Strain Fitness in Dyella japonica UNC79MFTsu3.2 around ABZR86_RS19150

Experiment: nitrate (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABZR86_RS19145 and ABZR86_RS19150 are separated by 567 nucleotidesABZR86_RS19150 and ABZR86_RS19155 are separated by 129 nucleotides ABZR86_RS19145: ABZR86_RS19145 - glucan ABC transporter ATP-binding protein/ permease, at 272,804 to 274,552 _RS19145 ABZR86_RS19150: ABZR86_RS19150 - TonB-dependent receptor, at 275,120 to 278,413 _RS19150 ABZR86_RS19155: ABZR86_RS19155 - heparan-alpha-glucosaminide N-acetyltransferase domain-containing protein, at 278,543 to 279,607 _RS19155 Position (kb) 275 276 277 278 279Strain fitness (log2 ratio) -3 -2 -1 0 1at 274.534 kb on - strandat 274.534 kb on - strandat 274.782 kb on + strandat 274.783 kb on - strandat 274.906 kb on + strandat 275.036 kb on + strandat 275.036 kb on + strandat 275.037 kb on - strandat 275.187 kb on - strandat 275.324 kb on + strandat 275.324 kb on + strandat 275.411 kb on + strandat 275.412 kb on - strandat 275.447 kb on - strandat 275.700 kb on - strand, within ABZR86_RS19150at 275.808 kb on - strand, within ABZR86_RS19150at 275.828 kb on + strand, within ABZR86_RS19150at 275.829 kb on - strand, within ABZR86_RS19150at 275.829 kb on - strand, within ABZR86_RS19150at 275.912 kb on + strand, within ABZR86_RS19150at 275.915 kb on + strand, within ABZR86_RS19150at 275.916 kb on - strand, within ABZR86_RS19150at 275.916 kb on - strand, within ABZR86_RS19150at 276.324 kb on - strand, within ABZR86_RS19150at 276.366 kb on - strand, within ABZR86_RS19150at 276.398 kb on + strand, within ABZR86_RS19150at 276.399 kb on - strand, within ABZR86_RS19150at 276.413 kb on + strand, within ABZR86_RS19150at 276.458 kb on + strand, within ABZR86_RS19150at 276.458 kb on + strand, within ABZR86_RS19150at 276.468 kb on - strand, within ABZR86_RS19150at 276.468 kb on - strand, within ABZR86_RS19150at 276.562 kb on - strand, within ABZR86_RS19150at 276.564 kb on - strand, within ABZR86_RS19150at 276.590 kb on + strand, within ABZR86_RS19150at 276.590 kb on + strand, within ABZR86_RS19150at 276.591 kb on - strand, within ABZR86_RS19150at 276.695 kb on + strand, within ABZR86_RS19150at 276.695 kb on + strand, within ABZR86_RS19150at 276.729 kb on - strand, within ABZR86_RS19150at 276.730 kb on + strand, within ABZR86_RS19150at 276.730 kb on + strand, within ABZR86_RS19150at 276.776 kb on + strand, within ABZR86_RS19150at 277.032 kb on - strand, within ABZR86_RS19150at 277.370 kb on + strand, within ABZR86_RS19150at 277.439 kb on - strand, within ABZR86_RS19150at 277.439 kb on - strand, within ABZR86_RS19150at 277.439 kb on - strand, within ABZR86_RS19150at 277.565 kb on + strand, within ABZR86_RS19150at 277.565 kb on + strand, within ABZR86_RS19150at 277.566 kb on - strand, within ABZR86_RS19150at 277.566 kb on - strand, within ABZR86_RS19150at 277.598 kb on + strand, within ABZR86_RS19150at 277.835 kb on + strand, within ABZR86_RS19150at 277.859 kb on + strand, within ABZR86_RS19150at 277.859 kb on + strand, within ABZR86_RS19150at 277.860 kb on - strand, within ABZR86_RS19150at 277.884 kb on - strand, within ABZR86_RS19150at 277.884 kb on - strand, within ABZR86_RS19150at 277.956 kb on - strand, within ABZR86_RS19150at 278.021 kb on + strand, within ABZR86_RS19150at 278.021 kb on + strand, within ABZR86_RS19150at 278.185 kb on + strandat 278.185 kb on + strandat 278.294 kb on + strandat 278.295 kb on - strandat 278.295 kb on - strandat 278.295 kb on - strandat 278.295 kb on - strandat 278.295 kb on - strandat 278.300 kb on + strandat 278.301 kb on - strandat 278.346 kb on - strandat 278.437 kb on - strandat 278.556 kb on + strandat 278.556 kb on + strandat 278.556 kb on + strandat 278.557 kb on - strandat 278.619 kb on + strandat 279.075 kb on + strand, within ABZR86_RS19155at 279.076 kb on - strand, within ABZR86_RS19155at 279.217 kb on - strand, within ABZR86_RS19155at 279.228 kb on - strand, within ABZR86_RS19155at 279.257 kb on - strand, within ABZR86_RS19155at 279.257 kb on - strand, within ABZR86_RS19155at 279.257 kb on - strand, within ABZR86_RS19155at 279.257 kb on - strand, within ABZR86_RS19155at 279.266 kb on + strand, within ABZR86_RS19155

