Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_02150

Experiment: methylglyoxal 0.008 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_02140 and AO353_02145 are separated by 13 nucleotidesAO353_02145 and AO353_02150 are separated by 192 nucleotidesAO353_02150 and AO353_02155 are separated by 119 nucleotides AO353_02140: AO353_02140 - BolA family transcriptional regulator, at 459,880 to 460,179 _02140 AO353_02145: AO353_02145 - hypothetical protein, at 460,193 to 460,717 _02145 AO353_02150: AO353_02150 - fumarate hydratase, at 460,910 to 462,304 _02150 AO353_02155: AO353_02155 - hypothetical protein, at 462,424 to 463,386 _02155 Position (kb) 460 461 462 463Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 459.951 kb on + strand, within AO353_02140at 459.951 kb on + strand, within AO353_02140at 459.951 kb on + strand, within AO353_02140at 459.952 kb on - strand, within AO353_02140at 459.952 kb on - strand, within AO353_02140at 459.952 kb on - strand, within AO353_02140at 459.953 kb on + strand, within AO353_02140at 459.953 kb on + strand, within AO353_02140at 459.953 kb on + strand, within AO353_02140at 459.953 kb on + strand, within AO353_02140at 459.953 kb on + strand, within AO353_02140at 459.953 kb on + strand, within AO353_02140at 459.953 kb on + strand, within AO353_02140at 459.953 kb on + strand, within AO353_02140at 459.953 kb on + strand, within AO353_02140at 459.953 kb on + strand, within AO353_02140at 459.953 kb on + strand, within AO353_02140at 459.953 kb on + strand, within AO353_02140at 459.954 kb on - strand, within AO353_02140at 459.954 kb on - strand, within AO353_02140at 459.954 kb on - strand, within AO353_02140at 459.954 kb on - strand, within AO353_02140at 459.954 kb on - strand, within AO353_02140at 459.954 kb on - strand, within AO353_02140at 459.954 kb on - strand, within AO353_02140at 459.954 kb on - strand, within AO353_02140at 459.954 kb on - strand, within AO353_02140at 459.954 kb on - strand, within AO353_02140at 459.954 kb on - strand, within AO353_02140at 459.954 kb on - strand, within AO353_02140at 459.954 kb on - strand, within AO353_02140at 459.954 kb on - strand, within AO353_02140at 459.957 kb on + strand, within AO353_02140at 459.957 kb on + strand, within AO353_02140at 459.957 kb on + strand, within AO353_02140at 459.957 kb on + strand, within AO353_02140at 459.957 kb on + strand, within AO353_02140at 459.957 kb on + strand, within AO353_02140at 459.957 kb on + strand, within AO353_02140at 459.958 kb on - strand, within AO353_02140at 459.958 kb on - strand, within AO353_02140at 459.958 kb on - strand, within AO353_02140at 459.958 kb on - strand, within AO353_02140at 459.958 kb on - strand, within AO353_02140at 459.958 kb on - strand, within AO353_02140at 459.958 kb on - strand, within AO353_02140at 460.008 kb on - strand, within AO353_02140at 460.101 kb on + strand, within AO353_02140at 460.101 kb on + strand, within AO353_02140at 460.101 kb on + strand, within AO353_02140at 460.101 kb on + strand, within AO353_02140at 