Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_1612

Experiment: inner cut, R2A soft agar motility assay

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAc3H11_1610 and Ac3H11_1611 overlap by 4 nucleotidesAc3H11_1611 and Ac3H11_1612 are separated by 5 nucleotidesAc3H11_1612 and Ac3H11_1613 overlap by 4 nucleotidesAc3H11_1613 and Ac3H11_1614 overlap by 4 nucleotides Ac3H11_1610 - Putrescine transport ATP-binding protein PotA (TC 3.A.1.11.1), at 193,708 to 194,796 _1610 Ac3H11_1611 - ABC transporter, permease protein, at 194,793 to 195,692 _1611 Ac3H11_1612 - ABC transporter, permease protein, at 195,698 to 196,492 _1612 Ac3H11_1613 - Opine oxidase subunit C, at 196,489 to 196,833 _1613 Ac3H11_1614 - Opine oxidase subunit A, at 196,830 to 198,236 _1614 Position (kb) 195 196 197Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 194.899 kb on + strand, within Ac3H11_1611at 194.997 kb on + strand, within Ac3H11_1611at 195.021 kb on + strand, within Ac3H11_1611at 195.021 kb on + strand, within Ac3H11_1611at 195.021 kb on + strand, within Ac3H11_1611at 195.022 kb on - strand, within Ac3H11_1611at 195.022 kb on - strand, within Ac3H11_1611at 195.024 kb on + strand, within Ac3H11_1611at 195.025 kb on - strand, within Ac3H11_1611at 195.025 kb on - strand, within Ac3H11_1611at 195.025 kb on - strand, within Ac3H11_1611at 195.105 kb on + strand, within Ac3H11_1611at 195.105 kb on + strand, within Ac3H11_1611at 195.106 kb on - strand, within Ac3H11_1611at 195.106 kb on - strand, within Ac3H11_1611at 195.106 kb on - strand, within Ac3H11_1611at 195.106 kb on - strand, within Ac3H11_1611at 195.106 kb on - strand, within Ac3H11_1611at 195.279 kb on + strand, within Ac3H11_1611at 195.279 kb on + strand, within Ac3H11_1611at 195.280 kb on - strand, within Ac3H11_1611at 195.558 kb on + strand, within Ac3H11_1611at 195.558 kb on + strand, within Ac3H11_1611at 195.568 kb on - strand, within Ac3H11_1611at 195.648 kb on + strandat 195.648 kb on + strandat 195.648 kb on + strandat 195.648 kb on + strandat 195.649 kb on - strandat 196.005 kb on + strand, within Ac3H11_1612at 196.128 kb on - strand, within Ac3H11_1612at 196.358 kb on + strand, within Ac3H11_1612at 196.358 kb on + strand, within Ac3H11_1612at 196.358 kb on + strand, within Ac3H11_1612at 196.358 kb on + strand, within Ac3H11_1612at 196.358 kb on + strand, within Ac3H11_1612at 196.358 kb on + strand, within Ac3H11_1612at 196.358 kb on + strand, within Ac3H11_1612at 196.358 kb on + strand, within Ac3H11_1612at 196.359 kb on - strand, within Ac3H11_1612at 196.359 kb on - strand, within Ac3H11_1612at 196.359 kb on - strand, within Ac3H11_1612at 196.364 kb on + strand, within Ac3H11_1612at 196.364 kb on + strand, within Ac3H11_1612at 196.365 kb on - strand, within Ac3H11_1612at 196.365 kb on - strand, within Ac3H11_1612at 196.365 kb on - strand, within Ac3H11_1612at 196.365 kb on - strand, within Ac3H11_1612at 196.365 kb on - strand, within Ac3H11_1612at 196.458 kb on - strandat 196.966 kb on - strandat 197.010 kb on + strand, within Ac3H11_1614at 197.166 kb on + strand, within Ac3H11_1614at 197.166 kb on + strand, within Ac3H11_1614at 197.166 kb on + strand, within Ac3H11_1614at 197.167 kb on - strand, within Ac3H11_1614at 197.242 kb on - strand, within Ac3H11_1614at 197.242 kb on - strand, within Ac3H11_1614at 197.331 kb on + strand, within Ac3H11_1614at 197.331 kb on + strand, within Ac3H11_1614at 197.332 kb on - strand, within Ac3H11_1614at 197.332 kb on - strand, within Ac3H11_1614at 197.344 kb on - strand, within Ac3H11_1614at 197.349 kb on + strand, within Ac3H11_1614at 197.463 kb on + strand, within Ac3H11_1614at 197.463 kb on + strand, within Ac3H11_1614at 197.463 kb on + strand, within Ac3H11_1614at 197.464 kb on - strand, within Ac3H11_1614at 197.464 kb on - strand, within Ac3H11_1614at 197.464 kb on - strand, within Ac3H11_1614at 197.464 kb on - strand, within Ac3H11_1614at 197.464 kb on - strand, within Ac3H11_1614at 197.466 kb on + strand, within Ac3H11_1614at 197.467 kb on - strand, within Ac3H11_1614

