Experiment: inner cut, R2A soft agar motility assay
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ac3H11_3360 and Ac3H11_3361 are separated by 16 nucleotides Ac3H11_3361 and Ac3H11_3362 are separated by 27 nucleotides
Ac3H11_3360 - Response regulator receiver:Transcriptional regulatory protein, C terminal, at 43,446 to 44,168
_3360
Ac3H11_3361 - Copper sensory histidine kinase CpxA, at 44,185 to 45,468
_3361
Ac3H11_3362 - Transporter, MFS superfamily, at 45,496 to 46,788
_3362
Position (kb) 44
45
46 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 43.187 kb on - strand at 43.187 kb on - strand at 43.187 kb on - strand at 43.298 kb on + strand at 43.299 kb on - strand at 43.300 kb on + strand at 43.347 kb on + strand at 43.418 kb on + strand at 43.418 kb on + strand at 43.418 kb on + strand at 43.418 kb on + strand at 43.418 kb on + strand at 43.418 kb on + strand at 43.419 kb on - strand at 43.434 kb on + strand at 43.434 kb on + strand at 43.434 kb on + strand at 43.434 kb on + strand at 43.434 kb on + strand at 43.435 kb on - strand at 43.435 kb on - strand at 43.435 kb on - strand at 43.435 kb on - strand at 43.435 kb on - strand at 43.435 kb on - strand at 43.435 kb on - strand at 43.506 kb on + strand at 43.507 kb on - strand at 43.507 kb on - strand at 43.764 kb on + strand, within Ac3H11_3360 at 43.765 kb on - strand, within Ac3H11_3360 at 43.944 kb on + strand, within Ac3H11_3360 at 43.944 kb on + strand, within Ac3H11_3360 at 44.142 kb on + strand at 44.142 kb on + strand at 44.142 kb on + strand at 44.143 kb on - strand at 44.143 kb on - strand at 44.143 kb on - strand at 44.219 kb on - strand at 44.624 kb on - strand, within Ac3H11_3361 at 44.644 kb on - strand, within Ac3H11_3361 at 44.990 kb on - strand, within Ac3H11_3361 at 45.158 kb on - strand, within Ac3H11_3361 at 45.278 kb on - strand, within Ac3H11_3361 at 45.539 kb on + strand at 45.539 kb on + strand at 45.539 kb on + strand at 45.539 kb on + strand at 45.539 kb on + strand at 45.539 kb on + strand at 45.540 kb on - strand at 45.540 kb on - strand at 45.540 kb on - strand at 45.587 kb on + strand at 45.740 kb on + strand, within Ac3H11_3362 at 45.740 kb on + strand, within Ac3H11_3362 at 45.740 kb on + strand, within Ac3H11_3362 at 45.740 kb on + strand, within Ac3H11_3362 at 45.741 kb on - strand, within Ac3H11_3362 at 45.741 kb on - strand, within Ac3H11_3362 at 45.741 kb on - strand, within Ac3H11_3362 at 45.741 kb on - strand, within Ac3H11_3362 at 45.741 kb on - strand, within Ac3H11_3362 at 45.741 kb on - strand, within Ac3H11_3362 at 45.741 kb on - strand, within Ac3H11_3362 at 45.741 kb on - strand, within Ac3H11_3362 at 45.741 kb on - strand, within Ac3H11_3362 at 45.741 kb on - strand, within Ac3H11_3362 at 45.741 kb on - strand, within Ac3H11_3362 at 45.741 kb on - strand, within Ac3H11_3362 at 45.741 kb on - strand, within Ac3H11_3362 at 45.849 kb on - strand, within Ac3H11_3362 at 46.019 kb on + strand, within Ac3H11_3362 at 46.019 kb on + strand, within Ac3H11_3362 at 46.019 kb on + strand, within Ac3H11_3362 at 46.020 kb on - strand, within Ac3H11_3362 at 46.020 kb on - strand, within Ac3H11_3362 at 46.020 kb on - strand, within Ac3H11_3362 at 46.040 kb on + strand, within Ac3H11_3362
Per-strain Table
Position Strand Gene LocusTag Fraction inner cut, R2A soft agar motility assay remove 43,187 - -2.2 43,187 - +4.0 43,187 - -1.2 43,298 + +0.2 43,299 - +1.4 43,300 + -0.8 43,347 + -2.0 43,418 + +0.2 43,418 + +0.3 43,418 + -0.1 43,418 + -0.2 43,418 + +1.4 43,418 + -0.3 43,419 - +0.6 43,434 + +0.9 43,434 + +0.1 43,434 + +2.8 43,434 + -0.1 43,434 + -1.2 43,435 - -1.1 43,435 - -0.7 43,435 - +2.1 43,435 - -0.8 43,435 - -0.4 43,435 - -0.9 43,435 - -1.3 43,506 + +0.8 43,507 - -0.7 43,507 - -1.7 43,764 + Ac3H11_3360 0.44 +1.0 43,765 - Ac3H11_3360 0.44 -1.2 43,944 + Ac3H11_3360 0.69 -2.1 43,944 + Ac3H11_3360 0.69 -1.3 44,142 + -0.1 44,142 + +0.4 44,142 + +0.0 44,143 - +0.3 44,143 - -1.6 44,143 - -1.0 44,219 - -0.9 44,624 - Ac3H11_3361 0.34 +1.1 44,644 - Ac3H11_3361 0.36 -1.9 44,990 - Ac3H11_3361 0.63 -1.2 45,158 - Ac3H11_3361 0.76 -0.5 45,278 - Ac3H11_3361 0.85 -1.2 45,539 + -1.6 45,539 + +1.6 45,539 + -1.2 45,539 + +0.3 45,539 + +1.4 45,539 + -0.5 45,540 - -0.8 45,540 - -0.6 45,540 - +4.1 45,587 + +1.4 45,740 + Ac3H11_3362 0.19 -0.5 45,740 + Ac3H11_3362 0.19 -0.8 45,740 + Ac3H11_3362 0.19 +0.9 45,740 + Ac3H11_3362 0.19 +0.6 45,741 - Ac3H11_3362 0.19 +0.9 45,741 - Ac3H11_3362 0.19 -1.6 45,741 - Ac3H11_3362 0.19 -2.3 45,741 - Ac3H11_3362 0.19 +1.5 45,741 - Ac3H11_3362 0.19 -0.2 45,741 - Ac3H11_3362 0.19 -1.1 45,741 - Ac3H11_3362 0.19 +0.9 45,741 - Ac3H11_3362 0.19 +0.4 45,741 - Ac3H11_3362 0.19 +0.6 45,741 - Ac3H11_3362 0.19 -1.4 45,741 - Ac3H11_3362 0.19 -0.7 45,741 - Ac3H11_3362 0.19 +1.5 45,741 - Ac3H11_3362 0.19 -1.8 45,849 - Ac3H11_3362 0.27 -0.4 46,019 + Ac3H11_3362 0.40 -0.1 46,019 + Ac3H11_3362 0.40 +0.2 46,019 + Ac3H11_3362 0.40 -2.9 46,020 - Ac3H11_3362 0.41 +0.7 46,020 - Ac3H11_3362 0.41 -0.6 46,020 - Ac3H11_3362 0.41 -0.9 46,040 + Ac3H11_3362 0.42 -1.3
Or see this region's nucleotide sequence