Experiment: methylglyoxal 0.008 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_27420 and AO353_27425 are separated by 158 nucleotides AO353_27425 and AO353_27430 are separated by 59 nucleotides AO353_27430 and AO353_27435 overlap by 4 nucleotides AO353_27435 and AO353_27440 are separated by 88 nucleotides AO353_27440 and AO353_27445 are separated by 2 nucleotides AO353_27445 and AO353_27450 are separated by 3 nucleotides
AO353_27420: AO353_27420 - DNA-binding protein, at 5,989,327 to 5,989,608
_27420
AO353_27425: AO353_27425 - transcriptional regulator, at 5,989,767 to 5,990,084
_27425
AO353_27430: AO353_27430 - hypothetical protein, at 5,990,144 to 5,990,563
_27430
AO353_27435: AO353_27435 - hypothetical protein, at 5,990,560 to 5,990,781
_27435
AO353_27440: AO353_27440 - hypothetical protein, at 5,990,870 to 5,991,106
_27440
AO353_27445: AO353_27445 - hypothetical protein, at 5,991,109 to 5,991,366
_27445
AO353_27450: AO353_27450 - integrase, at 5,991,370 to 5,992,434
_27450
Position (kb) 5990
5991 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 5989.572 kb on - strand, within AO353_27420 at 5989.572 kb on - strand, within AO353_27420 at 5989.572 kb on - strand, within AO353_27420 at 5989.572 kb on - strand, within AO353_27420 at 5989.614 kb on - strand at 5989.614 kb on - strand at 5989.614 kb on - strand at 5989.760 kb on + strand at 5989.760 kb on + strand at 5989.761 kb on - strand at 5989.761 kb on - strand at 5989.855 kb on + strand, within AO353_27425 at 5989.855 kb on + strand, within AO353_27425 at 5989.856 kb on - strand, within AO353_27425 at 5989.856 kb on - strand, within AO353_27425 at 5989.856 kb on - strand, within AO353_27425 at 5989.856 kb on - strand, within AO353_27425 at 5989.856 kb on - strand, within AO353_27425 at 5989.887 kb on + strand, within AO353_27425 at 5989.887 kb on + strand, within AO353_27425 at 5989.888 kb on - strand, within AO353_27425 at 5989.888 kb on - strand, within AO353_27425 at 5989.888 kb on - strand, within AO353_27425 at 5989.888 kb on - strand, within AO353_27425 at 5989.888 kb on - strand, within AO353_27425 at 5989.989 kb on + strand, within AO353_27425 at 5989.990 kb on - strand, within AO353_27425 at 5990.034 kb on + strand, within AO353_27425 at 5990.034 kb on + strand, within AO353_27425 at 5990.035 kb on - strand, within AO353_27425 at 5990.035 kb on - strand, within AO353_27425 at 5990.035 kb on - strand, within AO353_27425 at 5990.082 kb on + strand at 5990.083 kb on - strand at 5990.083 kb on - strand at 5990.083 kb on - strand at 5990.296 kb on + strand, within AO353_27430 at 5990.296 kb on + strand, within AO353_27430 at 5990.296 kb on + strand, within AO353_27430 at 5990.297 kb on - strand, within AO353_27430 at 5990.307 kb on + strand, within AO353_27430 at 5990.308 kb on - strand, within AO353_27430 at 5990.308 kb on - strand, within AO353_27430 at 5990.308 kb on - strand, within AO353_27430 at 5990.503 kb on + strand, within AO353_27430 at 5990.503 kb on + strand, within AO353_27430 at 5990.504 kb on - strand, within AO353_27430 at 5990.507 kb on - strand, within AO353_27430 at 5990.507 kb on - strand, within AO353_27430 at 5990.663 kb on - strand, within AO353_27435 at 5990.748 kb on - strand, within AO353_27435 at 5990.807 kb on - strand at 