Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_R0122 and Shew_3725 are separated by 560 nucleotides Shew_3725 and Shew_3726 are separated by 134 nucleotides Shew_3726 and Shew_3727 are separated by 38 nucleotides
Shew_R0122: Shew_R0122 - 16S ribosomal RNA (RefSeq), at 4,438,044 to 4,439,600
_R0122
Shew_3725: Shew_3725 - carbonic anhydrase (RefSeq), at 4,440,161 to 4,440,718
_3725
Shew_3726: Shew_3726 - hypothetical protein (RefSeq), at 4,440,853 to 4,441,125
_3726
Shew_3727: Shew_3727 - shikimate 5-dehydrogenase (RefSeq), at 4,441,164 to 4,442,078
_3727
Position (kb) 4440
4441 Strain fitness (log2 ratio) -1
0
1 at 4440.580 kb on + strand, within Shew_3725 at 4440.580 kb on + strand, within Shew_3725 at 4441.078 kb on - strand, within Shew_3726 at 4441.220 kb on + strand at 4441.220 kb on + strand at 4441.228 kb on - strand at 4441.228 kb on - strand at 4441.245 kb on + strand at 4441.341 kb on + strand, within Shew_3727 at 4441.347 kb on + strand, within Shew_3727 at 4441.427 kb on - strand, within Shew_3727 at 4441.434 kb on + strand, within Shew_3727 at 4441.471 kb on + strand, within Shew_3727 at 4441.575 kb on - strand, within Shew_3727 at 4441.681 kb on - strand, within Shew_3727 at 4441.681 kb on - strand, within Shew_3727 at 4441.681 kb on - strand, within Shew_3727
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 4,440,580 + Shew_3725 0.75 -0.4 4,440,580 + Shew_3725 0.75 -0.8 4,441,078 - Shew_3726 0.82 +0.1 4,441,220 + -0.4 4,441,220 + +0.3 4,441,228 - -0.1 4,441,228 - -0.4 4,441,245 + -0.9 4,441,341 + Shew_3727 0.19 +0.6 4,441,347 + Shew_3727 0.20 -1.0 4,441,427 - Shew_3727 0.29 +0.1 4,441,434 + Shew_3727 0.30 -0.6 4,441,471 + Shew_3727 0.34 -0.4 4,441,575 - Shew_3727 0.45 -1.3 4,441,681 - Shew_3727 0.57 -0.1 4,441,681 - Shew_3727 0.57 -0.9 4,441,681 - Shew_3727 0.57 -0.5
Or see this region's nucleotide sequence