Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_02740

Experiment: methylglyoxal 0.008 vol%

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAO353_02735 and AO353_02740 are separated by 66 nucleotidesAO353_02740 and AO353_02745 are separated by 81 nucleotidesAO353_02745 and AO353_02750 overlap by 1 nucleotides AO353_02735: AO353_02735 - chemotaxis protein CheY, at 581,276 to 584,026 _02735 AO353_02740: AO353_02740 - hydroxyacid dehydrogenase, at 584,093 to 585,082 _02740 AO353_02745: AO353_02745 - hypothetical protein, at 585,164 to 585,598 _02745 AO353_02750: AO353_02750 - hypothetical protein, at 585,598 to 586,002 _02750 Position (kb) 584 585 586Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 583.236 kb on + strand, within AO353_02735at 583.236 kb on + strand, within AO353_02735at 583.236 kb on + strand, within AO353_02735at 583.237 kb on - strand, within AO353_02735at 583.237 kb on - strand, within AO353_02735at 583.237 kb on - strand, within AO353_02735at 583.281 kb on + strand, within AO353_02735at 583.281 kb on + strand, within AO353_02735at 583.281 kb on + strand, within AO353_02735at 583.282 kb on - strandat 583.282 kb on - strand, within AO353_02735at 583.282 kb on - strand, within AO353_02735at 583.282 kb on - strand, within AO353_02735at 583.282 kb on - strand, within AO353_02735at 583.320 kb on + strand, within AO353_02735at 583.320 kb on + strand, within AO353_02735at 583.320 kb on + strand, within AO353_02735at 583.320 kb on + strand, within AO353_02735at 583.321 kb on - strand, within AO353_02735at 583.353 kb on + strand, within AO353_02735at 583.353 kb on + strand, within AO353_02735at 583.353 kb on + strand, within AO353_02735at 583.353 kb on + strand, within AO353_02735at 583.353 kb on + strand, within AO353_02735at 583.354 kb on - strand, within AO353_02735at 583.354 kb on - strand, within AO353_02735at 583.441 kb on + strand, within AO353_02735at 583.441 kb on + strand, within AO353_02735at 583.441 kb on + strand, within AO353_02735at 583.441 kb on + strandat 583.442 kb on - strand, within AO353_02735at 583.442 kb on - strand, within AO353_02735at 583.442 kb on - strand, within AO353_02735at 583.442 kb on - strand, within AO353_02735at 583.442 kb on - strandat 583.442 kb on - strand, within AO353_02735at 583.442 kb on - strand, within AO353_02735at 583.442 kb on - strand, within AO353_02735at 583.442 kb on - strand, within AO353_02735at 583.442 kb on - strand, within AO353_02735at 583.580 kb on + strand, within AO353_02735at 583.580 kb on + strand, within AO353_02735at 583.580 kb on + strand, within AO353_02735at 583.580 kb on + strand, within AO353_02735at 583.580 kb on + strand, within AO353_02735at 583.580 kb on + strand, within AO353_02735at 583.581 kb on - strand, within AO353_02735at 583.581 kb on - strand, within AO353_02735at 583.581 kb on - strandat 583.679 kb on + strand, within AO353_02735at 583.680 kb on - strand, within AO353_02735at 583.680 kb on - strand, within AO353_02735at 583.704 kb on + strand, within AO353_02735at 583.704 kb on + strand, within AO353_02735at 583.705 kb on - strand, within AO353_02735at 583.884 kb on - strandat 583.884 kb on - strandat 583.884 kb on - strandat 583.884 kb on - strandat 584.098 kb on + strandat 584.098 kb on + strandat 584.099 kb on - strandat 584.099 kb on - strandat 584.099 kb on - strandat 584.123 kb on + strandat 584.123 kb on + strandat 584.123 kb on + strandat 584.123 kb on + strandat 584.123 kb on + strandat 584.123 kb on + strandat 584.123 kb on + strandat 584.123 kb on + strandat 584.123 