Strain Fitness in Dyella japonica UNC79MFTsu3.2 around ABZR86_RS18960

Experiment: nitrate (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR86_RS18955 and ABZR86_RS18960 are separated by 126 nucleotidesABZR86_RS18960 and ABZR86_RS18965 are separated by 86 nucleotides ABZR86_RS18955: ABZR86_RS18955 - phosphoenolpyruvate carboxykinase (GTP), at 224,258 to 226,033 _RS18955 ABZR86_RS18960: ABZR86_RS18960 - TetR/AcrR family transcriptional regulator, at 226,160 to 226,738 _RS18960 ABZR86_RS18965: ABZR86_RS18965 - alpha/beta hydrolase, at 226,825 to 227,703 _RS18965 Position (kb) 226 227Strain fitness (log2 ratio) -2 -1 0 1at 225.309 kb on + strand, within ABZR86_RS18955at 225.309 kb on + strand, within ABZR86_RS18955at 225.309 kb on + strand, within ABZR86_RS18955at 225.309 kb on + strand, within ABZR86_RS18955at 225.309 kb on + strand, within ABZR86_RS18955at 225.309 kb on + strand, within ABZR86_RS18955at 225.309 kb on + strand, within ABZR86_RS18955at 225.309 kb on + strand, within ABZR86_RS18955at 225.310 kb on - strand, within ABZR86_RS18955at 225.310 kb on - strand, within ABZR86_RS18955at 225.310 kb on - strand, within ABZR86_RS18955at 225.310 kb on - strand, within ABZR86_RS18955at 225.310 kb on - strand, within ABZR86_RS18955at 225.310 kb on - strand, within ABZR86_RS18955at 225.310 kb on - strand, within ABZR86_RS18955at 225.310 kb on - strand, within ABZR86_RS18955at 225.453 kb on + strand, within ABZR86_RS18955at 225.615 kb on + strand, within ABZR86_RS18955at 225.616 kb on - strand, within ABZR86_RS18955at 225.616 kb on - strand, within ABZR86_RS18955at 225.616 kb on - strand, within ABZR86_RS18955at 225.678 kb on + strand, within ABZR86_RS18955at 225.679 kb on - strand, within ABZR86_RS18955at 225.690 kb on + strand, within ABZR86_RS18955at 225.690 kb on + strand, within ABZR86_RS18955at 225.690 kb on + strand, within ABZR86_RS18955at 225.690 kb on + strand, within ABZR86_RS18955at 225.690 kb on + strand, within ABZR86_RS18955at 225.690 kb on + strand, within ABZR86_RS18955at 225.690 kb on + strand, within ABZR86_RS18955at 225.690 kb on + strand, within ABZR86_RS18955at 225.690 kb on + strand, within ABZR86_RS18955at 225.690 kb on + strand, within ABZR86_RS18955at 225.690 kb on + strand, within ABZR86_RS18955at 225.690 kb on + strand, within ABZR86_RS18955at 225.690 kb on + strand, within ABZR86_RS18955at 225.691 kb on - strand, within ABZR86_RS18955at 225.691 kb on - strand, within ABZR86_RS18955at 225.691 kb on - strand, within ABZR86_RS18955at 225.691 kb on - strand, within ABZR86_RS18955at 225.691 kb on - strand, within ABZR86_RS18955at 225.691 kb on - strand, within ABZR86_RS18955at 225.691 kb on - strand, within ABZR86_RS18955at 225.691 kb on - strand, within ABZR86_RS18955at 225.691 kb on - strand, within ABZR86_RS18955at 225.691 kb on - strand, within ABZR86_RS18955at 225.691 kb on - strand, within ABZR86_RS18955at 225.858 kb on + strandat 225.858 kb on + strandat 225.858 kb on + strandat 225.859 kb on - strandat 225.859 kb on - strandat 225.859 kb on - strandat 225.859 kb on - strandat 225.859 kb on - strandat 225.859 kb on - strandat 225.859 kb on - strandat 225.933 kb on + strandat 226.053 kb on + strandat 226.053 kb on + strandat 226.054 kb on - strandat 226.078 kb on - strandat 226.198 kb on - strandat 226.198 kb on - strandat 226.266 kb on + strand, within ABZR86_RS18960at 226.266 kb on + strand, within ABZR86_RS18960at 226.267 kb on - strand, within ABZR86_RS18960at 226.275 kb on + strand, within ABZR86_RS18960at 226.275 kb on + strand, within ABZR86_RS18960at 226.275 kb on + strand, within ABZR86_RS18960at 226.276 kb on - strand, within ABZR86_RS18960at 226.276 kb on - strand, within ABZR86_RS18960at 226.276 kb on - strand, within ABZR86_RS18960at 226.276 kb on - strand, within ABZR86_RS18960at 226.276 kb on - strand, within ABZR86_RS18960at 226.276 kb on - strand, within ABZR86_RS18960at 226.329 kb on + strand, within ABZR86_RS18960at 226.329 kb on + strand, within