Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_138

Experiment: inner cut, R2A soft agar motility assay

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_137 and Ac3H11_138 are separated by 36 nucleotidesAc3H11_138 and Ac3H11_139 are separated by 17 nucleotidesAc3H11_139 and Ac3H11_140 are separated by 3 nucleotides Ac3H11_137 - NADH:flavin oxidoreductases, Old Yellow Enzyme family, at 20,789 to 22,075 _137 Ac3H11_138 - Gluconolactonase, at 22,112 to 23,035 _138 Ac3H11_139 - putative 2-pyrone-4,6-dicarboxylic acid hydrolase, at 23,053 to 23,955 _139 Ac3H11_140 - Tricarboxylate transport protein TctC, at 23,959 to 24,915 _140 Position (kb) 22 23 24Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 21.359 kb on + strand, within Ac3H11_137at 21.359 kb on + strand, within Ac3H11_137at 21.659 kb on + strand, within Ac3H11_137at 21.659 kb on + strand, within Ac3H11_137at 21.660 kb on - strand, within Ac3H11_137at 21.660 kb on - strand, within Ac3H11_137at 21.953 kb on + strandat 21.954 kb on - strandat 21.954 kb on - strandat 21.954 kb on - strandat 21.954 kb on - strandat 21.959 kb on + strandat 21.959 kb on + strandat 21.959 kb on + strandat 21.959 kb on + strandat 21.959 kb on + strandat 21.959 kb on + strandat 21.960 kb on - strandat 21.960 kb on - strandat 21.960 kb on - strandat 21.960 kb on - strandat 21.960 kb on - strandat 22.073 kb on + strandat 22.305 kb on + strand, within Ac3H11_138at 22.305 kb on + strand, within Ac3H11_138at 22.306 kb on - strand, within Ac3H11_138at 22.306 kb on - strand, within Ac3H11_138at 22.306 kb on - strand, within Ac3H11_138at 22.306 kb on - strand, within Ac3H11_138at 22.470 kb on + strand, within Ac3H11_138at 22.470 kb on + strand, within Ac3H11_138at 22.471 kb on - strand, within Ac3H11_138at 22.471 kb on - strand, within Ac3H11_138at 22.549 kb on + strand, within Ac3H11_138at 22.550 kb on - strand, within Ac3H11_138at 22.614 kb on + strand, within Ac3H11_138at 22.614 kb on + strand, within Ac3H11_138at 22.614 kb on + strand, within Ac3H11_138at 22.615 kb on - strand, within Ac3H11_138at 22.615 kb on - strand, within Ac3H11_138at 22.615 kb on - strand, within Ac3H11_138at 22.615 kb on - strand, within Ac3H11_138at 22.615 kb on - strand, within Ac3H11_138at 22.737 kb on + strand, within Ac3H11_138at 22.737 kb on + strand, within Ac3H11_138at 22.738 kb on - strand, within Ac3H11_138at 22.869 kb on + strand, within Ac3H11_138at 22.869 kb on + strand, within Ac3H11_138at 22.870 kb on - strand, within Ac3H11_138at 23.075 kb on + strandat 23.075 kb on + strandat 23.075 kb on + strandat 23.076 kb on - strandat 23.076 kb on - strandat 23.270 kb on + strand, within Ac3H11_139at 23.300 kb on + strand, within Ac3H11_139at 23.300 kb on + strand, within Ac3H11_139at 23.301 kb on - strand, within Ac3H11_139at 23.301 kb on - strand, within Ac3H11_139at 23.301 kb on - strand, within Ac3H11_139at 23.301 kb on - strand, within Ac3H11_139at 23.301 kb on - strand, within Ac3H11_139at 23.301 kb on - strand, within Ac3H11_139at 23.726 kb on + strand, within Ac3H11_139at 23.727 kb on - strand, within Ac3H11_139

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Per-strain Table

Position Strand Gene LocusTag Fraction inner cut, R2A soft agar motility assay
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21,359 + Ac3H11_137 0.44 +0.2
21,359 + Ac3H11_137 0.44 -1.2
21,659 + Ac3H11_137 0.68 +0.7
21,659 + Ac3H11_137 0.68 -1.3
21,660 - Ac3H11_137 0.68 -0.1
21,660 - Ac3H11_137 0.68 -1.8
21,953 + -0.2
21,954 - +0.7
21,954 - -1.0
21,954 - +3.1
21,954 - -0.1
21,959 + -0.5
21,959 + +0.5
21,959 + -2.6
21,959 + +2.9
21,959 + -3.2
21,959 + -0.2
21,960 - -1.6
21,960 - -0.0
21,960 - +0.3
21,960 - -1.6
21,960 - -0.2
22,073 + -1.4
22,305 + Ac3H11_138 0.21 +0.9
22,305 + Ac3H11_138 0.21 +0.8
22,306 - Ac3H11_138 0.21 -0.1
22,306 - Ac3H11_138 0.21 -0.9
22,306 - Ac3H11_138 0.21 -0.4
22,306 - Ac3H11_138 0.21 +0.5
22,470 + Ac3H11_138 0.39 -0.2
22,470 + Ac3H11_138 0.39 +0.7
22,471 - Ac3H11_138 0.39 +1.7
22,471 - Ac3H11_138 0.39 -0.4
22,549 + Ac3H11_138 0.47 -0.1
22,550 - Ac3H11_138 0.47 -1.3
22,614 + Ac3H11_138 0.54 +0.4
22,614 + Ac3H11_138 0.54 -0.6
22,614 + Ac3H11_138 0.54 +3.1
22,615 - Ac3H11_138 0.54 -2.4
22,615 - Ac3H11_138 0.54 +0.2
22,615 - Ac3H11_138 0.54 +1.1
22,615 - Ac3H11_138 0.54 +0.3
22,615 - Ac3H11_138 0.54 -0.4
22,737 + Ac3H11_138 0.68 +0.9
22,737 + Ac3H11_138 0.68 +0.4
22,738 - Ac3H11_138 0.68 +2.0
22,869 + Ac3H11_138 0.82 +0.1
22,869 + Ac3H11_138 0.82 -0.7
22,870 - Ac3H11_138 0.82 +0.2
23,075 + +0.1
23,075 + -0.6
23,075 + -0.2
23,076 - -1.3
23,076 - -0.6
23,270 + Ac3H11_139 0.24 -0.9
23,300 + Ac3H11_139 0.27 +0.7
23,300 + Ac3H11_139 0.27 -1.0
23,301 - Ac3H11_139 0.27 +0.5
23,301 - Ac3H11_139 0.27 +0.1
23,301 - Ac3H11_139 0.27 +0.1
23,301 - Ac3H11_139 0.27 -0.9
23,301 - Ac3H11_139 0.27 +1.6
23,301 - Ac3H11_139 0.27 -0.8
23,726 + Ac3H11_139 0.75 +1.1
23,727 - Ac3H11_139 0.75 +1.9

Or see this region's nucleotide sequence