Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_3528

Experiment: inner cut, R2A soft agar motility assay

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_3527 and Ac3H11_3528 are separated by 541 nucleotidesAc3H11_3528 and Ac3H11_3529 are separated by 115 nucleotides Ac3H11_3527 - hypothetical protein, at 72,440 to 72,925 _3527 Ac3H11_3528 - 6,7-dimethyl-8-ribityllumazine synthase (EC 2.5.1.78), at 73,467 to 74,030 _3528 Ac3H11_3529 - Methyl-accepting chemotaxis protein I (serine chemoreceptor protein), at 74,146 to 75,741 _3529 Position (kb) 73 74 75Strain fitness (log2 ratio) -2 -1 0 1at 73.109 kb on - strandat 73.109 kb on - strandat 73.187 kb on - strandat 73.372 kb on - strandat 73.488 kb on - strandat 73.488 kb on - strandat 73.488 kb on - strandat 73.755 kb on + strand, within Ac3H11_3528at 73.755 kb on + strand, within Ac3H11_3528at 73.756 kb on - strand, within Ac3H11_3528at 73.756 kb on - strand, within Ac3H11_3528at 73.950 kb on + strand, within Ac3H11_3528at 73.951 kb on - strand, within Ac3H11_3528at 73.951 kb on - strand, within Ac3H11_3528at 73.951 kb on - strand, within Ac3H11_3528at 73.951 kb on - strand, within Ac3H11_3528at 74.092 kb on + strandat 74.135 kb on + strandat 74.136 kb on - strandat 74.136 kb on - strandat 74.137 kb on + strandat 74.137 kb on + strandat 74.177 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction inner cut, R2A soft agar motility assay
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73,109 - -0.6
73,109 - +1.0
73,187 - -2.3
73,372 - +0.5
73,488 - -0.6
73,488 - +0.5
73,488 - -0.8
73,755 + Ac3H11_3528 0.51 -0.4
73,755 + Ac3H11_3528 0.51 +0.9
73,756 - Ac3H11_3528 0.51 -1.0
73,756 - Ac3H11_3528 0.51 +1.0
73,950 + Ac3H11_3528 0.86 -0.9
73,951 - Ac3H11_3528 0.86 +1.0
73,951 - Ac3H11_3528 0.86 -1.2
73,951 - Ac3H11_3528 0.86 -1.5
73,951 - Ac3H11_3528 0.86 +1.1
74,092 + +0.5
74,135 + +0.3
74,136 - -1.5
74,136 - -2.1
74,137 + +0.5
74,137 + +1.4
74,177 - -0.2

Or see this region's nucleotide sequence