Strain Fitness in Shewanella loihica PV-4 around Shew_3598
Experiment: LB
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | LB |
---|---|---|---|---|---|
remove | |||||
4,294,847 | + | Shew_3597 | 0.37 | +0.2 | |
4,294,914 | - | Shew_3597 | 0.42 | +0.3 | |
4,295,120 | + | Shew_3597 | 0.58 | +0.2 | |
4,295,143 | - | Shew_3597 | 0.60 | +0.8 | |
4,295,149 | + | Shew_3597 | 0.61 | +1.1 | |
4,295,519 | - | +0.1 | |||
4,295,827 | - | +0.0 | |||
4,295,957 | + | Shew_3598 | 0.34 | -0.9 | |
4,296,416 | - | +0.6 | |||
4,296,533 | + | Shew_3599 | 0.11 | +0.4 | |
4,296,551 | - | Shew_3599 | 0.12 | +0.6 | |
4,296,619 | + | Shew_3599 | 0.16 | +1.1 | |
4,296,827 | - | Shew_3599 | 0.29 | +0.6 | |
4,296,845 | - | Shew_3599 | 0.30 | +0.5 | |
4,296,895 | + | Shew_3599 | 0.33 | +0.3 | |
4,296,971 | - | Shew_3599 | 0.37 | -0.1 | |
4,297,184 | - | Shew_3599 | 0.50 | +0.3 | |
4,297,215 | - | Shew_3599 | 0.51 | +1.0 |
Or see this region's nucleotide sequence