Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_18230

Experiment: methylglyoxal 0.008 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_18225 and AO353_18230 are separated by 395 nucleotidesAO353_18230 and AO353_18235 are separated by 54 nucleotidesAO353_18235 and AO353_18240 overlap by 7 nucleotidesAO353_18240 and AO353_18245 are separated by 34 nucleotides AO353_18225: AO353_18225 - ATP-dependent RNA helicase HrpA, at 4,016,943 to 4,020,854 _18225 AO353_18230: AO353_18230 - 3-oxoacyl-ACP synthase, at 4,021,250 to 4,022,371 _18230 AO353_18235: AO353_18235 - RNA polymerase subunit sigma-24, at 4,022,426 to 4,023,034 _18235 AO353_18240: AO353_18240 - anti-sigma factor, at 4,023,028 to 4,023,264 _18240 AO353_18245: AO353_18245 - hypothetical protein, at 4,023,299 to 4,023,700 _18245 Position (kb) 4021 4022 4023Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4020.532 kb on - strandat 4020.532 kb on - strandat 4020.585 kb on + strandat 4020.586 kb on - strandat 4020.586 kb on - strandat 4020.586 kb on - strandat 4020.681 kb on + strandat 4020.681 kb on + strandat 4020.741 kb on + strandat 4020.742 kb on - strandat 4020.853 kb on - strandat 4020.932 kb on + strandat 4020.953 kb on - strandat 4020.953 kb on - strandat 4020.959 kb on + strandat 4021.037 kb on + strandat 4021.037 kb on + strandat 4021.037 kb on + strandat 4021.037 kb on + strandat 4021.037 kb on + strandat 4021.037 kb on + strandat 4021.037 kb on + strandat 4021.038 kb on - strandat 4021.038 kb on - strandat 4021.038 kb on - strandat 4021.038 kb on - strandat 4021.099 kb on + strandat 4021.099 kb on + strandat 4021.099 kb on + strandat 4021.101 kb on + strandat 4021.101 kb on + strandat 4021.102 kb on - strandat 4021.102 kb on - strandat 4021.102 kb on - strandat 4021.119 kb on - strandat 4021.119 kb on - strandat 4021.119 kb on - strandat 4021.193 kb on + strandat 4021.193 kb on + strandat 4021.193 kb on + strandat 4021.193 kb on + strandat 4021.193 kb on + strandat 4021.194 kb on - strandat 4021.194 kb on - strandat 4021.194 kb on - strandat 4021.203 kb on + strandat 4021.203 kb on + strandat 4021.204 kb on - strandat 4021.204 kb on - strandat 4021.204 kb on - strandat 4021.217 kb on + strandat 4021.217 kb on + strandat 4021.217 kb on + strandat 4021.217 kb on + strandat 4021.217 kb on + strandat 4021.218 kb on - strandat 4021.255 kb on + strandat 4021.255 kb on + strandat 4021.255 kb on + strandat 4021.255 kb on + strandat 4021.255 kb on + strandat 4021.255 kb on + strandat 4021.255 kb on + strandat 4021.256 kb on - strandat 4021.256 kb on - strandat 4021.256 kb on - strandat 4021.256 kb on - strandat 4021.256 kb on - strandat 4021.256 kb on - strandat 4021.256 kb on - strandat 4021.256 kb on - strandat 4021.256 kb on - strandat 4021.256 kb on - strandat 4021.256 kb on - strandat 4021.283 kb on + strandat 4021.283 kb on + strandat 4021.284 kb on - strandat 4021.284 kb on - strandat 4021.333 kb on + strandat 4021.333 kb on + strandat 4021.333 kb on + strandat 4021.333 kb on + strandat 4021.334 kb on - strandat 4021.334 kb on - strandat 4021.334 kb on - strandat 4021.334 kb on - strandat 4021.334 kb on - strandat 4021.337 kb on + strandat 4021.337 kb on + strandat 4021.337 kb on + strandat 4021.337 kb on + strandat 4021.337 kb on + strandat 4021.337 kb on + strandat 4021.337 kb on + strandat 4021.337 kb on + strandat 4021.337 kb on + strandat 4021.337 kb on + strandat 4021.338 kb on - strandat 4021.338 kb on - strandat 4021.338 kb on - strandat 4021.338 kb on - strandat 4021.338 kb on - strandat 4021.338 kb on - strandat 4021.338 kb on - strandat 4021.338 kb on - strandat 4021.338 kb on - strandat 4021.338 kb on - strandat 4021.338 kb on - strandat 4021.338 kb on - strandat 4021.338 kb on - strandat 4021.338 kb on - strandat 4021.338 kb on - strandat 4021.338 kb on - strandat 4021.338 kb on - strandat 4021.338 kb on - strandat 4021.338 kb on - strandat 4021.338 kb on - strandat 4021.471 kb on + strand, within AO353_18230at 4021.471 kb on + strand, within AO353_18230at 4021.471 kb on + strand, within AO353_18230at 4021.471 kb on + strand, within AO353_18230at 4021.471 kb on + strand, within AO353_18230at 4021.471 kb on + strand, within AO353_18230at 4021.472 kb on - strand, within AO353_18230at 4021.472 kb on - strand, within AO353_18230at 4021.472 kb on - strand, within AO353_18230at 4021.472 kb on - strand, within AO353_18230at 4021.758 kb on + strand, within AO353_18230at 4021.758 kb on + strand, within AO353_18230at 4021.758 kb on + strand, within AO353_18230at 4021.759 kb on - strand, within AO353_18230at 4021.759 kb on - strand, within AO353_18230at 4021.759 kb on - strand, within AO353_18230at 4021.759 kb on - strand, within AO353_18230at 4021.873 kb on - strand, within AO353_18230at 4021.907 kb on + strand, within AO353_18230at 4021.907 kb on + strand, within AO353_18230at 4021.907 kb on + strand, within AO353_18230at 4021.908 kb on - strand, within AO353_18230at 4022.234 kb on + strand, within AO353_18230at 4022.234 kb on + strand, within AO353_18230at 4022.234 kb on + strand, within AO353_18230at 4022.234 kb on + strand, within AO353_18230at 4022.234 kb on + strand, within AO353_18230at 4022.234 kb on + strand, within AO353_18230at 4022.234 kb on + strand, within AO353_18230at 4022.234 kb on + strand, within AO353_18230at 4022.234 kb on + strand, within AO353_18230at 4022.234 kb on + strand, within AO353_18230at 4022.234 kb on + strand, within AO353_18230at 4022.234 kb on + strand, within AO353_18230at 4022.234 kb on + strand, within AO353_18230at 4022.234 kb on + strand, within AO353_18230at 4022.235 kb on - strand, within AO353_18230at 4022.235 kb on - strand, within AO353_18230at 4022.235 kb on - strand, within AO353_18230at 4022.235 kb on - strand, within AO353_18230at 4022.235 kb on - strand, within AO353_18230at 4022.235 kb on - strand, within AO353_18230at 4022.235 kb on - strand, within AO353_18230at 4022.235 kb on - strand, within AO353_18230at 4022.235 kb on - strand, within AO353_18230at 4022.235 kb on - strand, within AO353_18230at 4022.337 kb on - strandat 4022.501 kb on + strand, within AO353_18235at 4022.501 kb on + strand, within AO353_18235at 4022.502 kb on - strand, within AO353_18235at 4022.502 kb on - strand, within AO353_18235at 4022.502 kb on - strand, within AO353_18235at 4022.502 kb on - strand, within AO353_18235at 4022.528 kb on + strand, within AO353_18235at 4022.528 kb on + strand, within AO353_18235at 4022.529 kb on - strand, within AO353_18235at 4022.529 kb on - strand, within AO353_18235at 4022.529 kb on - strand, within AO353_18235at 4022.529 kb on - strand, within AO353_18235at 4022.673 kb on - strand, within AO353_18235at 4022.848 kb on + strand, within AO353_18235at 4022.848 kb on + strand, within AO353_18235at 4022.848 kb on + strand, within AO353_18235at 4022.848 kb on + strand, within AO353_18235at 4022.848 kb on + strand, within AO353_18235at 4022.848 kb on + strand, within AO353_18235at 4022.848 kb on + strand, within AO353_18235at 4022.848 kb on + strand, within AO353_18235at 4022.848 kb on + strand, within AO353_18235at 4022.848 kb on + strand, within AO353_18235at 4022.848 kb on + strand, within AO353_18235at 4022.849 kb on - strand, within AO353_18235at 4022.849 kb on - strand, within AO353_18235at 4022.849 kb on - strand, within AO353_18235at 4022.849 kb on - strand, within AO353_18235at 4022.849 kb on - strand, within AO353_18235at 4022.849 kb on - strand, within AO353_18235at 4022.849 kb on - strand, within AO353_18235at 4022.849 kb on - strand, within AO353_18235at 4022.849 kb on - strandat 4022.849 kb on - strand, within AO353_18235at 4022.849 kb on - strandat 4022.929 kb on + strand, within AO353_18235at 4022.930 kb on - strand, within AO353_18235at 4023.039 kb on + strandat 4023.040 kb on - strandat 4023.040 kb on - strandat 4023.050 kb on + strandat 4023.050 kb on + strandat 4023.051 kb on - strandat 4023.051 kb on - strandat 4023.051 kb on - strandat 4023.067 kb on + strand, within AO353_18240at 4023.068 kb on - strand, within AO353_18240at 4023.262 kb on + strandat 4023.262 kb on + strandat 4023.262 kb on + strandat 4023.263 kb on - strandat 4023.263 kb on - strandat 4023.263 kb on - strandat 4023.263 kb on - strandat 4023.268 kb on + strandat 4023.269 kb on - strandat 4023.269 kb on - strandat 4023.285 kb on + strandat 4023.285 kb on + strandat 4023.285 kb on + strandat 4023.285 kb on + strandat 4023.285 kb on + strandat 4023.285 kb on + strandat 4023.285 kb on + strandat 4023.285 kb on + strandat 4023.285 kb on + strandat 4023.285 kb on + strandat 4023.286 kb on - strandat 4023.286 kb on - strandat 4023.286 kb on - strandat 4023.286 kb on - strandat 4023.286 kb on - strandat 4023.286 kb on - strandat 4023.286 kb on - strandat 4023.286 kb on - strandat 4023.286 kb on - strandat 4023.300 kb on + strandat 4023.300 kb on + strandat 4023.300 kb on + strandat 4023.300 kb on + strandat 4023.301 kb on - strandat 4023.301 kb on - strandat 4023.324 kb on + strandat 4023.324 kb on + strandat 4023.324 kb on + strandat 4023.324 kb on + strandat 4023.325 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction methylglyoxal 0.008 vol%