ABZR86_RS18960at 226.330 kb on - strand, within ABZR86_RS18960at 226.330 kb on - strand, within ABZR86_RS18960at 226.531 kb on - strand, within ABZR86_RS18960at 226.591 kb on - strand, within ABZR86_RS18960at 226.749 kb on + strandat 226.749 kb on + strandat 226.750 kb on - strandat 226.761 kb on + strandat 226.761 kb on + strandat 226.762 kb on - strandat 227.065 kb on + strand, within ABZR86_RS18965at 227.066 kb on - strand, within ABZR86_RS18965at 227.066 kb on - strand, within ABZR86_RS18965at 227.300 kb on - strand, within ABZR86_RS18965at 227.300 kb on - strand, within ABZR86_RS18965at 227.619 kb on + strandat 227.619 kb on + strandat 227.619 kb on + strandat 227.619 kb on + strandat 227.619 kb on + strandat 227.620 kb on - strandat 227.620 kb on - strandat 227.620 kb on - strandat 227.620 kb on - strandat 227.734 kb on - strandat 227.734 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction nitrate (N)
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225,309 + ABZR86_RS18955 0.59 +0.1
225,309 + ABZR86_RS18955 0.59 -0.2
225,309 + ABZR86_RS18955 0.59 +0.3
225,309 + ABZR86_RS18955 0.59 +0.2
225,309 + ABZR86_RS18955 0.59 +0.5
225,309 + ABZR86_RS18955 0.59 +0.3
225,309 + ABZR86_RS18955 0.59 +0.1
225,309 + ABZR86_RS18955 0.59 +0.5
225,310 - ABZR86_RS18955 0.59 +0.4
225,310 - ABZR86_RS18955 0.59 +0.4
225,310 - ABZR86_RS18955 0.59 -0.1
225,310 - ABZR86_RS18955 0.59 +0.2
225,310 - ABZR86_RS18955 0.59 -0.2
225,310 - ABZR86_RS18955 0.59 -0.7
225,310 - ABZR86_RS18955 0.59 +0.1
225,310 - ABZR86_RS18955 0.59 -0.6
225,453 + ABZR86_RS18955 0.67 -0.5
225,615 + ABZR86_RS18955 0.76 -0.2
225,616 - ABZR86_RS18955 0.76 -0.7
225,616 - ABZR86_RS18955 0.76 -2.3
225,616 - ABZR86_RS18955 0.76 -0.3
225,678 + ABZR86_RS18955 0.80 +0.8
225,679 - ABZR86_RS18955 0.80 -1.0
225,690 + ABZR86_RS18955 0.81 +1.2
225,690 + ABZR86_RS18955 0.81 -0.2
225,690 + ABZR86_RS18955 0.81 -0.3
225,690 + ABZR86_RS18955 0.81 +0.3
225,690 + ABZR86_RS18955 0.81 +1.3
225,690 + ABZR86_RS18955 0.81 +0.4
225,690 + ABZR86_RS18955 0.81 -0.3
225,690 + ABZR86_RS18955 0.81 +0.2
225,690 + ABZR86_RS18955 0.81 -0.1
225,690 + ABZR86_RS18955 0.81 +1.3
225,690 + ABZR86_RS18955 0.81 +1.0
225,690 + ABZR86_RS18955 0.81 +0.6
225,690 + ABZR86_RS18955 0.81 -2.5
225,691 - ABZR86_RS18955 0.81 +0.2
225,691 - ABZR86_RS18955 0.81 -0.8
225,691 - ABZR86_RS18955 0.81 -0.8
225,691 - ABZR86_RS18955 0.81 -0.6
225,691 - ABZR86_RS18955 0.81 +0.1
225,691 - ABZR86_RS18955 0.81 +0.6
225,691 - ABZR86_RS18955 0.81 -0.5
225,691 - ABZR86_RS18955 0.81 +0.4
225,691 - ABZR86_RS18955 0.81 +0.6
225,691 - ABZR86_RS18955 0.81 -0.3
225,691 - ABZR86_RS18955 0.81 -0.8
225,858 + -0.2
225,858 + +0.1
225,858 + +0.3
225,859 - -0.2
225,859 - -0.7
225,859 - -0.9
225,859 - -0.7
225,859 - +0.1
225,859 - +0.7
225,859 - -0.7
225,933 + +0.7
226,053 + -1.3
226,053 + +0.0
226,054 - +0.2
226,078 - -0.6
226,198 - -0.5
226,198 - +1.1
226,266 + ABZR86_RS18960 0.18 -0.1
226,266 + ABZR86_RS18960 0.18 +0.2
226,267 - ABZR86_RS18960 0.18 -0.7
226,275 + ABZR86_RS18960 0.20 +0.8
226,275 + ABZR86_RS18960 0.20 -1.1
226,275 + ABZR86_RS18960 0.20 -0.6
226,276 - ABZR86_RS18960 0.20 -1.7
226,276 - ABZR86_RS18960 0.20 +0.4
226,276 - ABZR86_RS18960 0.20 +0.3
226,276 - ABZR86_RS18960 0.20 -0.9
226,276 - ABZR86_RS18960 0.20 +0.4
226,276 - ABZR86_RS18960 0.20 -0.4
226,329 + ABZR86_RS18960 0.29 -0.1
226,329 + ABZR86_RS18960 0.29 +0.3
226,330 - ABZR86_RS18960 0.29 -0.6
226,330 - ABZR86_RS18960 0.29 -1.0
226,531 - ABZR86_RS18960 0.64 +0.3
226,591 - ABZR86_RS18960 0.74 -0.3
226,749 + -1.3
226,749 + +0.1
226,750 - -0.3
226,761 + -0.5
226,761 + +0.7
226,762 - +0.2
227,065 + ABZR86_RS18965 0.27 -0.1
227,066 - ABZR86_RS18965 0.27 -0.1
227,066 - ABZR86_RS18965 0.27 -1.1
227,300 - ABZR86_RS18965 0.54 -1.6
227,300 - ABZR86_RS18965 0.54 +0.3
227,619 + +0.2
227,619 + +0.8
227,619 + -1.2
227,619 + -0.4
227,619 + -0.1
227,620 - -0.8
227,620 - +0.6
227,620 - +0.1
227,620 - -0.1
227,734 - +0.4
227,734 - -0.2

Or see this region's nucleotide sequence