Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_2555

Experiment: inner cut, R2A soft agar motility assay

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_2553 and Ac3H11_2554 overlap by 4 nucleotidesAc3H11_2554 and Ac3H11_2555 are separated by 34 nucleotidesAc3H11_2555 and Ac3H11_2556 are separated by 31 nucleotidesAc3H11_2556 and Ac3H11_2557 are separated by 76 nucleotides Ac3H11_2553 - Cell division transporter, ATP-binding protein FtsE (TC 3.A.5.1.1), at 830,855 to 831,652 _2553 Ac3H11_2554 - ABC transporter for L-Histidine, permease component 1 (from data), at 831,649 to 832,317 _2554 Ac3H11_2555 - ABC transporter for L-Histidine, periplasmic substrate-binding component 1 (from data), at 832,352 to 833,101 _2555 Ac3H11_2556 - Transcriptional regulator, IclR family, at 833,133 to 833,909 _2556 Ac3H11_2557 - Urocanate hydratase (EC 4.2.1.49) (from data), at 833,986 to 835,710 _2557 Position (kb) 832 833 834Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 831.728 kb on + strand, within Ac3H11_2554at 831.728 kb on + strand, within Ac3H11_2554at 831.728 kb on + strand, within Ac3H11_2554at 831.729 kb on - strand, within Ac3H11_2554at 831.749 kb on + strand, within Ac3H11_2554at 831.749 kb on + strand, within Ac3H11_2554at 831.749 kb on + strand, within Ac3H11_2554at 831.749 kb on + strand, within Ac3H11_2554at 831.749 kb on + strand, within Ac3H11_2554at 832.010 kb on + strand, within Ac3H11_2554at 832.010 kb on + strand, within Ac3H11_2554at 832.010 kb on + strand, within Ac3H11_2554at 832.010 kb on + strand, within Ac3H11_2554at 832.010 kb on + strand, within Ac3H11_2554at 832.011 kb on - strand, within Ac3H11_2554at 832.011 kb on - strand, within Ac3H11_2554at 832.011 kb on - strand, within Ac3H11_2554at 832.011 kb on - strand, within Ac3H11_2554at 832.011 kb on - strand, within Ac3H11_2554at 832.022 kb on + strand, within Ac3H11_2554at 832.142 kb on + strand, within Ac3H11_2554at 832.325 kb on + strandat 832.325 kb on + strandat 832.326 kb on - strandat 832.353 kb on + strandat 832.353 kb on + strandat 832.353 kb on + strandat 832.354 kb on - strandat 832.398 kb on + strandat 832.398 kb on + strandat 832.398 kb on + strandat 832.398 kb on + strandat 832.399 kb on - strandat 832.482 kb on + strand, within Ac3H11_2555at 832.482 kb on + strand, within Ac3H11_2555at 832.482 kb on + strand, within Ac3H11_2555at 832.483 kb on - strand, within Ac3H11_2555at 832.539 kb on + strand, within Ac3H11_2555at 832.540 kb on - strand, within Ac3H11_2555at 832.540 kb on - strand, within Ac3H11_2555at 832.540 kb on - strand, within Ac3H11_2555at 832.663 kb on - strand, within Ac3H11_2555at 832.663 kb on - strand, within Ac3H11_2555at 832.663 kb on - strand, within Ac3H11_2555at 832.776 kb on + strand, within Ac3H11_2555at 832.776 kb on + strand, within Ac3H11_2555at 832.776 kb on + strand, within Ac3H11_2555at 832.777 kb on - strand, within Ac3H11_2555at 832.821 kb on + strand, within Ac3H11_2555at 832.821 kb on + strand, within Ac3H11_2555at 832.821 kb on + strand, within Ac3H11_2555at 832.821 kb on + strand, within Ac3H11_2555at 832.821 kb on + strand, within Ac3H11_2555at 832.821 kb on + strand, within Ac3H11_2555at 832.821 kb on + strand, within Ac3H11_2555at 832.822 kb on - strand, within Ac3H11_2555at 832.822 kb on - strand, within Ac3H11_2555at 832.822 kb on - strand, within Ac3H11_2555at 832.822 kb on - strand, within Ac3H11_2555at 832.822 kb on - strand, within Ac3H11_2555at 832.822 kb on - strand, within Ac3H11_2555at 832.822 kb on - strand, within Ac3H11_2555at 832.822 kb on - strand, within Ac3H11_2555at 832.822 kb on - strand, within Ac3H11_2555at 833.392 kb on + strand, within Ac3H11_2556at 833.392 kb on + strand, within Ac3H11_2556at 833.392 kb on + strand, within Ac3H11_2556at 833.392 kb on + strand, within Ac3H11_2556at 833.743 kb on + strand, within Ac3H11_2556at 833.889 kb on - strandat 833.897 kb on - strandat 833.897 kb on - strandat 833.897 kb on - strandat 833.914 kb on - strandat 833.965 kb on + strandat 833.987 kb on + strandat 833.987 kb on + strandat 833.988 kb on - strandat 833.988 kb on - strandat 833.988 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction inner cut, R2A soft agar motility assay
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831,728 + Ac3H11_2554 0.12 -0.2
831,728 + Ac3H11_2554 0.12 -1.4
831,728 + Ac3H11_2554 0.12 +1.9
831,729 - Ac3H11_2554 0.12 -1.1
831,749 + Ac3H11_2554 0.15 -0.0
831,749 + Ac3H11_2554 0.15 +0.4
831,749 + Ac3H11_2554 0.15 -0.6
831,749 + Ac3H11_2554 0.15 +0.5
831,749 + Ac3H11_2554 0.15 +1.4
832,010 + Ac3H11_2554 0.54 +0.6
832,010 + Ac3H11_2554 0.54 +1.6
832,010 + Ac3H11_2554 0.54 -1.1
832,010 + Ac3H11_2554 0.54 -1.9
832,010 + Ac3H11_2554 0.54 +1.3
832,011 - Ac3H11_2554 0.54 -0.5
832,011 - Ac3H11_2554 0.54 +1.4
832,011 - Ac3H11_2554 0.54 +1.7
832,011 - Ac3H11_2554 0.54 -0.5
832,011 - Ac3H11_2554 0.54 -3.0
832,022 + Ac3H11_2554 0.56 +1.1
832,142 + Ac3H11_2554 0.74 +4.0
832,325 + -0.8
832,325 + +0.7
832,326 - -0.4
832,353 + +0.3
832,353 + -1.1
832,353 + +1.0
832,354 - -1.7
832,398 + +0.7
832,398 + +2.1
832,398 + -0.5
832,398 + +0.9
832,399 - -0.2
832,482 + Ac3H11_2555 0.17 +0.9
832,482 + Ac3H11_2555 0.17 +1.0
832,482 + Ac3H11_2555 0.17 -1.0
832,483 - Ac3H11_2555 0.17 -0.6
832,539 + Ac3H11_2555 0.25 +0.8
832,540 - Ac3H11_2555 0.25 -0.5
832,540 - Ac3H11_2555 0.25 -1.0
832,540 - Ac3H11_2555 0.25 -2.2
832,663 - Ac3H11_2555 0.41 +0.2
832,663 - Ac3H11_2555 0.41 -1.5
832,663 - Ac3H11_2555 0.41 +1.4
832,776 + Ac3H11_2555 0.57 -0.8
832,776 + Ac3H11_2555 0.57 +0.2
832,776 + Ac3H11_2555 0.57 -0.2
832,777 - Ac3H11_2555 0.57 -0.4
832,821 + Ac3H11_2555 0.63 +1.1
832,821 + Ac3H11_2555 0.63 -1.3
832,821 + Ac3H11_2555 0.63 -0.8
832,821 + Ac3H11_2555 0.63 -1.2
832,821 + Ac3H11_2555 0.63 -0.5
832,821 + Ac3H11_2555 0.63 -0.3
832,821 + Ac3H11_2555 0.63 -0.3
832,822 - Ac3H11_2555 0.63 -0.8
832,822 - Ac3H11_2555 0.63 +0.7
832,822 - Ac3H11_2555 0.63 +0.1
832,822 - Ac3H11_2555 0.63 -1.8
832,822 - Ac3H11_2555 0.63 +0.7
832,822 - Ac3H11_2555 0.63 -0.0
832,822 - Ac3H11_2555 0.63 +0.9
832,822 - Ac3H11_2555 0.63 -1.0
832,822 - Ac3H11_2555 0.63 -1.2
833,392 + Ac3H11_2556 0.33 +0.6
833,392 + Ac3H11_2556 0.33 +0.3
833,392 + Ac3H11_2556 0.33 +0.5
833,392 + Ac3H11_2556 0.33 -1.9
833,743 + Ac3H11_2556 0.79 +1.3
833,889 - +2.5
833,897 - -2.2
833,897 - -2.6
833,897 - +0.3
833,914 - +0.6
833,965 + -0.3
833,987 + +0.2
833,987 + +0.0
833,988 - -1.7
833,988 - -0.1
833,988 - -0.7

Or see this region's nucleotide sequence