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4,020,532 - +1.4
4,020,532 - +0.3
4,020,585 + -0.9
4,020,586 - +0.1
4,020,586 - +0.1
4,020,586 - +0.6
4,020,681 + +1.3
4,020,681 + -1.5
4,020,741 + -1.5
4,020,742 - -0.5
4,020,853 - -0.7
4,020,932 + -2.8
4,020,953 - +0.8
4,020,953 - -0.7
4,020,959 + -0.4
4,021,037 + +0.2
4,021,037 + +0.4
4,021,037 + -0.3
4,021,037 + -0.5
4,021,037 + +0.1
4,021,037 + +0.8
4,021,037 + +1.2
4,021,038 - -1.7
4,021,038 - -1.9
4,021,038 - -1.0
4,021,038 - -0.2
4,021,099 + +0.1
4,021,099 + -0.4
4,021,099 + +0.9
4,021,101 + -0.6
4,021,101 + +0.6
4,021,102 - -0.5
4,021,102 - +1.0
4,021,102 - -0.1
4,021,119 - -0.2
4,021,119 - -0.1
4,021,119 - +0.6
4,021,193 + +0.5
4,021,193 + +0.4
4,021,193 + -1.2
4,021,193 + -0.4
4,021,193 + +0.3
4,021,194 - +1.1
4,021,194 - +0.4
4,021,194 - +0.1
4,021,203 + +0.6
4,021,203 + +1.1
4,021,204 - +0.4
4,021,204 - +1.3
4,021,204 - +0.6
4,021,217 + -0.9
4,021,217 + +1.4
4,021,217 + -0.4
4,021,217 + +0.2
4,021,217 + +0.4
4,021,218 - -0.3
4,021,255 + -1.8
4,021,255 + -1.4
4,021,255 + -0.9
4,021,255 + +0.4
4,021,255 + -0.4
4,021,255 + +0.3
4,021,255 + -2.9
4,021,256 - -0.8
4,021,256 - -1.4
4,021,256 - -1.2
4,021,256 - +1.6
4,021,256 - +0.6
4,021,256 - +0.7
4,021,256 - -0.7
4,021,256 - -0.9
4,021,256 - -0.4
4,021,256 - -0.3
4,021,256 - +0.1
4,021,283 + -0.1
4,021,283 + -1.4
4,021,284 - -0.5
4,021,284 - +0.8
4,021,333 + +0.3
4,021,333 + -1.3
4,021,333 + -0.5
4,021,333 + -1.2
4,021,334 - +0.1
4,021,334 - +0.3
4,021,334 - -0.0
4,021,334 - +0.6
4,021,334 - -1.7
4,021,337 + -0.8
4,021,337 + -1.7
4,021,337 + +1.0
4,021,337 + +0.3
4,021,337 + -0.2
4,021,337 + -1.5
4,021,337 + -1.5
4,021,337 + +0.5
4,021,337 + -0.2
4,021,337 + -0.9
4,021,338 - +0.5
4,021,338 - -0.8
4,021,338 - +1.1
4,021,338 - +1.2
4,021,338 - -0.3
4,021,338 - -0.4
4,021,338 - +1.6
4,021,338 - +0.8
4,021,338 - -0.6
4,021,338 - -0.9
4,021,338 - +0.9
4,021,338 - +0.8
4,021,338 - -0.9
4,021,338 - +0.3
4,021,338 - -0.9
4,021,338 - -0.9
4,021,338 - -0.9
4,021,338 - -0.4
4,021,338 - +0.3
4,021,338 - -0.4
4,021,471 + AO353_18230 0.20 +2.2
4,021,471 + AO353_18230 0.20 -2.8
4,021,471 + AO353_18230 0.20 -0.1
4,021,471 + AO353_18230 0.20 +0.7
4,021,471 + AO353_18230 0.20 +2.1
4,021,471 + AO353_18230 0.20 -0.3
4,021,472 - AO353_18230 0.20 +0.3
4,021,472 - AO353_18230 0.20 -0.2
4,021,472 - AO353_18230 0.20 +0.9
4,021,472 - AO353_18230 0.20 -1.6
4,021,758 + AO353_18230 0.45 -0.7
4,021,758 + AO353_18230 0.45 +0.4
4,021,758 + AO353_18230 0.45 -2.2
4,021,759 - AO353_18230 0.45 -0.2
4,021,759 - AO353_18230 0.45 -0.5
4,021,759 - AO353_18230 0.45 +0.1
4,021,759 - AO353_18230 0.45 -0.9
4,021,873 - AO353_18230 0.56 +0.2
4,021,907 + AO353_18230 0.59 +1.1
4,021,907 + AO353_18230 0.59 -0.7
4,021,907 + AO353_18230 0.59 -1.8
4,021,908 - AO353_18230 0.59 -0.7
