Experiment: methylglyoxal 0.008 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_00155 and AO353_00160 are separated by 169 nucleotides AO353_00160 and AO353_00165 are separated by 52 nucleotides AO353_00165 and AO353_00170 overlap by 4 nucleotides AO353_00170 and AO353_00175 overlap by 4 nucleotides AO353_00175 and AO353_00180 are separated by 68 nucleotides AO353_00180 and AO353_00185 overlap by 1 nucleotides AO353_00185 and AO353_00190 are separated by 6 nucleotides
AO353_00155: AO353_00155 - phage tail protein, at 31,562 to 33,547
_00155
AO353_00160: AO353_00160 - hypothetical protein, at 33,717 to 34,007
_00160
AO353_00165: AO353_00165 - lysis protein, at 34,060 to 34,527
_00165
AO353_00170: AO353_00170 - lysozyme, at 34,524 to 35,051
_00170
AO353_00175: AO353_00175 - hypothetical protein, at 35,048 to 35,302
_00175
AO353_00180: AO353_00180 - conjugal transfer protein TraR, at 35,371 to 35,580
_00180
AO353_00185: AO353_00185 - phage tail protein, at 35,580 to 36,032
_00185
AO353_00190: AO353_00190 - phage tail protein, at 36,039 to 37,154
_00190
Position (kb) 34
35
36 Strain fitness (log2 ratio) -2
-1
0
1
2 at 33.583 kb on - strand at 33.586 kb on + strand at 33.587 kb on - strand at 33.587 kb on - strand at 33.612 kb on - strand at 33.612 kb on - strand at 33.612 kb on - strand at 33.878 kb on + strand, within AO353_00160 at 33.878 kb on + strand, within AO353_00160 at 33.879 kb on - strand, within AO353_00160 at 33.879 kb on - strand, within AO353_00160 at 33.879 kb on - strand, within AO353_00160 at 33.922 kb on + strand, within AO353_00160 at 33.922 kb on + strand, within AO353_00160 at 33.922 kb on + strand, within AO353_00160 at 33.923 kb on - strand, within AO353_00160 at 33.923 kb on - strand, within AO353_00160 at 33.923 kb on - strand, within AO353_00160 at 34.013 kb on - strand at 34.030 kb on + strand at 34.031 kb on - strand at 34.031 kb on - strand at 34.142 kb on + strand, within AO353_00165 at 34.142 kb on + strand, within AO353_00165 at 34.142 kb on + strand, within AO353_00165 at 34.142 kb on + strand, within AO353_00165 at 34.143 kb on - strand, within AO353_00165 at 34.335 kb on + strand, within AO353_00165 at 34.335 kb on + strand, within AO353_00165 at 34.463 kb on + strand, within AO353_00165 at 34.463 kb on + strand, within AO353_00165 at 34.463 kb on + strand, within AO353_00165 at 34.463 kb on + strand, within AO353_00165 at 34.463 kb on + strand, within AO353_00165 at 34.464 kb on - strand, within AO353_00165 at 34.464 kb on - strand, within AO353_00165 at 34.498 kb on + strand at 34.498 kb on + strand at 34.498 kb on + strand at 34.521 kb on + strand at 34.522 kb on - strand at 34.522 kb on - strand at 34.586 kb on + strand, within AO353_00170 at 34.712 kb on + strand, within AO353_00170 at 34.861 kb on + strand, within AO353_00170 at 34.862 kb on - strand, within AO353_00170 at 34.862 kb on - strand, within AO353_00170 at 35.003 kb on + strand at 35.004 kb on - strand at 35.004 kb on - strand at 35.004 kb on - strand at 35.379 kb on + strand at 35.614 kb on + strand at 35.659 kb on + strand, within AO353_00185 at 35.849 kb on + strand, within AO353_00185 at 35.849 kb on + strand, within AO353_00185 at 35.850 kb on - strand, within AO353_00185 at 36.041 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction methylglyoxal 0.008 vol% remove 33,583 - +0.8 33,586 + -1.0 33,587 - -0.0 33,587 - +0.1 33,612 - -0.1 33,612 - +1.3 33,612 - +0.8 33,878 + AO353_00160 0.55 +2.3 33,878 + AO353_00160 0.55 +1.6 33,879 - AO353_00160 0.56 +0.4 33,879 - AO353_00160 0.56 -0.2 33,879 - AO353_00160 0.56 -0.5 33,922 + AO353_00160 0.70 -0.3 33,922 + AO353_00160 0.70 +0.2 33,922 + AO353_00160 0.70 -0.0 33,923 - AO353_00160 0.71 -0.4 33,923 - AO353_00160 0.71 -1.4 33,923 - AO353_00160 0.71 +0.5 34,013 - +0.8 34,030 + +0.3 34,031 - +0.2 34,031 - -0.2 34,142 + AO353_00165 0.18 +1.1 34,142 + AO353_00165 0.18 +1.3 34,142 + AO353_00165 0.18 -0.3 34,142 + AO353_00165 0.18 +0.2 34,143 - AO353_00165 0.18 -0.9 34,335 + AO353_00165 0.59 -1.4 34,335 + AO353_00165 0.59 +0.2 34,463 + AO353_00165 0.86 +0.5 34,463 + AO353_00165 0.86 -1.0 34,463 + AO353_00165 0.86 -0.4 34,463 + AO353_00165 0.86 -0.3 34,463 + AO353_00165 0.86 +0.5 34,464 - AO353_00165 0.86 -0.4 34,464 - AO353_00165 0.86 +0.0 34,498 + +0.4 34,498 + +0.6 34,498 + +0.8 34,521 + +1.6 34,522 - +0.5 34,522 - -0.0 34,586 + AO353_00170 0.12 -2.0 34,712 + AO353_00170 0.36 -0.8 34,861 + AO353_00170 0.64 -0.1 34,862 - AO353_00170 0.64 -1.0 34,862 - AO353_00170 0.64 -0.0 35,003 + +0.6 35,004 - +0.6 35,004 - -1.3 35,004 - -1.2 35,379 + -1.3 35,614 + +1.1 35,659 + AO353_00185 0.17 -2.3 35,849 + AO353_00185 0.59 -1.2 35,849 + AO353_00185 0.59 -1.0 35,850 - AO353_00185 0.60 +0.2 36,041 - -1.6
Or see this region's nucleotide sequence