Experiment: methylglyoxal 0.008 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_04405 and AO353_04410 are separated by 102 nucleotides AO353_04410 and AO353_04415 are separated by 99 nucleotides AO353_04415 and AO353_04420 are separated by 228 nucleotides
AO353_04405: AO353_04405 - MFS transporter, at 948,768 to 950,084
_04405
AO353_04410: AO353_04410 - phosphoribosylglycinamide formyltransferase, at 950,187 to 951,368
_04410
AO353_04415: AO353_04415 - preQ0 transporter, at 951,468 to 951,935
_04415
AO353_04420: AO353_04420 - Fe-S protein, at 952,164 to 952,379
_04420
Position (kb) 950
951
952 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 949.278 kb on - strand, within AO353_04405 at 949.404 kb on + strand, within AO353_04405 at 949.404 kb on + strand, within AO353_04405 at 949.404 kb on + strand, within AO353_04405 at 949.404 kb on + strand, within AO353_04405 at 949.405 kb on - strand, within AO353_04405 at 949.501 kb on - strand, within AO353_04405 at 949.558 kb on - strand, within AO353_04405 at 949.558 kb on - strand, within AO353_04405 at 949.558 kb on - strand, within AO353_04405 at 949.584 kb on + strand, within AO353_04405 at 949.584 kb on + strand, within AO353_04405 at 949.584 kb on + strand, within AO353_04405 at 949.585 kb on - strand, within AO353_04405 at 949.585 kb on - strand, within AO353_04405 at 949.585 kb on - strand, within AO353_04405 at 949.606 kb on - strand, within AO353_04405 at 949.606 kb on - strand, within AO353_04405 at 949.890 kb on - strand, within AO353_04405 at 949.908 kb on + strand, within AO353_04405 at 949.908 kb on + strand, within AO353_04405 at 949.908 kb on + strand, within AO353_04405 at 949.908 kb on + strand, within AO353_04405 at 949.908 kb on + strand, within AO353_04405 at 949.908 kb on + strand, within AO353_04405 at 949.908 kb on + strand, within AO353_04405 at 949.909 kb on - strand, within AO353_04405 at 949.998 kb on + strand at 949.998 kb on + strand at 949.998 kb on + strand at 949.999 kb on - strand at 949.999 kb on - strand at 949.999 kb on - strand at 950.060 kb on + strand at 950.060 kb on + strand at 950.060 kb on + strand at 950.061 kb on - strand at 950.061 kb on - strand at 950.085 kb on + strand at 950.085 kb on + strand at 950.086 kb on - strand at 950.086 kb on - strand at 950.086 kb on - strand at 950.086 kb on - strand at 950.116 kb on - strand at 950.116 kb on - strand at 950.121 kb on + strand at 950.121 kb on + strand at 950.121 kb on + strand at 950.121 kb on + strand at 950.121 kb on + strand at 950.121 kb on + strand at 950.121 kb on + strand at 950.121 kb on + strand at 950.121 kb on + strand at 950.121 kb on + strand at 950.121 kb on + strand at 950.121 kb on + strand at 950.122 kb on - strand at 950.122 kb on - strand at 950.122 kb on - strand at 950.122 kb on - strand at 950.122 kb on - strand at 950.160 kb on + strand at 950.161 kb on - strand at 950.188 kb on + strand at 950.188 kb on + strand at 950.188 kb on + strand at 950.188 kb on + strand at 950.188 kb on + strand at 950.189 kb on - strand at 950.196 kb on + strand at 950.196 kb on + strand at 950.196 kb on + strand at 950.196 kb on + strand at 950.196 kb