4,022,234 + AO353_18230 0.88 -1.4
4,022,234 + AO353_18230 0.88 -0.8
4,022,234 + AO353_18230 0.88 -0.7
4,022,234 + AO353_18230 0.88 -1.0
4,022,234 + AO353_18230 0.88 +0.4
4,022,234 + AO353_18230 0.88 -1.7
4,022,234 + AO353_18230 0.88 -0.5
4,022,234 + AO353_18230 0.88 -1.3
4,022,234 + AO353_18230 0.88 -0.9
4,022,234 + AO353_18230 0.88 +0.1
4,022,234 + AO353_18230 0.88 -1.5
4,022,234 + AO353_18230 0.88 +0.3
4,022,234 + AO353_18230 0.88 +0.6
4,022,234 + AO353_18230 0.88 +0.3
4,022,235 - AO353_18230 0.88 -1.9
4,022,235 - AO353_18230 0.88 -0.2
4,022,235 - AO353_18230 0.88 +1.3
4,022,235 - AO353_18230 0.88 -0.2
4,022,235 - AO353_18230 0.88 +0.6
4,022,235 - AO353_18230 0.88 -0.6
4,022,235 - AO353_18230 0.88 -0.9
4,022,235 - AO353_18230 0.88 +0.9
4,022,235 - AO353_18230 0.88 +1.3
4,022,235 - AO353_18230 0.88 -0.3
4,022,337 - -1.1
4,022,501 + AO353_18235 0.12 -0.1
4,022,501 + AO353_18235 0.12 +1.4
4,022,502 - AO353_18235 0.12 +0.4
4,022,502 - AO353_18235 0.12 -0.1
4,022,502 - AO353_18235 0.12 -0.8
4,022,502 - AO353_18235 0.12 -1.0
4,022,528 + AO353_18235 0.17 +0.1
4,022,528 + AO353_18235 0.17 -1.5
4,022,529 - AO353_18235 0.17 -1.0
4,022,529 - AO353_18235 0.17 -1.8
4,022,529 - AO353_18235 0.17 +1.0
4,022,529 - AO353_18235 0.17 +1.1
4,022,673 - AO353_18235 0.41 +0.6
4,022,848 + AO353_18235 0.69 +0.8
4,022,848 + AO353_18235 0.69 +0.1
4,022,848 + AO353_18235 0.69 +2.2
4,022,848 + AO353_18235 0.69 +1.6
4,022,848 + AO353_18235 0.69 +0.6
4,022,848 + AO353_18235 0.69 +2.0
4,022,848 + AO353_18235 0.69 -0.4
4,022,848 + AO353_18235 0.69 +1.3
4,022,848 + AO353_18235 0.69 -0.9
4,022,848 + AO353_18235 0.69 -0.2
4,022,848 + AO353_18235 0.69 -0.4
4,022,849 - AO353_18235 0.69 -1.2
4,022,849 - AO353_18235 0.69 -2.1
4,022,849 - AO353_18235 0.69 +1.1
4,022,849 - AO353_18235 0.69 -0.9
4,022,849 - AO353_18235 0.69 +0.0
4,022,849 - AO353_18235 0.69 -1.1
4,022,849 - AO353_18235 0.69 +0.3
4,022,849 - AO353_18235 0.69 +0.1
4,022,849 - +0.6
4,022,849 - AO353_18235 0.69 -1.5
4,022,849 - +0.6
4,022,929 + AO353_18235 0.83 +0.6
4,022,930 - AO353_18235 0.83 -1.2
4,023,039 + -0.1
4,023,040 - -1.4
4,023,040 - +0.4
4,023,050 + +0.5
4,023,050 + +0.3
4,023,051 - +0.5
4,023,051 - +0.2
4,023,051 - +0.3
4,023,067 + AO353_18240 0.16 -0.0
4,023,068 - AO353_18240 0.17 -0.9
4,023,262 + -0.6
4,023,262 + -0.9
4,023,262 + -0.7
4,023,263 - -0.1
4,023,263 - -0.2
4,023,263 - +0.6
4,023,263 - -0.7
4,023,268 + +2.0
4,023,269 - +0.1
4,023,269 - -0.5
4,023,285 + +1.8
4,023,285 + -1.2
4,023,285 + +0.4
4,023,285 + +0.5
4,023,285 + -0.4
4,023,285 + -1.1
4,023,285 + -0.8
4,023,285 + +0.2
4,023,285 + -0.9
4,023,285 + +1.4
4,023,286 - +0.3
4,023,286 - -0.7
4,023,286 - +0.5
4,023,286 - -0.0
4,023,286 - -1.2
4,023,286 - -0.7
4,023,286 - +0.4
4,023,286 - +0.3
4,023,286 - +0.1
4,023,300 + +0.5
4,023,300 + +0.6
4,023,300 + +1.0
4,023,300 + -0.8
4,023,301 - -1.8
4,023,301 - -0.5
4,023,324 + +1.3
4,023,324 + -0.4
4,023,324 + +0.6
4,023,324 + -2.4
4,023,325 - -0.5

Or see this region's nucleotide sequence