460.101 kb on + strand, within AO353_02140at 460.102 kb on - strand, within AO353_02140at 460.102 kb on - strand, within AO353_02140at 460.102 kb on - strand, within AO353_02140at 460.102 kb on - strand, within AO353_02140at 460.102 kb on - strand, within AO353_02140at 460.102 kb on - strand, within AO353_02140at 460.102 kb on - strand, within AO353_02140at 460.102 kb on - strand, within AO353_02140at 460.161 kb on + strandat 460.161 kb on + strandat 460.161 kb on + strandat 460.371 kb on + strand, within AO353_02145at 460.372 kb on - strand, within AO353_02145at 460.372 kb on - strand, within AO353_02145at 460.419 kb on + strand, within AO353_02145at 460.419 kb on + strand, within AO353_02145at 460.419 kb on + strand, within AO353_02145at 460.420 kb on - strand, within AO353_02145at 460.420 kb on - strand, within AO353_02145at 460.420 kb on - strand, within AO353_02145at 460.420 kb on - strand, within AO353_02145at 460.494 kb on + strand, within AO353_02145at 460.494 kb on + strand, within AO353_02145at 460.495 kb on - strand, within AO353_02145at 460.575 kb on + strand, within AO353_02145at 460.575 kb on + strand, within AO353_02145at 460.575 kb on + strand, within AO353_02145at 460.575 kb on + strand, within AO353_02145at 460.575 kb on + strand, within AO353_02145at 460.575 kb on + strand, within AO353_02145at 460.575 kb on + strand, within AO353_02145at 460.575 kb on + strand, within AO353_02145at 460.576 kb on - strand, within AO353_02145at 460.576 kb on - strand, within AO353_02145at 460.693 kb on + strandat 460.694 kb on - strandat 460.732 kb on + strandat 460.732 kb on + strandat 460.732 kb on + strandat 460.732 kb on + strandat 460.733 kb on - strandat 460.744 kb on + strandat 460.745 kb on - strandat 460.745 kb on - strandat 460.857 kb on + strandat 460.858 kb on - strandat 460.875 kb on + strandat 460.875 kb on + strandat 460.875 kb on + strandat 460.875 kb on + strandat 460.875 kb on + strandat 460.876 kb on - strandat 460.894 kb on + strandat 460.894 kb on + strandat 460.895 kb on - strandat 460.905 kb on - strandat 460.964 kb on + strandat 460.964 kb on + strandat 460.964 kb on + strandat 460.964 kb on + strandat 460.964 kb on + strandat 460.965 kb on - strandat 460.965 kb on - strandat 460.996 kb on + strandat 460.997 kb on - strandat 461.034 kb on + strandat 461.080 kb on + strand, within AO353_02150at 461.080 kb on + strand, within AO353_02150at 461.351 kb on - strand, within AO353_02150at 461.371 kb on - strand, within AO353_02150at 461.371 kb on - strand, within AO353_02150at 461.922 kb on + strand, within AO353_02150at 461.923 kb on - strand, within AO353_02150at 462.047 kb on - strand, within AO353_02150at 462.047 kb on - strand, within AO353_02150at 462.155 kb on + strand, within AO353_02150at 462.188 kb on + strandat 462.188 kb on + strandat 462.188 kb on + strandat 462.189 kb on - strandat 462.189 kb on - strandat 462.315 kb on + strandat 462.315 kb on + strandat 462.315 kb on + strandat 462.316 kb on - strandat 462.316 kb on - strandat 