Experiment: inner cut, R2A soft agar motility assay
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ac3H11_3722 and Ac3H11_3723 are separated by 243 nucleotides Ac3H11_3723 and Ac3H11_3724 are separated by 102 nucleotides
Ac3H11_3722 - Urease accessory protein UreD, at 81,839 to 82,675
_3722
Ac3H11_3723 - FAD/FMN-containing dehydrogenase, at 82,919 to 84,307
_3723
Ac3H11_3724 - Hydroxymethylpyrimidine ABC transporter, transmembrane component, at 84,410 to 85,330
_3724
Position (kb) 82
83
84
85 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 82.335 kb on + strand, within Ac3H11_3722 at 82.428 kb on + strand, within Ac3H11_3722 at 82.570 kb on - strand, within Ac3H11_3722 at 82.630 kb on + strand at 82.630 kb on + strand at 82.630 kb on + strand at 82.630 kb on + strand at 82.631 kb on - strand at 82.631 kb on - strand at 82.631 kb on - strand at 82.645 kb on - strand at 82.695 kb on + strand at 82.971 kb on + strand at 82.972 kb on - strand at 83.079 kb on + strand, within Ac3H11_3723 at 83.079 kb on + strand, within Ac3H11_3723 at 83.079 kb on + strand, within Ac3H11_3723 at 83.079 kb on + strand, within Ac3H11_3723 at 83.079 kb on + strand, within Ac3H11_3723 at 83.080 kb on - strand, within Ac3H11_3723 at 83.080 kb on - strand, within Ac3H11_3723 at 83.080 kb on - strand, within Ac3H11_3723 at 83.080 kb on - strand, within Ac3H11_3723 at 83.119 kb on - strand, within Ac3H11_3723 at 83.119 kb on - strand, within Ac3H11_3723 at 83.304 kb on + strand, within Ac3H11_3723 at 83.304 kb on + strand, within Ac3H11_3723 at 83.304 kb on + strand, within Ac3H11_3723 at 83.305 kb on - strand, within Ac3H11_3723 at 83.305 kb on - strand, within Ac3H11_3723 at 83.305 kb on - strand, within Ac3H11_3723 at 83.305 kb on - strand, within Ac3H11_3723 at 83.305 kb on - strand, within Ac3H11_3723 at 83.305 kb on - strand, within Ac3H11_3723 at 83.359 kb on - strand, within Ac3H11_3723 at 83.359 kb on - strand, within Ac3H11_3723 at 83.410 kb on - strand, within Ac3H11_3723 at 83.529 kb on + strand, within Ac3H11_3723 at 83.529 kb on + strand, within Ac3H11_3723 at 83.530 kb on - strand, within Ac3H11_3723 at 83.709 kb on + strand, within Ac3H11_3723 at 84.057 kb on + strand, within Ac3H11_3723 at 84.057 kb on + strand, within Ac3H11_3723 at 84.058 kb on - strand, within Ac3H11_3723 at 84.058 kb on - strand, within Ac3H11_3723 at 84.058 kb on - strand, within Ac3H11_3723 at 84.312 kb on + strand at 84.313 kb on - strand at 84.453 kb on - strand at 84.453 kb on - strand at 84.669 kb on + strand, within Ac3H11_3724 at 84.669 kb on + strand, within Ac3H11_3724 at 84.670 kb on - strand, within Ac3H11_3724 at 84.738 kb on + strand, within Ac3H11_3724 at 84.738 kb on + strand, within Ac3H11_3724 at 85.092 kb on + strand, within Ac3H11_3724 at 85.178 kb on + strand, within Ac3H11_3724
Per-strain Table
Position Strand Gene LocusTag Fraction inner cut, R2A soft agar motility assay remove 82,335 + Ac3H11_3722 0.59 +2.7 82,428 + Ac3H11_3722 0.70 -0.9 82,570 - Ac3H11_3722 0.87 +1.0 82,630 + -2.5 82,630 + +0.8 82,630 + +0.7 82,630 + +1.7 82,631 - -0.0 82,631 - -2.0 82,631 - -0.2 82,645 - -0.2 82,695 + +0.2 82,971 + -0.2 82,972 - -1.6 83,079 + Ac3H11_3723 0.12 +0.2 83,079 + Ac3H11_3723 0.12 +1.2 83,079 + Ac3H11_3723 0.12 -2.4 83,079 + Ac3H11_3723 0.12 -1.8 83,079 + Ac3H11_3723 0.12 +1.3 83,080 - Ac3H11_3723 0.12 -1.2 83,080 - Ac3H11_3723 0.12 +1.1 83,080 - Ac3H11_3723 0.12 +0.1 83,080 - Ac3H11_3723 0.12 +0.3 83,119 - Ac3H11_3723 0.14 +0.4 83,119 - Ac3H11_3723 0.14 -0.9 83,304 + Ac3H11_3723 0.28 -0.2 83,304 + Ac3H11_3723 0.28 -2.7 83,304 + Ac3H11_3723 0.28 -2.2 83,305 - Ac3H11_3723 0.28 +0.7 83,305 - Ac3H11_3723 0.28 +0.4 83,305 - Ac3H11_3723 0.28 +1.1 83,305 - Ac3H11_3723 0.28 -2.6 83,305 - Ac3H11_3723 0.28 +1.2 83,305 - Ac3H11_3723 0.28 +1.5 83,359 - Ac3H11_3723 0.32 +0.0 83,359 - Ac3H11_3723 0.32 +1.7 83,410 - Ac3H11_3723 0.35 +3.4 83,529 + Ac3H11_3723 0.44 +0.6 83,529 + Ac3H11_3723 0.44 -0.5 83,530 - Ac3H11_3723 0.44 +0.5 83,709 + Ac3H11_3723 0.57 +1.2 84,057 + Ac3H11_3723 0.82 -0.5 84,057 + Ac3H11_3723 0.82 +0.4 84,058 - Ac3H11_3723 0.82 -1.7 84,058 - Ac3H11_3723 0.82 -0.7 84,058 - Ac3H11_3723 0.82 -1.1 84,312 + +0.1 84,313 - -0.6 84,453 - -0.1 84,453 - +0.4 84,669 + Ac3H11_3724 0.28 +0.5 84,669 + Ac3H11_3724 0.28 -1.7 84,670 - Ac3H11_3724 0.28 -1.1 84,738 + Ac3H11_3724 0.36 -0.7 84,738 + Ac3H11_3724 0.36 +1.0 85,092 + Ac3H11_3724 0.74 +0.5 85,178 + Ac3H11_3724 0.83 -1.8
Or see this region's nucleotide sequence