Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_27130

Experiment: methylglyoxal 0.008 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_27125 and AO353_27130 are separated by 483 nucleotidesAO353_27130 and AO353_27135 are separated by 206 nucleotidesAO353_27135 and AO353_27140 are separated by 215 nucleotidesAO353_27140 and AO353_27145 are separated by 62 nucleotides AO353_27125: AO353_27125 - hypothetical protein, at 5,942,511 to 5,942,714 _27125 AO353_27130: AO353_27130 - hypothetical protein, at 5,943,198 to 5,943,386 _27130 AO353_27135: AO353_27135 - hypothetical protein, at 5,943,593 to 5,943,814 _27135 AO353_27140: AO353_27140 - hypothetical protein, at 5,944,030 to 5,944,242 _27140 AO353_27145: AO353_27145 - hypothetical protein, at 5,944,305 to 5,944,922 _27145 Position (kb) 5943 5944Strain fitness (log2 ratio) -2 -1 0 1 2 3at 5942.219 kb on + strandat 5942.220 kb on - strandat 5942.233 kb on + strandat 5942.233 kb on + strandat 5942.234 kb on - strandat 5942.274 kb on + strandat 5942.274 kb on + strandat 5942.274 kb on + strandat 5942.275 kb on - strandat 5942.275 kb on - strandat 5942.283 kb on + strandat 5942.284 kb on - strandat 5942.284 kb on - strandat 5942.284 kb on - strandat 5942.284 kb on - strandat 5942.284 kb on - strandat 5942.284 kb on - strandat 5942.329 kb on - strandat 5942.429 kb on + strandat 5942.430 kb on - strandat 5942.430 kb on - strandat 5942.430 kb on - strandat 5942.430 kb on - strandat 5942.431 kb on + strandat 5942.431 kb on + strandat 5942.431 kb on + strandat 5942.431 kb on + strandat 5942.431 kb on + strandat 5942.432 kb on - strandat 5942.432 kb on - strandat 5942.432 kb on - strandat 5942.432 kb on - strandat 5942.432 kb on - strandat 5942.432 kb on - strandat 5942.610 kb on + strand, within AO353_27125at 5942.611 kb on - strand, within AO353_27125at 5942.611 kb on - strand, within AO353_27125at 5942.611 kb on - strand, within AO353_27125at 5942.612 kb on + strand, within AO353_27125at 5942.612 kb on + strand, within AO353_27125at 5942.613 kb on - strand, within AO353_27125at 5942.636 kb on + strand, within AO353_27125at 5942.636 kb on + strand, within AO353_27125at 5942.637 kb on - strand, within AO353_27125at 5942.637 kb on - strand, within AO353_27125at 5942.651 kb on + strand, within AO353_27125at 5942.651 kb on + strand, within AO353_27125at 5942.651 kb on + strand, within AO353_27125at 5942.652 kb on - strand, within AO353_27125at 5942.662 kb on + strand, within AO353_27125at 5942.662 kb on + strand, within AO353_27125at 5942.662 kb on + strand, within AO353_27125at 5942.662 kb on + strand, within AO353_27125at 5942.663 kb on - strand, within AO353_27125at 5942.663 kb on - strand, within AO353_27125at 5942.663 kb on - strand, within AO353_27125at 5942.737 kb on + strandat 5942.737 kb on + strandat 5942.737 kb on + strandat 5942.737 kb on + strandat 5942.738 kb