Experiment: methylglyoxal 0.008 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_21445 and AO353_21450 overlap by 4 nucleotides AO353_21450 and AO353_21455 overlap by 4 nucleotides AO353_21455 and AO353_21460 overlap by 4 nucleotides AO353_21460 and AO353_21465 overlap by 4 nucleotides AO353_21465 and AO353_21470 overlap by 1 nucleotides
AO353_21445: AO353_21445 - cation:proton antiporter, at 4,692,698 to 4,693,066
_21445
AO353_21450: AO353_21450 - cation:proton antiporter, at 4,693,063 to 4,693,341
_21450
AO353_21455: AO353_21455 - cation:proton antiporter, at 4,693,338 to 4,693,826
_21455
AO353_21460: AO353_21460 - cation:proton antiporter, at 4,693,823 to 4,695,508
_21460
AO353_21465: AO353_21465 - cation:proton antiporter, at 4,695,505 to 4,695,849
_21465
AO353_21470: AO353_21470 - cation:proton antiporter, at 4,695,849 to 4,698,767
_21470
Position (kb) 4693
4694
4695
4696 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4692.951 kb on + strand, within AO353_21445 at 4692.951 kb on + strand, within AO353_21445 at 4692.951 kb on + strand, within AO353_21445 at 4692.951 kb on + strand, within AO353_21445 at 4692.951 kb on + strand, within AO353_21445 at 4692.952 kb on - strand, within AO353_21445 at 4693.154 kb on + strand, within AO353_21450 at 4693.154 kb on + strand, within AO353_21450 at 4693.154 kb on + strand, within AO353_21450 at 4693.154 kb on + strand, within AO353_21450 at 4693.154 kb on + strand, within AO353_21450 at 4693.154 kb on + strand, within AO353_21450 at 4693.154 kb on + strand, within AO353_21450 at 4693.155 kb on - strand, within AO353_21450 at 4693.155 kb on - strand, within AO353_21450 at 4693.155 kb on - strand, within AO353_21450 at 4693.155 kb on - strand, within AO353_21450 at 4693.170 kb on - strand, within AO353_21450 at 4693.209 kb on + strand, within AO353_21450 at 4693.211 kb on + strand, within AO353_21450 at 4693.211 kb on + strand, within AO353_21450 at 4693.211 kb on + strand, within AO353_21450 at 4693.211 kb on + strand, within AO353_21450 at 4693.211 kb on + strand, within AO353_21450 at 4693.211 kb on + strand, within AO353_21450 at 4693.211 kb on + strand, within AO353_21450 at 4693.211 kb on + strand, within AO353_21450 at 4693.211 kb on + strand, within AO353_21450 at 4693.211 kb on + strand, within AO353_21450 at 4693.211 kb on + strand, within AO353_21450 at 4693.212 kb on - strand, within AO353_21450 at 4693.212 kb on - strand, within AO353_21450 at 4693.212 kb on - strand, within AO353_21450 at 4693.212 kb on - strand, within AO353_21450 at 4693.212 kb on - strand, within AO353_21450 at 4693.212 kb on - strand, within AO353_21450 at 4693.212 kb on - strand, within AO353_21450 at 4693.212 kb on - strand, within AO353_21450 at 4693.217 kb on + strand, within AO353_21450 at 4693.217 kb on + strand, within AO353_21450 at 4693.218 kb on - strand, within AO353_21450 at 4693.218 kb on - strand, within AO353_21450 at 4693.218 kb on - strand, within AO353_21450 at 4693.218 kb on - strand, within AO353_21450 at 4693.369 kb on + strand at 4693.369 kb on + strand at 4693.369 kb on + strand at 4693.369 kb on + strand at 4693.369 kb on + strand at 4693.369 kb on + strand at 4693.369 kb on + strand at 4693.369 kb on + strand at 4693.369 kb on + strand at 4693.370 kb on - strand at 4693.370 kb on - strand at 4693.370 kb on - strand at 4693.370 kb on - strand at 4693.370 kb on - strand at 4693.370 kb on - strand at 4693.667 kb on + strand, within AO353_21455 at 4693.734 kb on + strand, within AO353_21455 at 4693.735 kb on - strand, within AO353_21455 at 4693.735 kb on - strand, within AO353_21455 at 4693.899 kb on + strand at 4693.899 kb on + strand at 4693.899 kb on + strand at 4693.899 kb on + strand at 4693.899 kb on + strand at 4693.899 kb on + strand at 4693.899 kb on + strand at 4693.899 kb on + strand at 4693.899 kb on + strand at 4693.900 kb on - strand at 4693.900 kb on - strand at 4693.900 kb on - strand at 4693.900 kb on - strand at 4693.900 kb on - strand at 4693.976 kb on + strand at 4693.976 kb on + strand at 4693.976 kb on + strand at 4693.976 kb on + strand at 4693.976 kb on + strand at 4693.976 kb on + strand at 4693.977 kb on - strand at 4693.977 kb on - strand at 4693.977 kb on - strand at 4693.977 kb on - strand at 4694.198 kb on - strand, within AO353_21460 at 4694.490 kb on + strand, within AO353_21460 at 4694.490 kb on + strand, within AO353_21460 at 4694.490 kb on + strand, within AO353_21460 at 4694.490 kb on + strand, within AO353_21460 at 4694.490 kb on + strand, within AO353_21460 at 4694.490 kb on + strand, within AO353_21460 at 4694.491 kb on - strand, within AO353_21460 at 4694.626 kb on + strand, within AO353_21460 at 4694.626 kb on + strand, within AO353_21460 at 4694.626 kb on + strand, within AO353_21460 at 4694.626 kb on + strand, within AO353_21460 at 4694.627 kb on - strand, within AO353_21460 at 4694.627 kb on - strand, within AO353_21460 at 4694.627 kb on - strand, within AO353_21460 at 4694.627 kb on - strand, within AO353_21460 at 4694.627 kb on - strand, within AO353_21460 at 4694.647 kb on - strand, within AO353_21460 at 4694.647 kb on - strand, within AO353_21460 at 4694.647 kb on - strand, within AO353_21460 at 4694.670 kb on + strand, within AO353_21460 at 4694.670 kb on + strand, within AO353_21460 at 4694.671 kb on - strand, within AO353_21460 at 4694.727 kb on + strand, within AO353_21460 at 4694.727 kb on + strand, within AO353_21460 at 4694.728 kb on - strand, within AO353_21460 at 4694.728 kb on - strand, within AO353_21460 at 4694.728 kb on - strand, within AO353_21460 at 4694.787 kb on + strand, within AO353_21460 at 4694.787 kb on + strand, within AO353_21460 at 4694.788 kb on - strand, within AO353_21460 at 4694.949 kb on + strand, within AO353_21460 at 4694.949 kb on + strand, within AO353_21460 at 4694.950 kb on - strand, within AO353_21460 at 4694.950 kb on - strand, within AO353_21460 at 4694.950 kb on - strand, within AO353_21460 at 4694.950 kb on - strand, within