Experiment: nitrate (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR86_RS05215 and ABZR86_RS05220 are separated by 34 nucleotides ABZR86_RS05220 and ABZR86_RS05225 are separated by 3 nucleotides ABZR86_RS05225 and ABZR86_RS05230 are separated by 50 nucleotides ABZR86_RS05230 and ABZR86_RS05235 are separated by 92 nucleotides ABZR86_RS05235 and ABZR86_RS05240 are separated by 43 nucleotides
ABZR86_RS05215: ABZR86_RS05215 - O-acetyl-ADP-ribose deacetylase, at 1,177,671 to 1,178,201
_RS05215
ABZR86_RS05220: ABZR86_RS05220 - hypothetical protein, at 1,178,236 to 1,178,544
_RS05220
ABZR86_RS05225: ABZR86_RS05225 - hypothetical protein, at 1,178,548 to 1,178,754
_RS05225
ABZR86_RS05230: ABZR86_RS05230 - TetR family transcriptional regulator, at 1,178,805 to 1,179,437
_RS05230
ABZR86_RS05235: ABZR86_RS05235 - O-methyltransferase, at 1,179,530 to 1,180,186
_RS05235
ABZR86_RS05240: ABZR86_RS05240 - hypothetical protein, at 1,180,230 to 1,180,463
_RS05240
Position (kb) 1178
1179
1180 Strain fitness (log2 ratio) -1
0
1 at 1177.837 kb on + strand, within ABZR86_RS05215 at 1177.838 kb on - strand, within ABZR86_RS05215 at 1177.838 kb on - strand, within ABZR86_RS05215 at 1177.838 kb on - strand, within ABZR86_RS05215 at 1178.212 kb on + strand at 1178.262 kb on - strand at 1178.262 kb on - strand at 1178.267 kb on - strand, within ABZR86_RS05220 at 1178.315 kb on - strand, within ABZR86_RS05220 at 1178.315 kb on - strand, within ABZR86_RS05220 at 1178.369 kb on - strand, within ABZR86_RS05220 at 1178.550 kb on - strand at 1178.584 kb on - strand, within ABZR86_RS05225 at 1178.790 kb on + strand at 1178.791 kb on - strand at 1178.792 kb on + strand at 1178.792 kb on + strand at 1178.793 kb on - strand at 1178.798 kb on + strand at 1178.799 kb on - strand at 1178.799 kb on - strand at 1178.799 kb on - strand at 1178.830 kb on + strand at 1178.830 kb on + strand at 1178.863 kb on + strand at 1178.863 kb on + strand at 1179.027 kb on + strand, within ABZR86_RS05230 at 1179.253 kb on + strand, within ABZR86_RS05230 at 1179.253 kb on + strand, within ABZR86_RS05230 at 1179.253 kb on + strand, within ABZR86_RS05230 at 1179.254 kb on - strand, within ABZR86_RS05230 at 1179.254 kb on - strand, within ABZR86_RS05230 at 1179.260 kb on - strand, within ABZR86_RS05230 at 1179.260 kb on - strand, within ABZR86_RS05230 at 1179.503 kb on + strand at 1179.542 kb on - strand at 1179.547 kb on + strand at 1179.548 kb on - strand at 1179.665 kb on + strand, within ABZR86_RS05235 at 1179.665 kb on + strand, within ABZR86_RS05235 at 1179.734 kb on + strand, within ABZR86_RS05235 at 1179.734 kb on + strand, within ABZR86_RS05235 at 1179.734 kb on + strand, within ABZR86_RS05235 at 1179.734 kb on + strand, within ABZR86_RS05235 at 1179.734 kb on + strand, within ABZR86_RS05235 at 1179.735 kb on - strand, within ABZR86_RS05235 at 1179.735 kb on - strand, within ABZR86_RS05235 at 1180.133 kb on + strand at 1180.254 kb on - strand, within ABZR86_RS05240 at 1180.348 kb on - strand, within ABZR86_RS05240 at 1180.348 kb on - strand, within ABZR86_RS05240 at 1180.348 kb on - strand, within ABZR86_RS05240
Per-strain Table
Position Strand Gene LocusTag Fraction nitrate (N) remove 1,177,837 + ABZR86_RS05215 0.31 +0.2 1,177,838 - ABZR86_RS05215 0.31 -0.1 1,177,838 - ABZR86_RS05215 0.31 -0.1 1,177,838 - ABZR86_RS05215 0.31 -1.0 1,178,212 + +0.6 1,178,262 - -0.2 1,178,262 - +0.6 1,178,267 - ABZR86_RS05220 0.10 +0.8 1,178,315 - ABZR86_RS05220 0.26 +0.7 1,178,315 - ABZR86_RS05220 0.26 -0.3 1,178,369 - ABZR86_RS05220 0.43 -0.3 1,178,550 - -0.3 1,178,584 - ABZR86_RS05225 0.17 -0.2 1,178,790 + -0.3 1,178,791 - -0.4 1,178,792 + -0.5 1,178,792 + +0.2 1,178,793 - +0.7 1,178,798 + -0.3 1,178,799 - -0.1 1,178,799 - +0.7 1,178,799 - +0.4 1,178,830 + -0.3 1,178,830 + -0.0 1,178,863 + +0.1 1,178,863 + +0.3 1,179,027 + ABZR86_RS05230 0.35 +1.6 1,179,253 + ABZR86_RS05230 0.71 -1.4 1,179,253 + ABZR86_RS05230 0.71 -0.1 1,179,253 + ABZR86_RS05230 0.71 +0.2 1,179,254 - ABZR86_RS05230 0.71 +0.5 1,179,254 - ABZR86_RS05230 0.71 +0.5 1,179,260 - ABZR86_RS05230 0.72 -0.8 1,179,260 - ABZR86_RS05230 0.72 -0.1 1,179,503 + -0.4 1,179,542 - +1.2 1,179,547 + -1.3 1,179,548 - +1.0 1,179,665 + ABZR86_RS05235 0.21 +0.5 1,179,665 + ABZR86_RS05235 0.21 +0.8 1,179,734 + ABZR86_RS05235 0.31 +0.0 1,179,734 + ABZR86_RS05235 0.31 +0.3 1,179,734 + ABZR86_RS05235 0.31 -0.5 1,179,734 + ABZR86_RS05235 0.31 -1.2 1,179,734 + ABZR86_RS05235 0.31 -0.3 1,179,735 - ABZR86_RS05235 0.31 +0.2 1,179,735 - ABZR86_RS05235 0.31 -0.4 1,180,133 + +0.4 1,180,254 - ABZR86_RS05240 0.10 -1.2 1,180,348 - ABZR86_RS05240 0.50 -0.9 1,180,348 - ABZR86_RS05240 0.50 -0.4 1,180,348 - ABZR86_RS05240 0.50 -0.1
Or see this region's nucleotide sequence