on - strandat 5942.738 kb on - strandat 5942.738 kb on - strandat 5942.738 kb on - strandat 5942.738 kb on - strandat 5942.744 kb on + strandat 5942.744 kb on + strandat 5942.745 kb on - strandat 5942.745 kb on - strandat 5942.745 kb on - strandat 5942.745 kb on - strandat 5942.745 kb on - strandat 5942.745 kb on - strandat 5942.745 kb on - strandat 5942.745 kb on - strandat 5942.786 kb on + strandat 5942.786 kb on + strandat 5942.786 kb on + strandat 5942.786 kb on + strandat 5942.787 kb on - strandat 5942.787 kb on - strandat 5942.787 kb on - strandat 5942.919 kb on + strandat 5943.025 kb on + strandat 5943.025 kb on + strandat 5943.026 kb on - strandat 5943.026 kb on - strandat 5943.026 kb on - strandat 5943.026 kb on - strandat 5943.026 kb on - strandat 5943.032 kb on + strandat 5943.040 kb on + strandat 5943.064 kb on - strandat 5943.064 kb on - strandat 5943.064 kb on - strandat 5943.064 kb on - strandat 5943.087 kb on + strandat 5943.087 kb on + strandat 5943.088 kb on - strandat 5943.088 kb on - strandat 5943.088 kb on - strandat 5943.131 kb on + strandat 5943.132 kb on - strandat 5943.132 kb on - strandat 5943.132 kb on - strandat 5943.144 kb on + strandat 5943.144 kb on + strandat 5943.144 kb on + strandat 5943.144 kb on + strandat 5943.145 kb on - strandat 5943.145 kb on - strandat 5943.145 kb on - strandat 5943.145 kb on - strandat 5943.145 kb on - strandat 5943.145 kb on - strandat 5943.148 kb on + strandat 5943.148 kb on + strandat 5943.148 kb on + strandat 5943.148 kb on + strandat 5943.148 kb on + strandat 5943.149 kb on - strandat 5943.149 kb on - strandat 5943.149 kb on - strandat 5943.195 kb on + strandat 5943.195 kb on + strandat 5943.196 kb on - strandat 5943.196 kb on - strandat 5943.196 kb on - strandat 5943.204 kb on + strandat 5943.205 kb on - strandat 5943.205 kb on - strandat 5943.206 kb on + strandat 5943.206 kb on + strandat 5943.206 kb on + strandat 5943.206 kb on + strandat 5943.206 kb on + strandat 5943.207 kb on - strandat 5943.207 kb on - strandat 5943.207 kb on - strandat 5943.207 kb on - strandat 5943.207 kb on - strandat 5943.207 kb on - strandat 5943.207 kb on - strandat 5943.207 kb on - strandat 5943.207 kb on - strandat 5943.207 kb on - strandat 5943.207 kb on - strandat 5943.328 kb on + strand, within AO353_27130at 5943.328 kb on + strand, within AO353_27130at 5943.328 kb on + strand, within AO353_27130at 5943.329 kb on - strand, within AO353_27130at 5943.337 kb on + strand, within AO353_27130at 5943.407 kb on + strandat 5943.408 kb on - strandat 5943.408 kb on - strandat 5943.447 kb on + strandat 5943.447 kb on + strandat 5943.448 kb on - strandat 5943.448 kb on - strandat 5943.497 kb on + strandat 5943.498 kb on - strandat 5943.498 kb on - strandat 5943.524 kb on - strandat 5943.549 kb on + strandat 5943.549 kb on + strandat 5943.549 kb on + strandat 5943.554 kb on + strandat 