Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_23910

Experiment: methylglyoxal 0.008 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_23905 and AO353_23910 are separated by 2 nucleotidesAO353_23910 and AO353_23915 are separated by 179 nucleotides AO353_23905: AO353_23905 - GntR family transcriptional regulator, at 5,245,604 to 5,246,482 _23905 AO353_23910: AO353_23910 - response regulator, at 5,246,485 to 5,246,847 _23910 AO353_23915: AO353_23915 - chemotaxis protein CheY, at 5,247,027 to 5,250,494 _23915 Position (kb) 5246 5247Strain fitness (log2 ratio) -2 -1 0 1 2at 5245.499 kb on + strandat 5245.499 kb on + strandat 5245.499 kb on + strandat 5245.499 kb on + strandat 5245.500 kb on - strandat 5245.530 kb on + strandat 5245.540 kb on + strandat 5245.540 kb on + strandat 5245.541 kb on - strandat 5245.541 kb on - strandat 5245.541 kb on - strandat 5245.541 kb on - strandat 5245.541 kb on - strandat 5245.674 kb on + strandat 5245.675 kb on - strandat 5245.758 kb on - strandat 5245.758 kb on - strand, within AO353_23905at 5245.817 kb on - strand, within AO353_23905at 5245.877 kb on + strand, within AO353_23905at 5245.877 kb on + strand, within AO353_23905at 5245.878 kb on - strand, within AO353_23905at 5246.244 kb on + strand, within AO353_23905at 5246.245 kb on - strand, within AO353_23905at 5246.245 kb on - strand, within AO353_23905at 5246.245 kb on - strand, within AO353_23905at 5246.266 kb on + strand, within AO353_23905at 5246.266 kb on + strand, within AO353_23905at 5246.267 kb on - strand, within AO353_23905at 5246.326 kb on + strand, within AO353_23905at 5246.327 kb on - strand, within AO353_23905at 5246.452 kb on + strandat 5246.452 kb on + strandat 5246.494 kb on - strandat 5246.575 kb on - strand, within AO353_23910at 5246.575 kb on - strand, within AO353_23910at 5246.575 kb on - strand, within AO353_23910at 5246.777 kb on - strand, within AO353_23910at 5246.777 kb on - strand, within AO353_23910at 5246.805 kb on + strand, within AO353_23910at 5246.806 kb on - strand, within AO353_23910at 5246.819 kb on - strandat 5246.891 kb on + strandat 5246.891 kb on + strandat 5246.891 kb on + strandat 5246.891 kb on + strandat 5246.891 kb on + strandat 5246.891 kb on + strandat 5246.892 kb on - strandat 5246.892 kb on - strandat 5246.892 kb on - strandat 5246.892 kb on - strandat 5246.961 kb on + strandat 5246.962 kb on - strandat 5247.003 kb on - strandat 5247.003 kb on - strandat 5247.144 kb on + strandat 5247.144 kb on + strandat 5247.144 kb on + strandat 5247.144 kb on + strandat 5247.144 kb on + strandat 5247.144 kb on + strandat 5247.144 kb on + strandat 5247.144 kb on + strandat 5247.145 kb on - strandat 5247.145 kb on - strandat 5247.145 kb on - strandat 5247.145 kb on - strandat 5247.145 kb on - strandat 5247.145 kb on - strandat 5247.409 kb on - strand, within AO353_23915at 5247.510 kb on + strand, within AO353_23915at 5247.510 kb on + strand, within AO353_23915at 5247.511 kb on - strand, within AO353_23915at 5247.597 kb on + strand, within AO353_23915at 5247.598 kb on - strand, within AO353_23915at 5247.636 kb on + strand, within AO353_23915at 5247.637 kb on - strand, within AO353_23915at 5247.637 kb on - strand, within AO353_23915at 5247.637 kb on - strand, within AO353_23915at 5247.676 kb on - strand, within AO353_23915at 5247.676 kb on - strand, within AO353_23915at 5247.788 kb on - strand, within AO353_23915at 5247.806 kb on + strand, within AO353_23915at 5247.806 kb on + strand, within AO353_23915at 5247.806 kb on + strand, within AO353_23915