on + strand at 950.197 kb on - strand at 950.197 kb on - strand at 950.197 kb on - strand at 950.778 kb on - strand, within AO353_04410 at 950.861 kb on + strand, within AO353_04410 at 950.961 kb on - strand, within AO353_04410 at 950.975 kb on - strand, within AO353_04410 at 951.134 kb on + strand, within AO353_04410 at 951.135 kb on - strand, within AO353_04410 at 951.324 kb on + strand at 951.446 kb on + strand at 951.446 kb on + strand at 951.446 kb on + strand at 951.447 kb on - strand at 951.447 kb on - strand at 951.447 kb on - strand at 951.605 kb on + strand, within AO353_04415 at 951.633 kb on + strand, within AO353_04415 at 951.634 kb on - strand, within AO353_04415 at 951.665 kb on + strand, within AO353_04415 at 951.665 kb on + strand, within AO353_04415 at 951.665 kb on + strand, within AO353_04415 at 951.666 kb on - strand, within AO353_04415 at 951.751 kb on + strand, within AO353_04415 at 951.751 kb on + strand, within AO353_04415 at 951.752 kb on - strand, within AO353_04415 at 951.752 kb on - strand, within AO353_04415 at 951.831 kb on + strand, within AO353_04415 at 951.831 kb on + strand, within AO353_04415 at 951.831 kb on + strand, within AO353_04415 at 951.831 kb on + strand, within AO353_04415 at 951.831 kb on + strand, within AO353_04415 at 951.832 kb on - strand, within AO353_04415 at 951.832 kb on - strand, within AO353_04415 at 951.889 kb on + strand at 951.889 kb on + strand at 951.890 kb on - strand at 951.890 kb on - strand at 951.890 kb on - strand at 951.890 kb on - strand at 951.916 kb on + strand at 951.916 kb on + strand at 951.916 kb on + strand at 951.916 kb on + strand at 951.916 kb on + strand at 951.916 kb on + strand at 951.916 kb on + strand at 951.916 kb on + strand at 951.916 kb on + strand at 951.916 kb on + strand at 951.917 kb on - strand at 951.917 kb on - strand at 951.917 kb on - strand at 951.917 kb on - strand at 951.917 kb on - strand at 951.917 kb on - strand at 951.948 kb on + strand at 951.949 kb on - strand at 951.972 kb on + strand at 951.972 kb on + strand at 951.972 kb on + strand at 951.973 kb on - strand at 951.973 kb on - strand at 951.973 kb on - strand at 952.070 kb on - strand at 952.070 kb on - strand at 952.070 kb on - strand at 952.070 kb on - strand at 952.150 kb on + strand at 952.151 kb on - strand at 952.151 kb on - strand at 952.151 kb on - strand at 952.169 kb on + strand at 952.263 kb on - strand, within AO353_04420 at 952.263 kb on - strand, within AO353_04420 at 952.313 kb on + strand, within AO353_04420 at 952.314 kb on - strand, within AO353_04420 at 952.314 kb on - strand, within AO353_04420 at 952.314 kb on - strand, within AO353_04420 at 952.356 kb on + strand, within AO353_04420 at 952.357 kb on - strand, within AO353_04420 at 952.357 kb on - strand, within AO353_04420
Per-strain Table