kb on + strandat 584.123 kb on + strandat 584.123 kb on + strandat 584.124 kb on - strandat 584.124 kb on - strandat 584.124 kb on - strandat 584.124 kb on - strandat 584.124 kb on - strandat 584.124 kb on - strandat 584.124 kb on - strandat 584.124 kb on - strandat 584.124 kb on - strandat 584.124 kb on - strandat 584.271 kb on + strand, within AO353_02740at 584.271 kb on + strand, within AO353_02740at 584.272 kb on - strand, within AO353_02740at 584.307 kb on + strand, within AO353_02740at 584.391 kb on - strand, within AO353_02740at 584.609 kb on + strand, within AO353_02740at 584.609 kb on + strand, within AO353_02740at 584.610 kb on - strand, within AO353_02740at 584.870 kb on + strand, within AO353_02740at 584.870 kb on + strand, within AO353_02740at 584.871 kb on - strand, within AO353_02740at 584.871 kb on - strand, within AO353_02740at 584.871 kb on - strand, within AO353_02740at 584.871 kb on - strand, within AO353_02740at 585.136 kb on + strandat 585.136 kb on + strandat 585.136 kb on + strandat 585.136 kb on + strandat 585.141 kb on + strandat 585.150 kb on + strandat 585.150 kb on + strandat 585.151 kb on - strandat 585.151 kb on - strandat 585.151 kb on - strandat 585.185 kb on + strandat 585.186 kb on - strandat 585.597 kb on - strandat 585.597 kb on - strandat 585.685 kb on + strand, within AO353_02750at 585.685 kb on + strand, within AO353_02750at 585.685 kb on + strand, within AO353_02750at 585.685 kb on + strand, within AO353_02750at 585.685 kb on + strand, within AO353_02750at 585.685 kb on + strand, within AO353_02750at 585.685 kb on + strand, within AO353_02750at 585.685 kb on + strand, within AO353_02750at 585.685 kb on + strand, within AO353_02750at 585.685 kb on + strand, within AO353_02750at 585.685 kb on + strand, within AO353_02750at 585.685 kb on + strand, within AO353_02750at 585.685 kb on + strand, within AO353_02750at 585.685 kb on + strand, within AO353_02750at 585.685 kb on + strand, within AO353_02750at 585.685 kb on + strand, within AO353_02750at 585.686 kb on - strand, within AO353_02750at 585.686 kb on - strand, within AO353_02750at 585.686 kb on - strand, within AO353_02750at 585.686 kb on - strand, within AO353_02750at 585.686 kb on - strand, within AO353_02750at 585.686 kb on - strand, within AO353_02750at 585.686 kb on - strand, within AO353_02750at 585.686 kb on - strand, within AO353_02750at 585.686 kb on - strand, within AO353_02750at 585.686 kb on - strand, within AO353_02750at 585.686 kb on - strand, within AO353_02750at 585.724 kb on + strand, within AO353_02750at 585.725 kb on - strand, within AO353_02750at 585.725 kb on - strand, within AO353_02750at 585.725 kb on - strand, within AO353_02750at 585.767 kb on - strand, within AO353_02750at 585.767 kb on - strand, within AO353_02750at 585.803 kb on - strand, within AO353_02750at 585.915 kb on - strand, within AO353_02750at 585.915 kb on - strand, within AO353_02750at 585.915 kb on - strand, within AO353_02750at 586.000 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction methylglyoxal 0.008 vol%
remove
583,236 + AO353_02735 0.71 -1.1
583,236 + AO353_02735 0.71 -1.1
583,236 + AO353_02735 0.71 -0.1
583,237 - AO353_02735 0.71 +0.2
583,237 - AO353_02735 0.71 -1.7
583,237 - AO353_02735 0.71 -0.7
583,281 + AO353_02735 0.73 -0.2
583,281 + AO353_02735 0.73 -1.5
583,281 + AO353_02735 0.73 -1.5
583,282 - +0.7
583,282 - AO353_02735 0.73 -1.6
583,282 - AO353_02735 0.73 +0.3
583,282 - AO353_02735 0.73 -1.5
583,282 - AO353_02735 0.73 -0.9
583,320 + AO353_02735 0.74 -1.1
583,320 + AO353_02735 0.74 -0.7