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction nitrate (N)
remove
274,534 - +0.1
274,534 - +0.2
274,782 + +0.5
274,783 - -0.3
274,906 + +0.3
275,036 + -0.1
275,036 + -0.2
275,037 - +0.2
275,187 - +0.3
275,324 + +0.1
275,324 + +0.5
275,411 + +0.3
275,412 - -0.2
275,447 - -0.5
275,700 - ABZR86_RS19150 0.18 +0.4
275,808 - ABZR86_RS19150 0.21 +0.5
275,828 + ABZR86_RS19150 0.21 +0.1
275,829 - ABZR86_RS19150 0.22 -1.5
275,829 - ABZR86_RS19150 0.22 +1.0
275,912 + ABZR86_RS19150 0.24 +0.3
275,915 + ABZR86_RS19150 0.24 -0.2
275,916 - ABZR86_RS19150 0.24 +1.2
275,916 - ABZR86_RS19150 0.24 +0.2
276,324 - ABZR86_RS19150 0.37 -1.1
276,366 - ABZR86_RS19150 0.38 +1.2
276,398 + ABZR86_RS19150 0.39 -0.2
276,399 - ABZR86_RS19150 0.39 -1.4
276,413 + ABZR86_RS19150 0.39 +0.2
276,458 + ABZR86_RS19150 0.41 -0.2
276,458 + ABZR86_RS19150 0.41 +0.5
276,468 - ABZR86_RS19150 0.41 -0.7
276,468 - ABZR86_RS19150 0.41 +0.7
276,562 - ABZR86_RS19150 0.44 +0.0
276,564 - ABZR86_RS19150 0.44 -0.9
276,590 + ABZR86_RS19150 0.45 +0.2
276,590 + ABZR86_RS19150 0.45 +1.1
276,591 - ABZR86_RS19150 0.45 -0.7
276,695 + ABZR86_RS19150 0.48 +0.6
276,695 + ABZR86_RS19150 0.48 -0.5
276,729 - ABZR86_RS19150 0.49 -0.1
276,730 + ABZR86_RS19150 0.49 +0.4
276,730 + ABZR86_RS19150 0.49 -0.9
276,776 + ABZR86_RS19150 0.50 -0.3
277,032 - ABZR86_RS19150 0.58 -0.4
277,370 + ABZR86_RS19150 0.68 -0.6
277,439 - ABZR86_RS19150 0.70 +0.1
277,439 - ABZR86_RS19150 0.70 -0.1
277,439 - ABZR86_RS19150 0.70 -1.2
277,565 + ABZR86_RS19150 0.74 +0.8
277,565 + ABZR86_RS19150 0.74 +0.6
277,566 - ABZR86_RS19150 0.74 +0.3
277,566 - ABZR86_RS19150 0.74 -0.9
277,598 + ABZR86_RS19150 0.75 -0.4
277,835 + ABZR86_RS19150 0.82 +1.0
277,859 + ABZR86_RS19150 0.83 +0.8
277,859 + ABZR86_RS19150 0.83 -0.4
277,860 - ABZR86_RS19150 0.83 -0.0
277,884 - ABZR86_RS19150 0.84 +0.6
277,884 - ABZR86_RS19150 0.84 -0.8
277,956 - ABZR86_RS19150 0.86 -2.0
278,021 + ABZR86_RS19150 0.88 -0.5
278,021 + ABZR86_RS19150 0.88 +0.3
278,185 + -0.3
278,185 + +0.1
278,294 + +0.4
278,295 - -0.2
278,295 - +0.2
278,295 - -0.6
278,295 - -0.6
278,295 - -0.4
278,300 + +0.0
278,301 - +0.8
278,346 - +0.5
278,437 - -3.1
278,556 + +0.9
278,556 + -0.1
278,556 + +0.1
278,557 - -0.3
278,619 + +0.0
279,075 + ABZR86_RS19155 0.50 +0.2
279,076 - ABZR86_RS19155 0.50 +0.5
279,217 - ABZR86_RS19155 0.63 +0.0
279,228 - ABZR86_RS19155 0.64 -1.4
279,257 - ABZR86_RS19155 0.67 +0.3
279,257 - ABZR86_RS19155 0.67 -0.4
279,257 - ABZR86_RS19155 0.67 +0.1
279,257 - ABZR86_RS19155 0.67 +0.4
279,266 + ABZR86_RS19155 0.68 +0.1

Or see this region's nucleotide sequence