Position Strand Gene LocusTag Fraction methylglyoxal 0.008 vol% remove 949,278 - AO353_04405 0.39 -0.2 949,404 + AO353_04405 0.48 -1.5 949,404 + AO353_04405 0.48 -1.8 949,404 + AO353_04405 0.48 -0.3 949,404 + AO353_04405 0.48 +1.1 949,405 - AO353_04405 0.48 -0.3 949,501 - AO353_04405 0.56 +0.0 949,558 - AO353_04405 0.60 +0.0 949,558 - AO353_04405 0.60 -0.4 949,558 - AO353_04405 0.60 +0.9 949,584 + AO353_04405 0.62 +0.5 949,584 + AO353_04405 0.62 -1.0 949,584 + AO353_04405 0.62 -2.0 949,585 - AO353_04405 0.62 +0.1 949,585 - AO353_04405 0.62 -0.5 949,585 - AO353_04405 0.62 -0.3 949,606 - AO353_04405 0.64 -0.1 949,606 - AO353_04405 0.64 -1.0 949,890 - AO353_04405 0.85 -1.1 949,908 + AO353_04405 0.87 -1.3 949,908 + AO353_04405 0.87 +1.8 949,908 + AO353_04405 0.87 -0.4 949,908 + AO353_04405 0.87 +1.1 949,908 + AO353_04405 0.87 -0.8 949,908 + AO353_04405 0.87 -0.2 949,908 + AO353_04405 0.87 +1.5 949,909 - AO353_04405 0.87 -0.0 949,998 + +0.0 949,998 + +1.5 949,998 + +1.0 949,999 - -1.4 949,999 - -3.0 949,999 - -0.1 950,060 + -0.2 950,060 + -0.1 950,060 + +0.7 950,061 - +0.9 950,061 - +0.6 950,085 + -2.1 950,085 + +0.9 950,086 - -0.1 950,086 - -1.9 950,086 - +2.8 950,086 - +0.1 950,116 - -1.4 950,116 - -0.5 950,121 + -1.5 950,121 + -0.5 950,121 + -1.4 950,121 + +0.5 950,121 + -0.2 950,121 + -1.0 950,121 + +0.0 950,121 + -1.7 950,121 + -1.4 950,121 + -0.3 950,121 + +0.3 950,121 + +1.2 950,122 - -0.8 950,122 - -1.3 950,122 - +1.4 950,122 - -0.6 950,122 - -1.3 950,160 + +0.1 950,161 - -1.5 950,188 + -0.8 950,188 + +0.5 950,188 + +1.2 950,188 + +0.2 950,188 + +0.6 950,189 - +1.3 950,196 + +0.5 950,196 + -1.7 950,196 + -1.2 950,196 + +0.5 950,196 + -0.8 950,197 - -0.2 950,197 - -1.1 950,197 - -0.9 950,778 - AO353_04410 0.50 +1.4 950,861 + AO353_04410 0.57 +1.2 950,961 - AO353_04410 0.65 +0.5 950,975 - AO353_04410 0.67 -1.4 951,134 + AO353_04410 0.80 -1.9 951,135 - AO353_04410 0.80 +0.3 951,324 + -0.5 951,446 + -1.1 951,446 + +1.8 951,446 + +1.1 951,447 - +1.5 951,447 - +2.5 951,447 - -0.1 951,605 + AO353_04415 0.29 -0.1 951,633 + AO353_04415 0.35 -1.5 951,634 - AO353_04415 0.35 +0.1 951,665 + AO353_04415 0.42 -0.5 951,665 + AO353_04415 0.42 -1.4 951,665 + AO353_04415 0.42 -1.0 951,666 - AO353_04415 0.42 -0.2 951,751 + AO353_04415 0.60 -0.8 951,751 + AO353_04415 0.60 -0.3 951,752 - AO353_04415 0.61 +1.0 951,752 - AO353_04415 0.61 -0.0 951,831 + AO353_04415 0.78 +2.4 951,831 + AO353_04415 0.78 +0.6 951,831 + AO353_04415 0.78 +0.4 951,831 + AO353_04415 0.78 -0.5 951,831 + AO353_04415 0.78 -0.5 951,832 - AO353_04415 0.78 +0.8 951,832 - AO353_04415 0.78 +0.4 951,889 + +1.8 951,889 + -2.7 951,890 - +1.0 951,890 - -2.4 951,890 - +0.4 951,890 - +0.3 951,916 + +0.2 951,916 + -2.5 951,916 + -0.4 951,916 + +0.6 951,916 + +0.8 951,916 + +0.4 951,916 + +0.7 951,916 + -0.5 951,916 + +0.0 951,916 + +1.4 951,917 - +0.4 951,917 - -0.5 951,917 - +1.0 951,917 - +0.6 951,917 - +0.2 951,917 - +1.2 951,948 + -1.5 951,949 - +2.2 951,972 + -0.9 951,972 + +1.5 951,972 + +0.4 951,973 - -0.0 951,973 - -0.7 951,973 - +0.0 952,070 - +1.8 952,070 - +2.4 952,070 - +0.1 952,070 - -0.1 952,150 + +1.2 952,151 - +0.8 952,151 - +0.4 952,151 - -1.5 952,169 + +1.4 952,263 - AO353_04420 0.46 -1.4 952,263 - AO353_04420 0.46 +1.6 952,313 + AO353_04420 0.69 -1.5 952,314 - AO353_04420 0.69 -0.2 952,314 - AO353_04420 0.69 +0.1 952,314 - AO353_04420 0.69 +0.5 952,356 + AO353_04420 0.89 +2.2 952,357 - AO353_04420 0.89 -0.4 952,357 - AO353_04420 0.89 +0.1
Or see this region's nucleotide sequence