462.316 kb on - strandat 462.319 kb on + strandat 462.319 kb on + strandat 462.319 kb on + strandat 462.320 kb on - strandat 462.320 kb on - strandat 462.320 kb on - strandat 462.359 kb on + strandat 462.393 kb on + strandat 462.393 kb on + strandat 462.393 kb on + strandat 462.393 kb on + strandat 462.394 kb on - strandat 462.416 kb on + strandat 462.559 kb on + strand, within AO353_02155at 462.559 kb on + strand, within AO353_02155at 462.559 kb on + strand, within AO353_02155at 462.559 kb on + strand, within AO353_02155at 462.559 kb on + strand, within AO353_02155at 462.559 kb on + strand, within AO353_02155at 462.559 kb on + strand, within AO353_02155at 462.559 kb on + strand, within AO353_02155at 462.560 kb on - strand, within AO353_02155at 462.560 kb on - strand, within AO353_02155at 462.560 kb on - strand, within AO353_02155at 462.560 kb on - strand, within AO353_02155at 462.560 kb on - strand, within AO353_02155at 462.560 kb on - strand, within AO353_02155at 462.560 kb on - strand, within AO353_02155at 462.560 kb on - strand, within AO353_02155at 462.560 kb on - strand, within AO353_02155at 462.560 kb on - strand, within AO353_02155at 462.563 kb on + strand, within AO353_02155at 462.563 kb on + strand, within AO353_02155at 462.563 kb on + strand, within AO353_02155at 462.564 kb on - strand, within AO353_02155at 462.564 kb on - strand, within AO353_02155at 462.564 kb on - strand, within AO353_02155at 462.564 kb on - strand, within AO353_02155at 462.564 kb on - strand, within AO353_02155at 462.564 kb on - strand, within AO353_02155at 462.564 kb on - strand, within AO353_02155at 462.564 kb on - strand, within AO353_02155at 462.683 kb on + strand, within AO353_02155at 462.684 kb on - strand, within AO353_02155at 462.763 kb on + strand, within AO353_02155at 462.763 kb on + strand, within AO353_02155at 462.763 kb on + strand, within AO353_02155at 462.763 kb on + strand, within AO353_02155at 462.763 kb on + strand, within AO353_02155at 462.764 kb on - strand, within AO353_02155at 462.764 kb on - strand, within AO353_02155at 462.764 kb on - strand, within AO353_02155at 462.797 kb on + strand, within AO353_02155at 462.798 kb on - strand, within AO353_02155at 462.798 kb on - strand, within AO353_02155at 462.798 kb on - strand, within AO353_02155at 462.798 kb on - strand, within AO353_02155at 462.798 kb on - strand, within AO353_02155at 462.860 kb on + strand, within AO353_02155at 462.860 kb on + strand, within AO353_02155at 462.860 kb on + strand, within AO353_02155at 462.860 kb on + strand, within AO353_02155at 462.860 kb on + strand, within AO353_02155at 462.860 kb on + strand, within AO353_02155at 462.860 kb on + strand, within AO353_02155at 462.861 kb on - strand, within AO353_02155at 462.861 kb on - strand, within AO353_02155at 462.861 kb on - strand, within AO353_02155at 462.861 kb on - strand, within AO353_02155at 462.861 kb on - strand, within AO353_02155at 462.861 kb on - strand, within AO353_02155at 462.861 kb on - strand, within AO353_02155at 462.911 kb on + strand, within AO353_02155at 462.911 kb on + strand, within AO353_02155at 462.912 kb on - strand, within AO353_02155at 462.912 kb on - strand, within AO353_02155at 462.912 kb on - strand, within AO353_02155at 463.115 kb on + strand, within AO353_02155at 463.115 kb on + strand, within AO353_02155at 463.115 kb on + strand, within AO353_02155at 463.115 kb on + strand, within AO353_02155at 463.116 kb on - strand, within AO353_02155at 463.116 kb on - strand, within AO353_02155at 463.116 kb on - strand, within AO353_02155at 463.116 kb on - strand, within AO353_02155at 463.116 kb on - strand, within AO353_02155at 463.116 kb on - strand, within AO353_02155at 463.116 kb on - strand, within AO353_02155at 463.124 kb on + strand, within AO353_02155at 463.124 kb on + strand, within AO353_02155at 463.124 kb on + strand, within AO353_02155at 463.124 kb on + strand, within AO353_02155at 463.124 kb on + strand, within AO353_02155at 463.124 kb on + strand, within AO353_02155at 463.124 kb on + strand, within AO353_02155at 463.124 kb on + strand, within AO353_02155at 463.125 kb on - strand, within AO353_02155at 463.125 kb on - strand, within AO353_02155at 463.125 kb on - strand, within AO353_02155at 463.125 kb on - strand, within AO353_02155at 463.125 kb on - strand, within AO353_02155at 463.125 kb on - strand, within AO353_02155at 463.125 kb on - strand, within AO353_02155at 463.125 kb on - strand, within AO353_02155at 463.174 kb on - strand, within AO353_02155at 463.174 kb on - strand, within AO353_02155at 463.174 kb on - strand, within AO353_02155at 463.221 kb on - strand, within AO353_02155at 463.221 kb on - strand, within AO353_02155at 463.244 kb on - strand, within AO353_02155at 463.291 kb on + strandat 463.291 kb on + strandat 463.292 kb on - strandat 463.292 kb on - strandat 463.292 kb on - strandat 463.292 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction methylglyoxal 0.008 vol%
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459,951 + AO353_02140 0.24 -0.4
459,951 + AO353_02140 0.24 +0.7
459,951 + AO353_02140 0.24 -1.3
459,952 - AO353_02140 0.24 -1.6
459,952 - AO353_02140 0.24 +0.3
459,952 - AO353_02140 0.24 +1.2
459,953 + AO353_02140 0.24 -0.4
459,953 + AO353_02140 0.24 -0.5
459,953 + AO353_02140 0.24 -1.1
459,953 + AO353_02140 0.24 +0.0
459,953 + AO353_02140 0.24 +0.0
459,953 + AO353_02140 0.24 -0.5
459,953 + AO353_02140 0.24 -1.3
459,953 + AO353_02140 0.24 -1.2
459,953 + AO353_02140 0.24 +0.3
459,953 + AO353_02140 0.24 +2.3
459,953 + AO353_02140 0.24 -1.1
459,953 + AO353_02140 0.24 +1.0
459,954 - AO353_02140 0.25 +0.4
459,954 - AO353_02140 0.25 -0.4
459,954 - AO353_02140 0.25 +1.3
459,954 - AO353_02140 0.25 -0.1
459,954 - AO353_02140 0.25 +0.0
459,954 - AO353_02140 0.25 -1.1
459,954 - AO353_02140 0.25 -0.5
459,954 - AO353_02140 0.25 +2.8
459,954 - AO353_02140 0.25 -2.3
459,954 - AO353_02140 0.25 +0.4
459,954 - AO353_02140 0.25 -1.1
459,954 - AO353_02140 0.25 -0.7
459,954 - AO353_02140 0.25 -1.1
459,954 - AO353_02140 0.25 +0.1
459,957 + AO353_02140 0.26 -1.8
