Strain Fitness in Dyella japonica UNC79MFTsu3.2 around ABZR86_RS18805

Experiment: nitrate (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR86_RS18800 and ABZR86_RS18805 overlap by 1 nucleotidesABZR86_RS18805 and ABZR86_RS18810 are separated by 13 nucleotides ABZR86_RS18800: ABZR86_RS18800 - glycosyltransferase family 2 protein, at 188,463 to 189,455 _RS18800 ABZR86_RS18805: ABZR86_RS18805 - hypothetical protein, at 189,455 to 189,907 _RS18805 ABZR86_RS18810: ABZR86_RS18810 - methyltransferase domain-containing protein, at 189,921 to 190,841 _RS18810 Position (kb) 189 190Strain fitness (log2 ratio) -2 -1 0 1 2at 188.474 kb on + strandat 188.474 kb on + strandat 188.474 kb on + strandat 188.474 kb on + strandat 188.475 kb on - strandat 188.475 kb on - strandat 188.475 kb on - strandat 188.475 kb on - strandat 188.475 kb on - strandat 188.475 kb on - strandat 188.475 kb on - strandat 188.475 kb on - strandat 188.475 kb on - strandat 188.475 kb on - strandat 188.518 kb on - strandat 188.706 kb on + strand, within ABZR86_RS18800at 188.706 kb on + strand, within ABZR86_RS18800at 188.707 kb on - strand, within ABZR86_RS18800at 188.824 kb on - strand, within ABZR86_RS18800at 189.046 kb on - strand, within ABZR86_RS18800at 189.046 kb on - strand, within ABZR86_RS18800at 189.046 kb on - strand, within ABZR86_RS18800at 189.046 kb on - strand, within ABZR86_RS18800at 189.046 kb on - strand, within ABZR86_RS18800at 189.099 kb on + strand, within ABZR86_RS18800at 189.099 kb on + strand, within ABZR86_RS18800at 189.162 kb on - strand, within ABZR86_RS18800at 189.162 kb on - strand, within ABZR86_RS18800at 189.189 kb on + strand, within ABZR86_RS18800at 189.189 kb on + strand, within ABZR86_RS18800at 189.190 kb on - strand, within ABZR86_RS18800at 189.190 kb on - strand, within ABZR86_RS18800at 189.190 kb on - strand, within ABZR86_RS18800at 189.390 kb on + strandat 189.390 kb on + strandat 189.390 kb on + strandat 189.391 kb on - strandat 189.391 kb on - strandat 189.391 kb on - strandat 189.427 kb on + strandat 189.427 kb on + strandat 189.428 kb on - strandat 189.428 kb on - strandat 189.551 kb on - strand, within ABZR86_RS18805at 189.735 kb on - strand, within ABZR86_RS18805at 189.838 kb on - strand, within ABZR86_RS18805at 189.936 kb on + strandat 189.936 kb on + strandat 189.936 kb on + strandat 189.936 kb on + strandat 189.937 kb on - strandat 189.937 kb on - strandat 189.937 kb on - strandat 190.036 kb on + strand, within ABZR86_RS18810at 190.037 kb on - strand, within ABZR86_RS18810at 190.037 kb on - strand, within ABZR86_RS18810at 190.037 kb on - strand, within ABZR86_RS18810at 190.087 kb on + strand, within ABZR86_RS18810at 190.087 kb on + strand, within ABZR86_RS18810at 190.087 kb on + strand, within ABZR86_RS18810at 190.087 kb on + strand, within ABZR86_RS18810at 190.088 kb on - strand, within ABZR86_RS18810at 190.088 kb on - strand, within ABZR86_RS18810at 190.088 kb on - strand, within ABZR86_RS18810at 190.088 kb on - strand, within ABZR86_RS18810at 190.088 kb on - strand, within ABZR86_RS18810at 190.219 kb on + strand, within ABZR86_RS18810at 190.229 kb on + strand, within ABZR86_RS18810at 190.256 kb on - strand, within ABZR86_RS18810at 190.279 kb on + strand, within ABZR86_RS18810at 190.279 kb on + strand, within ABZR86_RS18810at 190.279 kb on + strand, within ABZR86_RS18810at 190.280 kb on - strand, within ABZR86_RS18810at 190.280 kb on - strand, within ABZR86_RS18810at 190.280 kb on - strand, within ABZR86_RS18810at 190.444 kb on + strand, within ABZR86_RS18810at 190.445 kb on - strand, within ABZR86_RS18810at 190.445 kb on - strand, within ABZR86_RS18810at 190.543 kb on + strand, within ABZR86_RS18810at 190.594 kb on + strand, within ABZR86_RS18810at 190.594 kb on + strand, within ABZR86_RS18810at 190.595 kb on - strand, within ABZR86_RS18810at 190.595 kb on - strand, within ABZR86_RS18810at 190.673 kb on - strand, within ABZR86_RS18810at 190.684 kb on + strand, within ABZR86_RS18810at 190.684 kb on + strand, within ABZR86_RS18810at 190.723 kb on - strand, within ABZR86_RS18810at 190.738 kb on + strand, within ABZR86_RS18810at 190.738 kb on + strand, within ABZR86_RS18810at 190.739 kb on - strand, within ABZR86_RS18810at 190.739 kb on - strand, within ABZR86_RS18810at 190.739 kb on - strand, within ABZR86_RS18810at 190.739 kb on - strand, within ABZR86_RS18810at 190.739 kb on - strand, within ABZR86_RS18810at 190.765 kb on + strandat 190.765 kb on + strandat 190.765 kb on + strandat 190.765 kb on + strandat 190.766 kb on - strandat 190.766 kb on - strandat 190.768 kb on + strandat 190.768 kb on + strandat 190.769 kb on - strandat 190.775 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction nitrate (N)
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188,474 + +0.2
188,474 + +0.4
188,474 + -0.6
188,474 + -0.9
188,475 - -0.7
188,475 - -1.3
188,475 - -0.3
188,475 - -0.1
188,475 - -1.6
188,475 - +0.3
188,475 - -0.1
188,475 - +1.0
188,475 - +0.1
188,475 - -0.1
188,518 - +0.7
188,706 + ABZR86_RS18800 0.24 +0.1
188,706 + ABZR86_RS18800 0.24 +1.4
188,707 - ABZR86_RS18800 0.25 +1.2
188,824 - ABZR86_RS18800 0.36 +0.3
189,046 - ABZR86_RS18800 0.59 -0.2
189,046 - ABZR86_RS18800 0.59 +0.5
189,046 - ABZR86_RS18800 0.59 -0.1
189,046 - ABZR86_RS18800 0.59 +0.5
189,046 - ABZR86_RS18800 0.59 -1.2
189,099 + ABZR86_RS18800 0.64 -0.1
189,099 + ABZR86_RS18800 0.64 -0.8
189,162 - ABZR86_RS18800 0.70 +0.5
189,162 - ABZR86_RS18800 0.70 -0.2
189,189 + ABZR86_RS18800 0.73 +0.3
189,189 + ABZR86_RS18800 0.73 +0.5
189,190 - ABZR86_RS18800 0.73 +0.2
189,190 - ABZR86_RS18800 0.73 +0.2
189,190 - ABZR86_RS18800 0.73 -0.1
189,390 + -2.6
189,390 + -0.9
189,390 + -1.1
189,391 - +1.2
189,391 - -0.2
189,391 - -0.2
189,427 + +0.1
189,427 + -0.3
189,428 - -0.4
189,428 - +0.5
189,551 - ABZR86_RS18805 0.21 +0.3
189,735 - ABZR86_RS18805 0.62 +0.5
189,838 - ABZR86_RS18805 0.85 +0.7
189,936 + -0.4
189,936 + -0.0
189,936 + -1.7
189,936 + -0.2
189,937 - -0.2
189,937 - +0.5
189,937 - +0.6
190,036 + ABZR86_RS18810 0.12 +1.0
190,037 - ABZR86_RS18810 0.13 +0.8
190,037 - ABZR86_RS18810 0.13 +1.2
190,037 - ABZR86_RS18810 0.13 -0.5
190,087 + ABZR86_RS18810 0.18 +0.5
190,087 + ABZR86_RS18810 0.18 -0.5
190,087 + ABZR86_RS18810 0.18 +0.4
190,087 + ABZR86_RS18810 0.18 -0.6
190,088 - ABZR86_RS18810 0.18 -0.1
190,088 - ABZR86_RS18810 0.18 -1.6
190,088 - ABZR86_RS18810 0.18 +0.3
190,088 - ABZR86_RS18810 0.18 +0.0
190,088 - ABZR86_RS18810 0.18 -0.7
190,219 + ABZR86_RS18810 0.32 +0.3
190,229 + ABZR86_RS18810 0.33 +1.8
190,256 - ABZR86_RS18810 0.36 +0.3
190,279 + ABZR86_RS18810 0.39 -1.6
190,279 + ABZR86_RS18810 0.39 +0.6
190,279 + ABZR86_RS18810 0.39 -0.5
190,280 - ABZR86_RS18810 0.39 +0.0
190,280 - ABZR86_RS18810 0.39 +0.3
190,280 - ABZR86_RS18810 0.39 +0.1
190,444 + ABZR86_RS18810 0.57 +0.2
190,445 - ABZR86_RS18810 0.57 +0.0
190,445 - ABZR86_RS18810 0.57 +0.6
190,543 + ABZR86_RS18810 0.68 +1.0
190,594 + ABZR86_RS18810 0.73 -0.1
190,594 + ABZR86_RS18810 0.73 -0.1
190,595 - ABZR86_RS18810 0.73 +0.5
190,595 - ABZR86_RS18810 0.73 +0.5
190,673 - ABZR86_RS18810 0.82 +0.1
190,684 + ABZR86_RS18810 0.83 +0.5
190,684 + ABZR86_RS18810 0.83 +1.1
190,723 - ABZR86_RS18810 0.87 +0.8
190,738 + ABZR86_RS18810 0.89 -1.9
190,738 + ABZR86_RS18810 0.89 -0.3
190,739 - ABZR86_RS18810 0.89 -0.6
190,739 - ABZR86_RS18810 0.89 -0.1
190,739 - ABZR86_RS18810 0.89 +0.1
190,739 - ABZR86_RS18810 0.89 +1.0
190,739 - ABZR86_RS18810 0.89 +0.0
190,765 + +0.4
190,765 + +0.0
190,765 + -0.5
190,765 + +1.1
190,766 - -0.8
190,766 - -0.1
190,768 + +1.2
190,768 + -0.0
190,769 - +0.1
190,775 - -0.4

Or see this region's nucleotide sequence