AO353_21460 at 4694.950 kb on - strand, within AO353_21460 at 4694.950 kb on - strand, within AO353_21460 at 4694.950 kb on - strand, within AO353_21460 at 4694.950 kb on - strand, within AO353_21460 at 4694.950 kb on - strand, within AO353_21460 at 4695.006 kb on + strand, within AO353_21460 at 4695.006 kb on + strand, within AO353_21460 at 4695.006 kb on + strand, within AO353_21460 at 4695.006 kb on + strand, within AO353_21460 at 4695.006 kb on + strand, within AO353_21460 at 4695.006 kb on + strand, within AO353_21460 at 4695.007 kb on - strand, within AO353_21460 at 4695.007 kb on - strand, within AO353_21460 at 4695.007 kb on - strand, within AO353_21460 at 4695.007 kb on - strand, within AO353_21460 at 4695.007 kb on - strand, within AO353_21460 at 4695.060 kb on + strand, within AO353_21460 at 4695.061 kb on - strand, within AO353_21460 at 4695.129 kb on + strand, within AO353_21460 at 4695.362 kb on + strand at 4695.475 kb on + strand at 4695.475 kb on + strand at 4695.475 kb on + strand at 4695.476 kb on - strand at 4695.476 kb on - strand at 4695.476 kb on - strand at 4695.476 kb on - strand at 4695.619 kb on + strand, within AO353_21465 at 4695.619 kb on + strand, within AO353_21465 at 4695.647 kb on + strand, within AO353_21465 at 4695.647 kb on + strand, within AO353_21465 at 4695.647 kb on + strand, within AO353_21465 at 4695.879 kb on - strand at 4695.879 kb on - strand at 4695.951 kb on + strand at 4695.951 kb on + strand at 4695.952 kb on - strand at 4695.964 kb on + strand at 4695.964 kb on + strand at 4695.964 kb on + strand at 4695.964 kb on + strand at 4695.965 kb on - strand at 4695.965 kb on - strand at 4695.965 kb on - strand at 4695.998 kb on + strand at 4695.999 kb on - strand at 4696.174 kb on + strand, within AO353_21470 at 4696.174 kb on + strand, within AO353_21470 at 4696.174 kb on + strand, within AO353_21470 at 4696.174 kb on + strand, within AO353_21470 at 4696.174 kb on + strand, within AO353_21470 at 4696.174 kb on + strand, within AO353_21470 at 4696.174 kb on + strand, within AO353_21470 at 4696.174 kb on + strand, within AO353_21470 at 4696.174 kb on + strand, within AO353_21470 at 4696.174 kb on + strand, within AO353_21470 at 4696.174 kb on + strand, within AO353_21470 at 4696.174 kb on + strand, within AO353_21470 at 4696.174 kb on + strand, within AO353_21470 at 4696.174 kb on + strand, within AO353_21470 at 4696.175 kb on - strand, within AO353_21470 at 4696.175 kb on - strand, within AO353_21470 at 4696.175 kb on - strand, within AO353_21470 at 4696.175 kb on - strand, within AO353_21470 at 4696.175 kb on - strand, within AO353_21470 at 4696.175 kb on - strand, within AO353_21470 at 4696.175 kb on - strand, within AO353_21470 at 4696.255 kb on + strand, within AO353_21470 at 4696.255 kb on + strand, within AO353_21470 at 4696.255 kb on + strand, within AO353_21470 at 4696.255 kb on + strand, within AO353_21470 at 4696.256 kb on - strand, within AO353_21470 at 4696.256 kb on - strand, within AO353_21470 at 4696.284 kb on + strand, within AO353_21470 at 4696.401 kb on + strand, within AO353_21470