459,957 + AO353_02140 0.26 +0.4
459,957 + AO353_02140 0.26 +2.5
459,957 + AO353_02140 0.26 +0.2
459,957 + AO353_02140 0.26 +0.9
459,957 + AO353_02140 0.26 +0.9
459,957 + AO353_02140 0.26 -0.5
459,958 - AO353_02140 0.26 +1.4
459,958 - AO353_02140 0.26 +2.6
459,958 - AO353_02140 0.26 -0.9
459,958 - AO353_02140 0.26 -1.2
459,958 - AO353_02140 0.26 +0.3
459,958 - AO353_02140 0.26 -0.0
459,958 - AO353_02140 0.26 -0.1
460,008 - AO353_02140 0.43 -0.9
460,101 + AO353_02140 0.74 +0.3
460,101 + AO353_02140 0.74 +2.2
460,101 + AO353_02140 0.74 +1.2
460,101 + AO353_02140 0.74 +0.4
460,101 + AO353_02140 0.74 +1.3
460,102 - AO353_02140 0.74 -0.5
460,102 - AO353_02140 0.74 -1.7
460,102 - AO353_02140 0.74 +1.9
460,102 - AO353_02140 0.74 -0.4
460,102 - AO353_02140 0.74 -0.6
460,102 - AO353_02140 0.74 -1.0
460,102 - AO353_02140 0.74 -0.5
460,102 - AO353_02140 0.74 +2.2
460,161 + -0.8
460,161 + +1.6
460,161 + +2.8
460,371 + AO353_02145 0.34 -2.8
460,372 - AO353_02145 0.34 +0.3
460,372 - AO353_02145 0.34 -0.3
460,419 + AO353_02145 0.43 +1.3
460,419 + AO353_02145 0.43 +0.3
460,419 + AO353_02145 0.43 +0.7
460,420 - AO353_02145 0.43 -0.7
460,420 - AO353_02145 0.43 +0.0
460,420 - AO353_02145 0.43 -1.2
460,420 - AO353_02145 0.43 -1.8
460,494 + AO353_02145 0.57 -0.4
460,494 + AO353_02145 0.57 -0.4
460,495 - AO353_02145 0.58 -1.5
460,575 + AO353_02145 0.73 +1.0
460,575 + AO353_02145 0.73 +0.1
460,575 + AO353_02145 0.73 -0.3
460,575 + AO353_02145 0.73 +0.6
460,575 + AO353_02145 0.73 +0.2
460,575 + AO353_02145 0.73 -0.4
460,575 + AO353_02145 0.73 +1.4
460,575 + AO353_02145 0.73 +0.9
460,576 - AO353_02145 0.73 -0.8
460,576 - AO353_02145 0.73 +0.4
460,693 + +0.6
460,694 - -0.3
460,732 + +0.0
460,732 + +1.2
460,732 + +0.1
460,732 + -0.3
460,733 - -0.3
460,744 + -0.4
460,745 - -0.9
460,745 - +1.2
460,857 + +0.9
460,858 - +0.4
460,875 + +0.6
460,875 + +0.9
460,875 + -0.4
460,875 + +0.4
460,875 + +1.2
460,876 - +0.0
460,894 + +1.4
460,894 + +0.3
460,895 - -0.8
460,905 - +2.4
460,964 + -2.0
460,964 + -0.2
460,964 + +0.0
460,964 + -0.7
460,964 + -0.3
460,965 - -0.7
460,965 - +0.3
460,996 + +1.1
460,997 - -0.2
461,034 + +0.5
461,080 + AO353_02150 0.12 -0.8
461,080 + AO353_02150 0.12 -0.6
461,351 - AO353_02150 0.32 -0.7
461,371 - AO353_02150 0.33 -0.1
461,371 - AO353_02150 0.33 -2.3
461,922 + AO353_02150 0.73 +0.4
461,923 - AO353_02150 0.73 -0.5
462,047 - AO353_02150 0.82 -2.2
462,047 - AO353_02150 0.82 +1.1
462,155 + AO353_02150 0.89 +0.9
462,188 + -0.2
462,188 + -0.6
462,188 + +0.7
462,189 - -0.1
462,189 - -1.6
462,315 + -0.8
462,315 + -1.1
462,315 + -0.2
462,316 - -0.8
462,316 - +1.4
462,316 - +0.8
462,319 + -0.8
462,319 + +1.0
462,319 + +0.4
462,320 - +0.6
462,320 - -0.3
462,320 - -0.7
462,359 + +1.4
462,393 + +0.6
462,393 + -1.0
462,393 + -1.0
462,393 + -0.6
462,394 - +0.0
462,416 + -0.7
462,559 + AO353_02155 0.14 +0.5
462,559 + AO353_02155 0.14 +1.3
462,559 + AO353_02155 0.14 -0.1
462,559 + AO353_02155 0.14 +1.6
462,559 + AO353_02155 0.14 +0.9
462,559 + AO353_02155 0.14 +0.9
462,559 + AO353_02155 0.14 +0.0