5991.010 kb on + strand, within AO353_27440 at 5991.010 kb on + strand, within AO353_27440 at 5991.010 kb on + strand, within AO353_27440 at 5991.010 kb on + strand, within AO353_27440 at 5991.010 kb on + strand, within AO353_27440 at 5991.010 kb on + strand, within AO353_27440 at 5991.010 kb on + strand, within AO353_27440 at 5991.011 kb on - strand, within AO353_27440 at 5991.011 kb on - strand, within AO353_27440 at 5991.011 kb on - strand, within AO353_27440 at 5991.011 kb on - strand, within AO353_27440 at 5991.011 kb on - strand, within AO353_27440 at 5991.012 kb on + strand, within AO353_27440 at 5991.013 kb on - strand, within AO353_27440 at 5991.013 kb on - strand, within AO353_27440 at 5991.013 kb on - strand, within AO353_27440 at 5991.099 kb on - strand at 5991.099 kb on - strand at 5991.100 kb on + strand at 5991.100 kb on + strand at 5991.100 kb on + strand at 5991.100 kb on + strand at 5991.100 kb on + strand at 5991.100 kb on + strand at 5991.100 kb on + strand at 5991.100 kb on + strand at 5991.100 kb on + strand at 5991.100 kb on + strand at 5991.100 kb on + strand at 5991.101 kb on - strand at 5991.101 kb on - strand at 5991.101 kb on - strand at 5991.101 kb on - strand at 5991.101 kb on - strand at 5991.101 kb on - strand at 5991.101 kb on - strand at 5991.101 kb on - strand at 5991.125 kb on - strand at 5991.173 kb on + strand, within AO353_27445 at 5991.173 kb on + strand, within AO353_27445 at 5991.174 kb on - strand, within AO353_27445 at 5991.174 kb on - strand, within AO353_27445 at 5991.185 kb on - strand, within AO353_27445 at 5991.278 kb on - strand, within AO353_27445 at 5991.278 kb on - strand, within AO353_27445 at 5991.293 kb on + strand, within AO353_27445 at 5991.318 kb on + strand, within AO353_27445 at 5991.319 kb on - strand, within AO353_27445 at 5991.359 kb on + strand at 5991.359 kb on + strand at 5991.359 kb on + strand at 5991.360 kb on - strand at 5991.360 kb on - strand at 5991.364 kb on + strand at 5991.364 kb on + strand at 5991.461 kb on - strand at 5991.461 kb on - strand at 5991.461 kb on - strand at 5991.461 kb on - strand at 5991.461 kb on - strand at 5991.463 kb on + strand at 5991.463 kb on + strand at 5991.463 kb on + strand at 5991.464 kb on - strand at 5991.466 kb on + strand at 5991.466 kb on + strand at 5991.466 kb on + strand at 5991.466 kb on + strand at 5991.466 kb on + strand at 5991.466 kb on + strand at 5991.467 kb on - strand at 5991.467 kb on - strand at 5991.467 kb on - strand at 5991.467 kb on - strand at 5991.467 kb on - strand at 5991.467 kb on - strand at 5991.607 kb on + strand, within AO353_27450 at 5991.607 kb on + strand, within AO353_27450 at 5991.607 kb on + strand, within AO353_27450 at 5991.607 kb on + strand, within AO353_27450 at 5991.607 kb on + strand, within AO353_27450 at 5991.608 kb on - strand, within AO353_27450 at 5991.737 kb on - strand, within AO353_27450
Per-strain Table