5943.572 kb on + strandat 5943.572 kb on + strandat 5943.573 kb on - strandat 5943.573 kb on - strandat 5943.573 kb on - strandat 5943.573 kb on - strandat 5943.573 kb on - strandat 5943.573 kb on - strandat 5943.588 kb on + strandat 5943.641 kb on - strand, within AO353_27135at 5943.641 kb on - strand, within AO353_27135at 5943.641 kb on - strand, within AO353_27135at 5943.644 kb on + strand, within AO353_27135at 5943.644 kb on + strand, within AO353_27135at 5943.687 kb on + strand, within AO353_27135at 5943.688 kb on - strand, within AO353_27135at 5943.688 kb on - strand, within AO353_27135at 5943.688 kb on - strand, within AO353_27135at 5943.727 kb on - strand, within AO353_27135at 5943.739 kb on + strand, within AO353_27135at 5943.763 kb on + strand, within AO353_27135at 5943.764 kb on - strand, within AO353_27135at 5943.799 kb on - strandat 5943.799 kb on - strandat 5943.801 kb on - strandat 5943.807 kb on - strandat 5943.828 kb on + strandat 5943.831 kb on + strandat 5943.831 kb on + strandat 5943.886 kb on + strandat 5943.886 kb on + strandat 5943.934 kb on - strandat 5943.934 kb on - strandat 5943.948 kb on - strandat 5943.969 kb on + strandat 5943.969 kb on + strandat 5943.970 kb on - strandat 5944.019 kb on - strandat 5944.304 kb on + strandat 5944.304 kb on + strandat 5944.314 kb on - strandat 5944.359 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction methylglyoxal 0.008 vol%
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5,942,219 + +0.4
5,942,220 - +0.4
5,942,233 + +0.1
5,942,233 + +1.1
5,942,234 - -0.3
5,942,274 + -1.7
5,942,274 + -0.6
5,942,274 + +1.1
5,942,275 - +0.4
5,942,275 - -0.3
5,942,283 + +1.0
5,942,284 - -1.1
5,942,284 - -0.6
5,942,284 - -0.0
5,942,284 - -0.1
5,942,284 - +1.6
5,942,284 - +1.1
5,942,329 - +1.0
5,942,429 + +1.4
5,942,430 - -0.6
5,942,430 - +0.7
5,942,430 - -0.7
5,942,430 - -1.3
5,942,431 + +0.9
5,942,431 + +1.4
5,942,431 + +0.4
5,942,431 + +1.2
5,942,431 + -1.6
5,942,432 - -0.2
5,942,432 - -1.0
5,942,432 - -0.6
5,942,432 - -0.1
5,942,432 - +0.6
5,942,432 - +0.3
5,942,610 + AO353_27125 0.49 -2.5
5,942,611 - AO353_27125 0.49 -0.9
5,942,611 - AO353_27125 0.49 +0.9
5,942,611 - AO353_27125 0.49 -0.6
5,942,612 + AO353_27125 0.50 -2.5
5,942,612 + AO353_27125 0.50 +1.0
5,942,613 - AO353_27125 0.50 -2.1
5,942,636 + AO353_27125 0.61 +2.4
5,942,636 + AO353_27125 0.61 +1.3
5,942,637 - AO353_27125 0.62 -1.0
5,942,637 - AO353_27125 0.62 +0.2
5,942,651 + AO353_27125 0.69 -1.4
5,942,651 + AO353_27125 0.69 -0.9
5,942,651 + AO353_27125 0.69 -1.4
5,942,652 - AO353_27125 0.69 +0.2
5,942,662 + AO353_27125 0.74 -1.7
5,942,662 + AO353_27125 0.74 +0.4
5,942,662 + AO353_27125 0.74 +0.1
5,942,662 + AO353_27125 0.74 -0.1
5,942,663 - AO353_27125 0.75 -0.1
5,942,663 - AO353_27125 0.75 -0.1
5,942,663 - AO353_27125 0.75 -1.2
5,942,737 + -1.0
5,942,737 + -1.4
5,942,737 + +1.0
5,942,737 + -1.0