462,559 + AO353_02155 0.14 +0.7
462,560 - AO353_02155 0.14 -1.4
462,560 - AO353_02155 0.14 -2.0
462,560 - AO353_02155 0.14 +0.5
462,560 - AO353_02155 0.14 +0.4
462,560 - AO353_02155 0.14 +1.6
462,560 - AO353_02155 0.14 -0.2
462,560 - AO353_02155 0.14 +0.0
462,560 - AO353_02155 0.14 -0.9
462,560 - AO353_02155 0.14 -0.1
462,560 - AO353_02155 0.14 -0.6
462,563 + AO353_02155 0.14 +0.7
462,563 + AO353_02155 0.14 -1.2
462,563 + AO353_02155 0.14 -1.0
462,564 - AO353_02155 0.15 -0.7
462,564 - AO353_02155 0.15 +1.5
462,564 - AO353_02155 0.15 +1.0
462,564 - AO353_02155 0.15 +0.5
462,564 - AO353_02155 0.15 -0.9
462,564 - AO353_02155 0.15 -0.4
462,564 - AO353_02155 0.15 -0.4
462,564 - AO353_02155 0.15 -0.1
462,683 + AO353_02155 0.27 -0.7
462,684 - AO353_02155 0.27 +0.2
462,763 + AO353_02155 0.35 +0.4
462,763 + AO353_02155 0.35 -0.5
462,763 + AO353_02155 0.35 -1.8
462,763 + AO353_02155 0.35 +1.8
462,763 + AO353_02155 0.35 -0.5
462,764 - AO353_02155 0.35 -0.4
462,764 - AO353_02155 0.35 -1.7
462,764 - AO353_02155 0.35 -0.6
462,797 + AO353_02155 0.39 -0.5
462,798 - AO353_02155 0.39 +0.1
462,798 - AO353_02155 0.39 +0.1
462,798 - AO353_02155 0.39 +0.0
462,798 - AO353_02155 0.39 +0.5
462,798 - AO353_02155 0.39 +0.3
462,860 + AO353_02155 0.45 +0.9
462,860 + AO353_02155 0.45 -1.1
462,860 + AO353_02155 0.45 -2.1
462,860 + AO353_02155 0.45 +0.2
462,860 + AO353_02155 0.45 -1.2
462,860 + AO353_02155 0.45 -1.2
462,860 + AO353_02155 0.45 -0.1
462,861 - AO353_02155 0.45 -0.4
462,861 - AO353_02155 0.45 +0.1
462,861 - AO353_02155 0.45 -0.0
462,861 - AO353_02155 0.45 -0.7
462,861 - AO353_02155 0.45 -0.9
462,861 - AO353_02155 0.45 -1.0
462,861 - AO353_02155 0.45 -2.2
462,911 + AO353_02155 0.51 +0.8
462,911 + AO353_02155 0.51 -2.2
462,912 - AO353_02155 0.51 +1.0
462,912 - AO353_02155 0.51 +0.3
462,912 - AO353_02155 0.51 -0.7
463,115 + AO353_02155 0.72 +1.1
463,115 + AO353_02155 0.72 +1.0
463,115 + AO353_02155 0.72 -0.7
463,115 + AO353_02155 0.72 +0.2
463,116 - AO353_02155 0.72 +0.3
463,116 - AO353_02155 0.72 +0.4
463,116 - AO353_02155 0.72 -0.0
463,116 - AO353_02155 0.72 -0.7
463,116 - AO353_02155 0.72 +0.6
463,116 - AO353_02155 0.72 -1.2
463,116 - AO353_02155 0.72 -0.1
463,124 + AO353_02155 0.73 +1.9
463,124 + AO353_02155 0.73 +2.0
463,124 + AO353_02155 0.73 -0.5
463,124 + AO353_02155 0.73 -0.5
463,124 + AO353_02155 0.73 -0.2
463,124 + AO353_02155 0.73 +0.6
463,124 + AO353_02155 0.73 -1.1
463,124 + AO353_02155 0.73 +0.4
463,125 - AO353_02155 0.73 +0.2
463,125 - AO353_02155 0.73 +0.8
463,125 - AO353_02155 0.73 +0.0
463,125 - AO353_02155 0.73 -1.3
463,125 - AO353_02155 0.73 +3.9
463,125 - AO353_02155 0.73 +0.2
463,125 - AO353_02155 0.73 -1.1
463,125 - AO353_02155 0.73 -1.8
463,174 - AO353_02155 0.78 +0.3
463,174 - AO353_02155 0.78 +0.3
463,174 - AO353_02155 0.78 -0.4
463,221 - AO353_02155 0.83 +0.4
463,221 - AO353_02155 0.83 +0.6
463,244 - AO353_02155 0.85 +0.9
463,291 + +0.2
463,291 + +0.3
463,292 - +0.4
463,292 - -1.0
463,292 - +1.2
463,292 - +0.0

Or see this region's nucleotide sequence