 - tRNA-Leu-TAA, at 58,102 to 58,191 _1048 Ac3H11_938 - FIG00582348: hypothetical protein, at 58,259 to 58,843 _938 Ac3H11_939 - COG1451: Predicted metal-dependent hydrolase, at 58,969 to 59,508 _939 Ac3H11_940 - Glutamate racemase (EC 5.1.1.3), at 59,602 to 60,495 _940 Position (kb) 58 59 60Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 58.196 kb on + strandat 58.217 kb on + strandat 58.217 kb on + strandat 58.218 kb on - strandat 58.218 kb on - strandat 58.218 kb on - strandat 58.218 kb on - strandat 58.316 kb on + strandat 58.316 kb on + strandat 58.358 kb on + strand, within Ac3H11_938at 58.359 kb on - strand, within Ac3H11_938at 58.359 kb on - strand, within Ac3H11_938at 58.359 kb on - strand, within Ac3H11_938at 58.517 kb on + strand, within Ac3H11_938at 58.517 kb on + strand, within Ac3H11_938at 58.518 kb on - strand, within Ac3H11_938at 58.518 kb on - strand, within Ac3H11_938at 58.934 kb on + strandat 58.934 kb on + strandat 58.934 kb on + strandat 58.934 kb on + strandat 58.934 kb on + strandat 58.935 kb on - strandat 58.935 kb on - strandat 58.935 kb on - strandat 58.935 kb on - strandat 59.002 kb on + strandat 59.003 kb on - strandat 59.003 kb on - strandat 59.014 kb on + strandat 59.089 kb on + strand, within Ac3H11_939at 59.089 kb on + strand, within Ac3H11_939at 59.089 kb on + strand, within Ac3H11_939at 59.090 kb on - strand, within Ac3H11_939at 59.128 kb on + strand, within Ac3H11_939at 59.129 kb on - strand, within Ac3H11_939at 59.129 kb on - strand, within Ac3H11_939at 59.129 kb on - strand, within Ac3H11_939at 59.129 kb on - strand, within Ac3H11_939at 59.134 kb on + strand, within Ac3H11_939at 59.134 kb on + strand, within Ac3H11_939at 59.134 kb on + strand, within Ac3H11_939at 59.159 kb on - strand, within Ac3H11_939at 59.392 kb on + strand, within Ac3H11_939at 59.392 kb on + strand, within Ac3H11_939at 59.392 kb on + strand, within Ac3H11_939at 59.392 kb on + strand, within Ac3H11_939at 59.392 kb on + strand, within Ac3H11_939at 59.392 kb on + strand, within Ac3H11_939at 59.392 kb on + strand, within Ac3H11_939at 59.393 kb on - strand, within Ac3H11_939at 59.393 kb on - strand, within Ac3H11_939at 59.393 kb on - strand, within Ac3H11_939at 59.393 kb on - strand, within Ac3H11_939at 59.393 kb on - strand, within Ac3H11_939at 59.422 kb on + strand, within Ac3H11_939at 59.422 kb on + strand, within Ac3H11_939at 59.431 kb on + strand, within Ac3H11_939at 59.431 kb on + strand, within Ac3H11_939at 59.431 kb on + strand, within Ac3H11_939at 59.432 kb on - strand, within Ac3H11_939at 59.432 kb on - strand, within Ac3H11_939at 59.452 kb on + strand, within Ac3H11_939at 59.452 kb on + strand, within Ac3H11_939at 59.452 kb on + strand, within Ac3H11_939at 59.452 kb on + strand, within Ac3H11_939at 59.453 kb on - strand, within Ac3H11_939at 59.453 kb on - strand, within Ac3H11_939at 59.453 kb on - strand, within Ac3H11_939at 59.453 kb on - strand, within Ac3H11_939at 59.535 kb on + strandat 59.536 kb on - strandat 59.542 kb on - strandat 59.557 kb on - strandat 59.557 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction inner cut, R2A soft agar motility assay
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58,196 + -2.6
58,217 + +1.4
58,217 + +0.7
58,218 - -1.3
58,218 - -0.8
58,218 - -0.6
58,218 - +0.7
58,316 + -0.3
58,316 + +0.9
58,358 + Ac3H11_938 0.17 -1.0
58,359 - Ac3H11_938 0.17 -2.0
58,359 - Ac3H11_938 0.17 +0.9
58,359 - Ac3H11_938 0.17 -1.8
58,517 + Ac3H11_938 0.44 -1.7
58,517 + Ac3H11_938 0.44 -1.5
58,518 - Ac3H11_938 0.44 +0.9
58,518 - Ac3H11_938 0.44 -2.3
58,934 + +0.3
58,934 + -0.3
58,934 + +4.4
58,934 + -0.3
58,934 + +0.9
58,935 - +0.6
58,935 - -0.2
58,935 - -0.6
58,935 - +0.4
59,002 + -0.2
59,003 - +0.8
59,003 - +0.7
59,014 + -0.3
59,089 + Ac3H11_939 0.22 +0.6
59,089 + Ac3H11_939 0.22 +1.9
59,089 + Ac3H11_939 0.22 -0.5
59,090 - Ac3H11_939 0.22 +4.2
59,128 + Ac3H11_939 0.29 -2.6
59,129 - Ac3H11_939 0.30 +2.4
59,129 - Ac3H11_939 0.30 -2.2
59,129 - Ac3H11_939 0.30 +0.5
59,129 - Ac3H11_939 0.30 +1.9
59,134 + Ac3H11_939 0.31 -0.4
59,134 + Ac3H11_939 0.31 -1.6
59,134 + Ac3H11_939 0.31 -0.7
59,159 - Ac3H11_939 0.35 +1.0
59,392 + Ac3H11_939 0.78 -2.2
59,392 + Ac3H11_939 0.78 +2.8
59,392 + Ac3H11_939 0.78 +1.7
59,392 + Ac3H11_939 0.78 -0.3
59,392 + Ac3H11_939 0.78 +0.9
59,392 + Ac3H11_939 0.78 +1.4
59,392 + Ac3H11_939 0.78 -1.1
59,393 - Ac3H11_939 0.79 -2.2
59,393 - Ac3H11_939 0.79 -0.7
59,393 - Ac3H11_939 0.79 +0.8
59,393 - Ac3H11_939 0.79 -0.7
59,393 - Ac3H11_939 0.79 -0.7
59,422 + Ac3H11_939 0.84 -2.0
59,422 + Ac3H11_939 0.84 +0.0
59,431 + Ac3H11_939 0.86 -1.5
59,431 + Ac3H11_939 0.86 -0.3
59,431 + Ac3H11_939 0.86 -1.2
59,432 - Ac3H11_939 0.86 -0.7
59,432 - Ac3H11_939 0.86 +2.0
59,452 + Ac3H11_939 0.89 -1.9
59,452 + Ac3H11_939 0.89 -0.3
59,452 + Ac3H11_939 0.89 +0.4
59,452 + Ac3H11_939 0.89 -0.5
59,453 - Ac3H11_939 0.90 -0.8
59,453 - Ac3H11_939 0.90 +2.5
59,453 - Ac3H11_939 0.90 +1.5
59,453 - Ac3H11_939 0.90 -0.0
59,535 + -0.4
59,536 - -1.4
59,542 - -0.3
59,557 - +0.5
59,557 - -1.8

Or see this region's nucleotide sequence