Per-strain Table
Position Strand Gene LocusTag Fraction methylglyoxal 0.008 vol% remove 4,692,951 + AO353_21445 0.69 -0.6 4,692,951 + AO353_21445 0.69 +1.0 4,692,951 + AO353_21445 0.69 -1.0 4,692,951 + AO353_21445 0.69 -0.4 4,692,951 + AO353_21445 0.69 +0.5 4,692,952 - AO353_21445 0.69 -0.5 4,693,154 + AO353_21450 0.33 -0.6 4,693,154 + AO353_21450 0.33 +0.3 4,693,154 + AO353_21450 0.33 +0.3 4,693,154 + AO353_21450 0.33 +0.2 4,693,154 + AO353_21450 0.33 -1.4 4,693,154 + AO353_21450 0.33 -1.5 4,693,154 + AO353_21450 0.33 -2.8 4,693,155 - AO353_21450 0.33 -0.5 4,693,155 - AO353_21450 0.33 -1.4 4,693,155 - AO353_21450 0.33 -0.3 4,693,155 - AO353_21450 0.33 -1.1 4,693,170 - AO353_21450 0.38 -1.5 4,693,209 + AO353_21450 0.52 +0.9 4,693,211 + AO353_21450 0.53 -0.8 4,693,211 + AO353_21450 0.53 +0.2 4,693,211 + AO353_21450 0.53 -1.1 4,693,211 + AO353_21450 0.53 -0.4 4,693,211 + AO353_21450 0.53 -2.1 4,693,211 + AO353_21450 0.53 -1.0 4,693,211 + AO353_21450 0.53 -1.1 4,693,211 + AO353_21450 0.53 +0.2 4,693,211 + AO353_21450 0.53 -0.5 4,693,211 + AO353_21450 0.53 -1.1 4,693,211 + AO353_21450 0.53 -0.2 4,693,212 - AO353_21450 0.53 +0.0 4,693,212 - AO353_21450 0.53 +0.9 4,693,212 - AO353_21450 0.53 -1.7 4,693,212 - AO353_21450 0.53 +0.9 4,693,212 - AO353_21450 0.53 -0.1 4,693,212 - AO353_21450 0.53 -1.4 4,693,212 - AO353_21450 0.53 -0.4 4,693,212 - AO353_21450 0.53 +0.2 4,693,217 + AO353_21450 0.55 -1.5 4,693,217 + AO353_21450 0.55 -0.5 4,693,218 - AO353_21450 0.56 -1.7 4,693,218 - AO353_21450 0.56 -0.1 4,693,218 - AO353_21450 0.56 -0.9 4,693,218 - AO353_21450 0.56 -1.5 4,693,369 + -1.1 4,693,369 + -1.0 4,693,369 + -0.6 4,693,369 + +1.5 4,693,369 + -0.9 4,693,369 + +0.0 4,693,369 + -3.2 4,693,369 + -0.1 4,693,369 + -1.4 4,693,370 - -0.7 4,693,370 - +0.1 4,693,370 - -2.4 4,693,370 - -1.4 4,693,370 - +1.3 4,693,370 - -0.4 4,693,667 + AO353_21455 0.67 -1.4 4,693,734 + AO353_21455 0.81 -0.1 4,693,735 - AO353_21455 0.81 +1.4 4,693,735 - AO353_21455 0.81 -1.9 4,693,899 + +0.6 4,693,899 + -1.6 4,693,899 + -0.9 4,693,899 + -0.1 4,693,899 + +1.4 4,693,899 + -0.6 4,693,899 + -0.1 4,693,899 + +0.5 4,693,899 + -0.6 4,693,900 - -0.1 4,693,900 - -1.4 4,693,900 - -1.4 4,693,900 - -2.0 4,693,900 - -1.9 4,693,976 + -0.1 4,693,976 + -1.9 4,693,976 + +1.0 4,693,976 + -0.1 4,693,976 + -0.8 4,693,976 + -0.9 4,693,977 - -0.1 4,693,977 - -1.4 4,693,977 - -1.6 4,693,977 - -0.1 4,694,198 - AO353_21460 0.22 +1.0 4,694,490 + AO353_21460 0.40 -2.0 4,694,490 + AO353_21460 0.40 -1.4 4,694,490 + AO353_21460 0.40 -1.4 4,694,490 + AO353_21460 0.40 -0.5 4,694,490 + AO353_21460 0.40 -0.3 4,694,490 + AO353_21460 0.40 -1.7 4,694,491 - AO353_21460 0.40 +0.3 4,694,626 + AO353_21460 0.48 -2.1 4,694,626 + AO353_21460 0.48 -0.9 4,694,626 + AO353_21460 0.48 -0.9 4,694,626 + AO353_21460 0.48 +0.9 4,694,627 - AO353_21460 0.48 -1.1 4,694,627 - AO353_21460 0.48 -0.4 4,694,627 - AO353_21460 0.48 -1.1 4,694,627 - AO353_21460 0.48 -0.4 4,694,627 - AO353_21460 0.48 -1.4 4,694,647 - AO353_21460 0.49 +1.0 4,694,647 - AO353_21460 0.49 -0.3 4,694,647 - AO353_21460 0.49 +1.6 4,694,670 + AO353_21460 0.50 -1.1 4,694,670 + AO353_21460 0.50 -0.4 4,694,671 - AO353_21460 0.50 +0.3 4,694,727 + AO353_21460 0.54 -2.6 4,694,727 + AO353_21460 0.54 -0.9 4,694,728 - AO353_21460 0.54 -0.1 4,694,728 - AO353_21460 0.54 -1.6 4,694,728 - AO353_21460 0.54 -0.9 4,694,787 + AO353_21460 0.57 -2.1 4,694,787 + AO353_21460 0.57 -1.6 4,694,788 - AO353_21460 0.57 -0.4 4,694,949 + AO353_21460 0.67 -1.7 4,694,949 + AO353_21460 0.67 -0.8 4,694,950 - AO353_21460 0.67 -2.0 4,694,950 - AO353_21460 0.67 -1.7 4,694,950 - AO353_21460 0.67 -0.1 4,694,950 - AO353_21460 0.67 +0.7 4,694,950 - AO353_21460 0.67 -1.3 4,694,950 - AO353_21460 0.67 -1.7 4,694,950 - AO353_21460 0.67 -1.9 4,694,950 - AO353_21460 0.67 -0.1 4,694,950 - AO353_21460 0.67 -0.5 4,695,006 + AO353_21460 0.70 -0.1 4,695,006 + AO353_21460 0.70 -0.1 4,695,006 + AO353_21460 0.70 -0.0 4,695,006 + AO353_21460 0.70 -1.9 4,695,006 + AO353_21460 0.70 -2.1 4,695,006 + AO353_21460 0.70 -0.3 4,695,007 - AO353_21460 0.70 +0.9 4,695,007 - AO353_21460 0.70 -0.5 4,695,007 - AO353_21460 0.70 -2.4 4,695,007 - AO353_21460 0.70 -1.6 4,695,007 - AO353_21460 0.70 -0.6 4,695,060 + AO353_21460 0.73 -0.1 4,695,061 - AO353_21460 0.73 +0.1 4,695,129 + AO353_21460 0.77 -1.0 4,695,362 + +1.3 4,695,475 + -2.0 4,695,475 + -1.7 4,695,475 + +0.8 4,695,476 - +0.4 4,695,476 - +1.4 4,695,476 - -0.1 4,695,476 - -1.1 4,695,619 + AO353_21465 0.33 -1.4 4,695,619 + AO353_21465 0.33 -1.6 4,695,647 + AO353_21465 0.41 -0.6 4,695,647 + AO353_21465 0.41 -0.6 4,695,647 + AO353_21465 0.41 -1.7 4,695,879 - -1.9 4,695,879 - -1.6 4,695,951 + -1.6 4,695,951 + -0.0 4,695,952 - -1.7 4,695,964 + -0.4 4,695,964 + -2.0 4,695,964 + -0.6 4,695,964 + -0.0 4,695,965 - -2.6 4,695,965 - -0.6 4,695,965 - -0.9 4,695,998 + -0.6 4,695,999 - -1.7 4,696,174 + AO353_21470 0.11 +1.4 4,696,174 + AO353_21470 0.11 -0.3 4,696,174 + AO353_21470 0.11 -0.7 4,696,174 + AO353_21470 0.11 +1.3 4,696,174 + AO353_21470 0.11 -0.4 4,696,174 + AO353_21470 0.11 -2.1 4,696,174 + AO353_21470 0.11 -0.7 4,696,174 + AO353_21470 0.11 -0.1 4,696,174 + AO353_21470 0.11 -0.5 4,696,174 + AO353_21470 0.11 +0.4 4,696,174 + AO353_21470 0.11 +0.4 4,696,174 + AO353_21470 0.11 -1.7 4,696,174 + AO353_21470 0.11 -0.3 4,696,174 + AO353_21470 0.11 -1.5 4,696,175 - AO353_21470 0.11 +0.0 4,696,175 - AO353_21470 0.11 +0.4 4,696,175 - AO353_21470 0.11 -1.5 4,696,175 - AO353_21470 0.11 +1.8 4,696,175 - AO353_21470 0.11 -0.7 4,696,175 - AO353_21470 0.11 -0.7 4,696,175 - AO353_21470 0.11 -3.1 4,696,255 + AO353_21470 0.14 +0.1 4,696,255 + AO353_21470 0.14 +0.4 4,696,255 + AO353_21470 0.14 -0.9 4,696,255 + AO353_21470 0.14 +1.9 4,696,256 - AO353_21470 0.14 -1.1 4,696,256 - AO353_21470 0.14 -0.6 4,696,284 + AO353_21470 0.15 -2.0 4,696,401 + AO353_21470 0.19 +0.2
Or see this region's nucleotide sequence