Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_2301 and Shew_2302 are separated by 188 nucleotides Shew_2302 and Shew_2303 are separated by 87 nucleotides Shew_2303 and Shew_2304 are separated by 218 nucleotides
Shew_2301: Shew_2301 - methyl-accepting chemotaxis sensory transducer (RefSeq), at 2,695,151 to 2,697,268
_2301
Shew_2302: Shew_2302 - amidophosphoribosyltransferase (RefSeq), at 2,697,457 to 2,698,971
_2302
Shew_2303: Shew_2303 - colicin V production protein (RefSeq), at 2,699,059 to 2,699,547
_2303
Shew_2304: Shew_2304 - sporulation domain-containing protein (RefSeq), at 2,699,766 to 2,700,431
_2304
Position (kb)
2697
2698
2699 Strain fitness (log2 ratio)
-1
0
1 at 2696.933 kb on - strand, within Shew_2301 at 2696.976 kb on - strand, within Shew_2301 at 2697.378 kb on - strand at 2697.870 kb on + strand, within Shew_2302 at 2697.989 kb on + strand, within Shew_2302 at 2698.336 kb on + strand, within Shew_2302 at 2698.375 kb on + strand, within Shew_2302 at 2698.393 kb on - strand, within Shew_2302 at 2699.667 kb on + strand at 2699.675 kb on - strand at 2699.731 kb on + strand at 2699.746 kb on + strand at 2699.820 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 2,696,933 - Shew_2301 0.84 -1.3 2,696,976 - Shew_2301 0.86 +0.5 2,697,378 - -0.0 2,697,870 + Shew_2302 0.27 -0.3 2,697,989 + Shew_2302 0.35 -0.8 2,698,336 + Shew_2302 0.58 -1.4 2,698,375 + Shew_2302 0.61 -1.5 2,698,393 - Shew_2302 0.62 -0.4 2,699,667 + +0.1 2,699,675 - +0.9 2,699,731 + +0.6 2,699,746 + +0.3 2,699,820 - +1.6
Or see this region's nucleotide sequence