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction inner cut, R2A soft agar motility assay
remove
194,899 + Ac3H11_1611 0.12 +0.2
194,997 + Ac3H11_1611 0.23 -2.4
195,021 + Ac3H11_1611 0.25 +3.0
195,021 + Ac3H11_1611 0.25 +0.8
195,021 + Ac3H11_1611 0.25 -1.5
195,022 - Ac3H11_1611 0.25 -1.2
195,022 - Ac3H11_1611 0.25 -0.0
195,024 + Ac3H11_1611 0.26 -1.9
195,025 - Ac3H11_1611 0.26 -1.0
195,025 - Ac3H11_1611 0.26 -0.8
195,025 - Ac3H11_1611 0.26 +0.9
195,105 + Ac3H11_1611 0.35 -2.6
195,105 + Ac3H11_1611 0.35 +1.4
195,106 - Ac3H11_1611 0.35 +2.0
195,106 - Ac3H11_1611 0.35 +0.6
195,106 - Ac3H11_1611 0.35 -0.6
195,106 - Ac3H11_1611 0.35 -0.4
195,106 - Ac3H11_1611 0.35 +1.6
195,279 + Ac3H11_1611 0.54 +1.5
195,279 + Ac3H11_1611 0.54 -1.4
195,280 - Ac3H11_1611 0.54 -0.1
195,558 + Ac3H11_1611 0.85 +1.8
195,558 + Ac3H11_1611 0.85 +0.6
195,568 - Ac3H11_1611 0.86 -0.1
195,648 + +1.2
195,648 + +1.4
195,648 + -0.8
195,648 + +0.0
195,649 - -0.4
196,005 + Ac3H11_1612 0.39 -0.1
196,128 - Ac3H11_1612 0.54 -0.6
196,358 + Ac3H11_1612 0.83 +0.9
196,358 + Ac3H11_1612 0.83 -0.5
196,358 + Ac3H11_1612 0.83 -0.6
196,358 + Ac3H11_1612 0.83 +1.4
196,358 + Ac3H11_1612 0.83 -0.3
196,358 + Ac3H11_1612 0.83 -1.3
196,358 + Ac3H11_1612 0.83 -0.7
196,358 + Ac3H11_1612 0.83 -1.7
196,359 - Ac3H11_1612 0.83 -2.5
196,359 - Ac3H11_1612 0.83 -0.4
196,359 - Ac3H11_1612 0.83 +1.0
196,364 + Ac3H11_1612 0.84 -1.6
196,364 + Ac3H11_1612 0.84 -2.4
196,365 - Ac3H11_1612 0.84 +0.7
196,365 - Ac3H11_1612 0.84 -0.6
196,365 - Ac3H11_1612 0.84 +0.3
196,365 - Ac3H11_1612 0.84 +0.2
196,365 - Ac3H11_1612 0.84 +0.5
196,458 - +0.0
196,966 - -0.0
197,010 + Ac3H11_1614 0.13 -2.2
197,166 + Ac3H11_1614 0.24 +1.0
197,166 + Ac3H11_1614 0.24 -0.4
197,166 + Ac3H11_1614 0.24 +0.6
197,167 - Ac3H11_1614 0.24 -3.3
197,242 - Ac3H11_1614 0.29 -0.2
197,242 - Ac3H11_1614 0.29 -0.9
197,331 + Ac3H11_1614 0.36 -0.8
197,331 + Ac3H11_1614 0.36 -0.9
197,332 - Ac3H11_1614 0.36 -0.4
197,332 - Ac3H11_1614 0.36 -0.3
197,344 - Ac3H11_1614 0.37 +0.4
197,349 + Ac3H11_1614 0.37 +1.1
197,463 + Ac3H11_1614 0.45 -0.6
197,463 + Ac3H11_1614 0.45 +0.4
197,463 + Ac3H11_1614 0.45 -2.2
197,464 - Ac3H11_1614 0.45 +0.1
197,464 - Ac3H11_1614 0.45 -1.0
197,464 - Ac3H11_1614 0.45 +3.0
197,464 - Ac3H11_1614 0.45 -2.1
197,464 - Ac3H11_1614 0.45 -0.4
197,466 + Ac3H11_1614 0.45 -1.8
197,467 - Ac3H11_1614 0.45 +0.2

Or see this region's nucleotide sequence