Position Strand Gene LocusTag Fraction methylglyoxal 0.008 vol% remove 5,989,572 - AO353_27420 0.87 +1.4 5,989,572 - AO353_27420 0.87 +1.9 5,989,572 - AO353_27420 0.87 +0.6 5,989,572 - AO353_27420 0.87 +0.6 5,989,614 - +0.1 5,989,614 - +0.6 5,989,614 - +0.2 5,989,760 + -1.2 5,989,760 + +1.4 5,989,761 - -0.9 5,989,761 - +0.1 5,989,855 + AO353_27425 0.28 +1.0 5,989,855 + AO353_27425 0.28 -0.4 5,989,856 - AO353_27425 0.28 -1.6 5,989,856 - AO353_27425 0.28 +0.4 5,989,856 - AO353_27425 0.28 -0.8 5,989,856 - AO353_27425 0.28 +2.2 5,989,856 - AO353_27425 0.28 -1.4 5,989,887 + AO353_27425 0.38 +0.6 5,989,887 + AO353_27425 0.38 -0.0 5,989,888 - AO353_27425 0.38 +0.1 5,989,888 - AO353_27425 0.38 -0.9 5,989,888 - AO353_27425 0.38 -2.0 5,989,888 - AO353_27425 0.38 +1.2 5,989,888 - AO353_27425 0.38 -0.6 5,989,989 + AO353_27425 0.70 -2.7 5,989,990 - AO353_27425 0.70 +1.4 5,990,034 + AO353_27425 0.84 +0.4 5,990,034 + AO353_27425 0.84 -1.6 5,990,035 - AO353_27425 0.84 -1.7 5,990,035 - AO353_27425 0.84 -0.1 5,990,035 - AO353_27425 0.84 -0.7 5,990,082 + -2.8 5,990,083 - +1.0 5,990,083 - +2.0 5,990,083 - +0.3 5,990,296 + AO353_27430 0.36 -0.1 5,990,296 + AO353_27430 0.36 -1.4 5,990,296 + AO353_27430 0.36 -0.7 5,990,297 - AO353_27430 0.36 -1.4 5,990,307 + AO353_27430 0.39 +0.4 5,990,308 - AO353_27430 0.39 -0.3 5,990,308 - AO353_27430 0.39 +1.0 5,990,308 - AO353_27430 0.39 -1.6 5,990,503 + AO353_27430 0.85 +0.4 5,990,503 + AO353_27430 0.85 +2.4 5,990,504 - AO353_27430 0.86 +0.6 5,990,507 - AO353_27430 0.86 +0.1 5,990,507 - AO353_27430 0.86 -1.7 5,990,663 - AO353_27435 0.46 -0.2 5,990,748 - AO353_27435 0.85 -1.5 5,990,807 - -0.4 5,991,010 + AO353_27440 0.59 +1.4 5,991,010 + AO353_27440 0.59 +0.3 5,991,010 + AO353_27440 0.59 -0.6 5,991,010 + AO353_27440 0.59 -1.1 5,991,010 + AO353_27440 0.59 +0.7 5,991,010 + AO353_27440 0.59 -1.4 5,991,010 + AO353_27440 0.59 +0.4 5,991,011 - AO353_27440 0.59 -1.1 5,991,011 - AO353_27440 0.59 +0.4 5,991,011 - AO353_27440 0.59 -1.1 5,991,011 - AO353_27440 0.59 -1.7 5,991,011 - AO353_27440 0.59 -1.8 5,991,012 + AO353_27440 0.60 +1.1 5,991,013 - AO353_27440 0.60 +0.1 5,991,013 - AO353_27440 0.60 +1.4 5,991,013 - AO353_27440 0.60 +1.9 5,991,099 - +0.3 5,991,099 - +0.7 5,991,100 + -2.1 5,991,100 + +0.4 5,991,100 + +0.1 5,991,100 + -0.6 5,991,100 + +0.9 5,991,100 + +0.0 5,991,100 + -0.4 5,991,100 + -1.7 5,991,100 + +0.3 5,991,100 + -1.4 5,991,100 + +1.1 5,991,101 - -0.7 5,991,101 - -1.6 5,991,101 - -0.3 5,991,101 - -0.5 5,991,101 - -0.3 5,991,101 - +0.2 5,991,101 - -0.1 5,991,101 - +0.9 5,991,125 - +0.0 5,991,173 + AO353_27445 0.25 -1.3 5,991,173 + AO353_27445 0.25 +0.1 5,991,174 - AO353_27445 0.25 -0.4 5,991,174 - AO353_27445 0.25 +0.4 5,991,185 - AO353_27445 0.29 -0.7 5,991,278 - AO353_27445 0.66 +0.4 5,991,278 - AO353_27445 0.66 +0.1 5,991,293 + AO353_27445 0.71 -0.1 5,991,318 + AO353_27445 0.81 -0.4 5,991,319 - AO353_27445 0.81 +2.4 5,991,359 + -0.7 5,991,359 + -0.9 5,991,359 + +0.1 5,991,360 - -1.1 5,991,360 - +1.4 5,991,364 + +0.1 5,991,364 + +0.7 5,991,461 - -0.6 5,991,461 - +1.4 5,991,461 - -0.3 5,991,461 - -1.1 5,991,461 - +1.0 5,991,463 + +0.6 5,991,463 + +0.7 5,991,463 + -0.6 5,991,464 - -0.6 5,991,466 + +0.0 5,991,466 + +0.1 5,991,466 + -0.8 5,991,466 + -1.4 5,991,466 + -0.8 5,991,466 + -0.0 5,991,467 - -2.0 5,991,467 - +1.4 5,991,467 - -0.9 5,991,467 - +0.4 5,991,467 - +0.4 5,991,467 - +0.2 5,991,607 + AO353_27450 0.22 -0.4 5,991,607 + AO353_27450 0.22 -0.5 5,991,607 + AO353_27450 0.22 -1.6 5,991,607 + AO353_27450 0.22 +0.3 5,991,607 + AO353_27450 0.22 -0.6 5,991,608 - AO353_27450 0.22 -2.8 5,991,737 - AO353_27450 0.34 -0.1
Or see this region's nucleotide sequence