583,320 + AO353_02735 0.74 -1.4
583,320 + AO353_02735 0.74 -0.9
583,321 - AO353_02735 0.74 -0.7
583,353 + AO353_02735 0.75 -0.8
583,353 + AO353_02735 0.75 -0.8
583,353 + AO353_02735 0.75 -1.3
583,353 + AO353_02735 0.75 -1.9
583,353 + AO353_02735 0.75 -2.0
583,354 - AO353_02735 0.76 -1.2
583,354 - AO353_02735 0.76 -1.6
583,441 + AO353_02735 0.79 -1.1
583,441 + AO353_02735 0.79 +0.1
583,441 + AO353_02735 0.79 -1.8
583,441 + +0.1
583,442 - AO353_02735 0.79 -0.5
583,442 - AO353_02735 0.79 -0.2
583,442 - AO353_02735 0.79 -0.9
583,442 - AO353_02735 0.79 -1.5
583,442 - -0.9
583,442 - AO353_02735 0.79 -0.7
583,442 - AO353_02735 0.79 -1.2
583,442 - AO353_02735 0.79 -0.1
583,442 - AO353_02735 0.79 +0.9
583,442 - AO353_02735 0.79 -1.2
583,580 + AO353_02735 0.84 -0.3
583,580 + AO353_02735 0.84 -1.3
583,580 + AO353_02735 0.84 -0.6
583,580 + AO353_02735 0.84 -0.5
583,580 + AO353_02735 0.84 -2.5
583,580 + AO353_02735 0.84 +0.6
583,581 - AO353_02735 0.84 -0.0
583,581 - AO353_02735 0.84 -0.3
583,581 - +1.7
583,679 + AO353_02735 0.87 +0.1
583,680 - AO353_02735 0.87 -1.6
583,680 - AO353_02735 0.87 +0.2
583,704 + AO353_02735 0.88 +0.4
583,704 + AO353_02735 0.88 -0.5
583,705 - AO353_02735 0.88 -1.8
583,884 - +1.1
583,884 - +0.3
583,884 - -1.7
583,884 - -0.8
584,098 + -0.2
584,098 + +0.4
584,099 - -0.9
584,099 - -1.3
584,099 - -0.2
584,123 + +0.7
584,123 + -0.8
584,123 + -1.8
584,123 + -1.8
584,123 + -0.3
584,123 + +0.3
584,123 + -1.1
584,123 + +1.3
584,123 + -1.0
584,123 + -0.7
584,123 + -1.8
584,124 - +1.4
584,124 - -0.8
584,124 - -1.5
584,124 - -0.5
584,124 - -0.9
584,124 - +0.7
584,124 - +1.2
584,124 - +0.2
584,124 - +0.1
584,124 - -0.5
584,271 + AO353_02740 0.18 +0.8
584,271 + AO353_02740 0.18 -2.4
584,272 - AO353_02740 0.18 -0.0
584,307 + AO353_02740 0.22 +0.4
584,391 - AO353_02740 0.30 +0.1
584,609 + AO353_02740 0.52 +0.7
584,609 + AO353_02740 0.52 +0.7
584,610 - AO353_02740 0.52 -0.2
584,870 + AO353_02740 0.78 -0.5
584,870 + AO353_02740 0.78 -0.3
584,871 - AO353_02740 0.79 +0.8
584,871 - AO353_02740 0.79 -0.3
584,871 - AO353_02740 0.79 -1.0
584,871 - AO353_02740 0.79 -0.3
585,136 + +1.1
585,136 + -0.5
585,136 + -0.3
585,136 + -1.3
585,141 + -2.0
585,150 + +0.2
585,150 + -0.5
585,151 - -0.3
585,151 - -1.0
585,151 - +0.0
585,185 + -0.5
585,186 - +0.7
585,597 - -2.9
585,597 - -1.3
585,685 + AO353_02750 0.21 -1.8
585,685 + AO353_02750 0.21 +0.7
585,685 + AO353_02750 0.21 -0.9
585,685 + AO353_02750 0.21 -0.1
585,685 + AO353_02750 0.21 +0.7
585,685 + AO353_02750 0.21 -0.7
585,685 + AO353_02750 0.21 -0.4
585,685 + AO353_02750 0.21 -0.3
585,685 + AO353_02750 0.21 +0.1
585,685 + AO353_02750 0.21 -0.7
585,685 + AO353_02750 0.21 +1.0
585,685 + AO353_02750 0.21 -1.2
585,685 + AO353_02750 0.21 +1.1
585,685 + AO353_02750 0.21 +0.2
585,685 + AO353_02750 0.21 -0.5
585,685 + AO353_02750 0.21 -0.8
585,686 - AO353_02750 0.22 +0.7
585,686 - AO353_02750 0.22 -0.9
585,686 - AO353_02750 0.22 +1.7
585,686 - AO353_02750 0.22 +0.0
585,686 - AO353_02750 0.22 -0.9
585,686 - AO353_02750 0.22 -0.1
585,686 - AO353_02750 0.22 -0.1
585,686 - AO353_02750 0.22 -1.3
585,686 - AO353_02750 0.22 -0.5
585,686 - AO353_02750 0.22 +0.2
585,686 - AO353_02750 0.22 -1.9
585,724 + AO353_02750 0.31 -0.2
585,725 - AO353_02750 0.31 +1.7
585,725 - AO353_02750 0.31 -0.7
585,725 - AO353_02750 0.31 -0.2
585,767 - AO353_02750 0.42 -0.9
585,767 - AO353_02750 0.42 +0.5
585,803 - AO353_02750 0.51 -0.1
585,915 - AO353_02750 0.78 -1.1
585,915 - AO353_02750 0.78 +1.8
585,915 - AO353_02750 0.78 +0.7
586,000 + -0.3

Or see this region's nucleotide sequence