Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_2435 and Shew_2436 are separated by 381 nucleotides Shew_2436 and Shew_2437 are separated by 105 nucleotides Shew_2437 and Shew_2438 are separated by 74 nucleotides
Shew_2435: Shew_2435 - sodium/proline symporter (RefSeq), at 2,862,004 to 2,863,455
_2435
Shew_2436: Shew_2436 - membrane protein involved in aromatic hydrocarbon degradation (RefSeq), at 2,863,837 to 2,865,153
_2436
Shew_2437: Shew_2437 - hypothetical protein (RefSeq), at 2,865,259 to 2,865,645
_2437
Shew_2438: Shew_2438 - hypothetical protein (RefSeq), at 2,865,720 to 2,866,430
_2438
Position (kb)
2863
2864
2865
2866 Strain fitness (log2 ratio)
-2
-1
0
1 at 2863.030 kb on - strand, within Shew_2435 at 2863.634 kb on + strand at 2863.936 kb on + strand at 2863.944 kb on - strand at 2863.982 kb on + strand, within Shew_2436 at 2863.982 kb on + strand, within Shew_2436 at 2864.049 kb on + strand, within Shew_2436 at 2864.308 kb on - strand, within Shew_2436 at 2864.841 kb on + strand, within Shew_2436 at 2864.859 kb on + strand, within Shew_2436 at 2865.125 kb on + strand at 2865.125 kb on + strand at 2865.247 kb on - strand at 2865.381 kb on - strand, within Shew_2437 at 2865.642 kb on - strand at 2866.051 kb on - strand, within Shew_2438
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 2,863,030 - Shew_2435 0.71 -0.1 2,863,634 + +0.2 2,863,936 + -0.7 2,863,944 - -0.5 2,863,982 + Shew_2436 0.11 +0.2 2,863,982 + Shew_2436 0.11 -1.9 2,864,049 + Shew_2436 0.16 -0.5 2,864,308 - Shew_2436 0.36 -0.2 2,864,841 + Shew_2436 0.76 -0.6 2,864,859 + Shew_2436 0.78 -0.8 2,865,125 + -0.3 2,865,125 + -1.2 2,865,247 - +0.4 2,865,381 - Shew_2437 0.32 +0.7 2,865,642 - -0.0 2,866,051 - Shew_2438 0.47 -0.0
Or see this region's nucleotide sequence