5,942,738 - +0.7
5,942,738 - +0.6
5,942,738 - -0.6
5,942,738 - +1.0
5,942,738 - -1.6
5,942,744 + -0.1
5,942,744 + +0.7
5,942,745 - -0.1
5,942,745 - +0.4
5,942,745 - +1.1
5,942,745 - -0.9
5,942,745 - +0.0
5,942,745 - +1.1
5,942,745 - +0.1
5,942,745 - -0.4
5,942,786 + -1.1
5,942,786 + +0.5
5,942,786 + -0.3
5,942,786 + -2.6
5,942,787 - -0.3
5,942,787 - +0.4
5,942,787 - +2.0
5,942,919 + +0.4
5,943,025 + -0.1
5,943,025 + +3.0
5,943,026 - -0.4
5,943,026 - +1.0
5,943,026 - +0.2
5,943,026 - +1.4
5,943,026 - -0.1
5,943,032 + +0.4
5,943,040 + -0.1
5,943,064 - -0.3
5,943,064 - -0.9
5,943,064 - +1.4
5,943,064 - +0.0
5,943,087 + +0.6
5,943,087 + +0.7
5,943,088 - +0.9
5,943,088 - +0.4
5,943,088 - -0.4
5,943,131 + -1.1
5,943,132 - +0.3
5,943,132 - -0.6
5,943,132 - -0.0
5,943,144 + +0.4
5,943,144 + +0.0
5,943,144 + -0.8
5,943,144 + -0.6
5,943,145 - -0.1
5,943,145 - -1.1
5,943,145 - +0.1
5,943,145 - -0.4
5,943,145 - +1.4
5,943,145 - -2.1
5,943,148 + +0.1
5,943,148 + +1.2
5,943,148 + -2.0
5,943,148 + -0.4
5,943,148 + -1.1
5,943,149 - +1.0
5,943,149 - -0.4
5,943,149 - -0.2
5,943,195 + +1.4
5,943,195 + -0.1
5,943,196 - -0.8
5,943,196 - -0.5
5,943,196 - -0.6
5,943,204 + -1.3
5,943,205 - +0.4
5,943,205 - +0.3
5,943,206 + +0.4
5,943,206 + +0.6
5,943,206 + +1.4
5,943,206 + -0.3
5,943,206 + +1.3
5,943,207 - -0.3
5,943,207 - +1.1
5,943,207 - +1.9
5,943,207 - -0.4
5,943,207 - -0.9
5,943,207 - -0.1
5,943,207 - -1.0
5,943,207 - +0.2
5,943,207 - -2.0
5,943,207 - +2.4
5,943,207 - +0.2
5,943,328 + AO353_27130 0.69 -1.4
5,943,328 + AO353_27130 0.69 -0.3
5,943,328 + AO353_27130 0.69 -2.0
5,943,329 - AO353_27130 0.69 -1.1
5,943,337 + AO353_27130 0.74 -0.1
5,943,407 + -0.6
5,943,408 - -0.4
5,943,408 - +0.1
5,943,447 + -0.6
5,943,447 + +1.1
5,943,448 - +0.4
5,943,448 - +1.0
5,943,497 + -1.9
5,943,498 - -1.1
5,943,498 - -2.1
5,943,524 - +0.6
5,943,549 + -0.3
5,943,549 + +0.0
5,943,549 + +0.6
5,943,554 + -0.9
5,943,572 + -0.1
5,943,572 + -1.1
5,943,573 - -0.7
5,943,573 - -0.1
5,943,573 - +1.4
5,943,573 - -0.2
5,943,573 - -0.7
5,943,573 - +0.6
5,943,588 + -0.3
5,943,641 - AO353_27135 0.22 +0.3
5,943,641 - AO353_27135 0.22 -0.6
5,943,641 - AO353_27135 0.22 +0.8
5,943,644 + AO353_27135 0.23 +1.1
5,943,644 + AO353_27135 0.23 -0.6
5,943,687 + AO353_27135 0.42 -0.7
5,943,688 - AO353_27135 0.43 -0.3
5,943,688 - AO353_27135 0.43 +0.7
5,943,688 - AO353_27135 0.43 -1.0
5,943,727 - AO353_27135 0.60 +0.0
5,943,739 + AO353_27135 0.66 +0.7
5,943,763 + AO353_27135 0.77 -0.2
5,943,764 - AO353_27135 0.77 -0.1
5,943,799 - +0.2
5,943,799 - +0.4
5,943,801 - -1.1
5,943,807 - -0.1
5,943,828 + -0.6
5,943,831 + +0.4
5,943,831 + -1.1
5,943,886 + -0.9
5,943,886 + +1.9
5,943,934 - +3.0
5,943,934 - +1.2
5,943,948 - +0.1
5,943,969 + -1.5
5,943,969 + -0.2
5,943,970 - +1.6
5,944,019 - -2.5
5,944,304 + +0.1
5,944,304 + -1.4
5,944,314 - +1.0
5,944,359 - -0.1

Or see this region's nucleotide sequence