Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_3700

Experiment: inner cut, R2A soft agar motility assay

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_3698 and Ac3H11_3699 are separated by 9 nucleotidesAc3H11_3699 and Ac3H11_3700 are separated by 20 nucleotidesAc3H11_3700 and Ac3H11_3701 are separated by 32 nucleotidesAc3H11_3701 and Ac3H11_3702 are separated by 213 nucleotides Ac3H11_3698 - diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s), at 56,431 to 57,483 _3698 Ac3H11_3699 - Isoquinoline 1-oxidoreductase alpha subunit (EC 1.3.99.16), at 57,493 to 57,957 _3699 Ac3H11_3700 - Isoquinoline 1-oxidoreductase beta subunit (EC 1.3.99.16), at 57,978 to 60,230 _3700 Ac3H11_3701 - hypothetical protein, at 60,263 to 60,382 _3701 Ac3H11_3702 - Urea ABC transporter, urea binding protein, at 60,596 to 61,858 _3702 Position (kb) 57 58 59 60 61Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 56.986 kb on + strand, within Ac3H11_3698at 56.986 kb on + strand, within Ac3H11_3698at 56.987 kb on - strand, within Ac3H11_3698at 56.987 kb on - strand, within Ac3H11_3698at 57.409 kb on + strandat 57.409 kb on + strandat 57.410 kb on - strandat 57.410 kb on - strandat 57.410 kb on - strandat 57.481 kb on + strandat 57.481 kb on + strandat 57.548 kb on + strand, within Ac3H11_3699at 57.549 kb on - strand, within Ac3H11_3699at 58.843 kb on + strand, within Ac3H11_3700at 58.843 kb on + strand, within Ac3H11_3700at 58.936 kb on + strand, within Ac3H11_3700at 58.936 kb on + strand, within Ac3H11_3700at 58.937 kb on - strand, within Ac3H11_3700at 58.937 kb on - strand, within Ac3H11_3700at 58.937 kb on - strand, within Ac3H11_3700at 58.937 kb on - strand, within Ac3H11_3700at 59.381 kb on - strand, within Ac3H11_3700at 59.947 kb on + strand, within Ac3H11_3700at 59.947 kb on + strand, within Ac3H11_3700at 59.947 kb on + strand, within Ac3H11_3700at 59.948 kb on - strand, within Ac3H11_3700at 59.948 kb on - strand, within Ac3H11_3700at 59.948 kb on - strand, within Ac3H11_3700at 59.948 kb on - strand, within Ac3H11_3700at 59.948 kb on - strand, within Ac3H11_3700at 60.374 kb on - strandat 60.383 kb on + strandat 60.383 kb on + strandat 60.383 kb on + strandat 60.383 kb on + strandat 60.398 kb on + strandat 60.480 kb on - strandat 60.524 kb on + strandat 60.524 kb on + strandat 60.524 kb on + strandat 60.525 kb on - strandat 60.576 kb on + strandat 60.576 kb on + strandat 60.576 kb on + strandat 60.577 kb on - strandat 60.577 kb on - strandat 60.577 kb on - strandat 60.608 kb on + strandat 60.609 kb on - strandat 60.984 kb on - strand, within Ac3H11_3702at 61.017 kb on - strand, within Ac3H11_3702at 61.017 kb on - strand, within Ac3H11_3702at 61.017 kb on - strand, within Ac3H11_3702at 61.017 kb on - strand, within Ac3H11_3702at 61.017 kb on - strand, within Ac3H11_3702at 61.062 kb on - strand, within Ac3H11_3702at 61.118 kb on + strand, within Ac3H11_3702at 61.118 kb on + strand, within Ac3H11_3702at 61.119 kb on - strand, within Ac3H11_3702at 61.119 kb on - strand, within Ac3H11_3702at 61.119 kb on - strand, within Ac3H11_3702at 61.119 kb on - strand, within Ac3H11_3702at 61.157 kb on + strand, within Ac3H11_3702at 61.157 kb on + strand, within Ac3H11_3702at 61.202 kb on + strand, within Ac3H11_3702at 61.202 kb on + strand, within Ac3H11_3702at 61.203 kb on - strand, within Ac3H11_3702at 61.203 kb on - strand, within Ac3H11_3702at 61.227 kb on - strand, within Ac3H11_3702

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Per-strain Table

Position Strand Gene LocusTag Fraction inner cut, R2A soft agar motility assay
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56,986 + Ac3H11_3698 0.53 +0.1
56,986 + Ac3H11_3698 0.53 +0.8
56,987 - Ac3H11_3698 0.53 +1.9
56,987 - Ac3H11_3698 0.53 -0.3
57,409 + -0.1
57,409 + -1.1
57,410 - +0.5
57,410 - -0.7
57,410 - -0.7
57,481 + -1.0
57,481 + -1.4
57,548 + Ac3H11_3699 0.12 -1.0
57,549 - Ac3H11_3699 0.12 -3.4
58,843 + Ac3H11_3700 0.38 +0.4
58,843 + Ac3H11_3700 0.38 +1.9
58,936 + Ac3H11_3700 0.43 -0.8
58,936 + Ac3H11_3700 0.43 -0.1
58,937 - Ac3H11_3700 0.43 -0.1
58,937 - Ac3H11_3700 0.43 +0.3
58,937 - Ac3H11_3700 0.43 +0.4
58,937 - Ac3H11_3700 0.43 +0.1
59,381 - Ac3H11_3700 0.62 +1.6
59,947 + Ac3H11_3700 0.87 +3.1
59,947 + Ac3H11_3700 0.87 +0.5
59,947 + Ac3H11_3700 0.87 -0.6
59,948 - Ac3H11_3700 0.87 -1.2
59,948 - Ac3H11_3700 0.87 -0.1
59,948 - Ac3H11_3700 0.87 -0.1
59,948 - Ac3H11_3700 0.87 -0.2
59,948 - Ac3H11_3700 0.87 -3.1
60,374 - -1.3
60,383 + -0.8
60,383 + -1.8
60,383 + +1.7
60,383 + +0.9
60,398 + -2.8
60,480 - +0.3
60,524 + -0.5
60,524 + -0.5
60,524 + -1.0
60,525 - -0.2
60,576 + +0.2
60,576 + +0.6
60,576 + -1.5
60,577 - +1.2
60,577 - -1.1
60,577 - -1.5
60,608 + -1.2
60,609 - +2.6
60,984 - Ac3H11_3702 0.31 -1.0
61,017 - Ac3H11_3702 0.33 -0.7
61,017 - Ac3H11_3702 0.33 +0.6
61,017 - Ac3H11_3702 0.33 -0.7
61,017 - Ac3H11_3702 0.33 +0.2
61,017 - Ac3H11_3702 0.33 +0.8
61,062 - Ac3H11_3702 0.37 +1.7
61,118 + Ac3H11_3702 0.41 -0.8
61,118 + Ac3H11_3702 0.41 -3.0
61,119 - Ac3H11_3702 0.41 -0.3
61,119 - Ac3H11_3702 0.41 -2.3
61,119 - Ac3H11_3702 0.41 +0.6
61,119 - Ac3H11_3702 0.41 +1.6
61,157 + Ac3H11_3702 0.44 +0.3
61,157 + Ac3H11_3702 0.44 -1.4
61,202 + Ac3H11_3702 0.48 -0.8
61,202 + Ac3H11_3702 0.48 -2.4
61,203 - Ac3H11_3702 0.48 -0.7
61,203 - Ac3H11_3702 0.48 +0.4
61,227 - Ac3H11_3702 0.50 +1.7

Or see this region's nucleotide sequence