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Per-strain Table

Position Strand Gene LocusTag Fraction methylglyoxal 0.008 vol%
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5,245,499 + -0.1
5,245,499 + +0.7
5,245,499 + -1.6
5,245,499 + -0.6
5,245,500 - -1.3
5,245,530 + -1.3
5,245,540 + +0.0
5,245,540 + -1.0
5,245,541 - -2.2
5,245,541 - +0.7
5,245,541 - +2.0
5,245,541 - +0.7
5,245,541 - -2.4
5,245,674 + +0.7
5,245,675 - +0.4
5,245,758 - -1.2
5,245,758 - AO353_23905 0.18 +0.1
5,245,817 - AO353_23905 0.24 -0.3
5,245,877 + AO353_23905 0.31 -0.9
5,245,877 + AO353_23905 0.31 +1.1
5,245,878 - AO353_23905 0.31 +1.4
5,246,244 + AO353_23905 0.73 +0.4
5,246,245 - AO353_23905 0.73 +0.8
5,246,245 - AO353_23905 0.73 +0.4
5,246,245 - AO353_23905 0.73 +2.0
5,246,266 + AO353_23905 0.75 +0.9
5,246,266 + AO353_23905 0.75 +2.1
5,246,267 - AO353_23905 0.75 +0.0
5,246,326 + AO353_23905 0.82 -0.9
5,246,327 - AO353_23905 0.82 +0.1
5,246,452 + +0.2
5,246,452 + +0.1
5,246,494 - +0.4
5,246,575 - AO353_23910 0.25 -0.4
5,246,575 - AO353_23910 0.25 -0.6
5,246,575 - AO353_23910 0.25 -1.2
5,246,777 - AO353_23910 0.80 -0.6
5,246,777 - AO353_23910 0.80 -0.8
5,246,805 + AO353_23910 0.88 +0.4
5,246,806 - AO353_23910 0.88 -1.4
5,246,819 - +0.4
5,246,891 + -0.2
5,246,891 + +0.4
5,246,891 + -0.5
5,246,891 + +0.2
5,246,891 + +1.0
5,246,891 + +0.8
5,246,892 - -0.2
5,246,892 - +0.8
5,246,892 - -0.2
5,246,892 - +0.0
5,246,961 + +0.9
5,246,962 - -0.9
5,247,003 - +1.6
5,247,003 - -0.2
5,247,144 + -1.2
5,247,144 + +0.0
5,247,144 + -0.6
5,247,144 + -1.7
5,247,144 + -1.6
5,247,144 + -0.0
5,247,144 + -2.1
5,247,144 + +2.4
5,247,145 - -0.1
5,247,145 - -0.6
5,247,145 - +1.6
5,247,145 - +0.0
5,247,145 - +1.8
5,247,145 - -1.0
5,247,409 - AO353_23915 0.11 -0.9
5,247,510 + AO353_23915 0.14 +0.4
5,247,510 + AO353_23915 0.14 +0.7
5,247,511 - AO353_23915 0.14 -0.3
5,247,597 + AO353_23915 0.16 -0.0
5,247,598 - AO353_23915 0.16 -0.2
5,247,636 + AO353_23915 0.18 +1.1
5,247,637 - AO353_23915 0.18 +1.6
5,247,637 - AO353_23915 0.18 +1.6
5,247,637 - AO353_23915 0.18 -0.0
5,247,676 - AO353_23915 0.19 +0.6
5,247,676 - AO353_23915 0.19 +0.5
5,247,788 - AO353_23915 0.22 -1.2
5,247,806 + AO353_23915 0.22 -0.0
5,247,806 + AO353_23915 0.22 -0.3
5,247,806 + AO353_23915 0.22 -0.6

Or see this region's nucleotide sequence