Strain Fitness in Shewanella loihica PV-4 around Shew_1896

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_1894 and Shew_1895 are separated by 209 nucleotidesShew_1895 and Shew_1896 overlap by 11 nucleotidesShew_1896 and Shew_1897 are separated by 160 nucleotides Shew_1894: Shew_1894 - hypothetical protein (RefSeq), at 2,187,732 to 2,189,663 _1894 Shew_1895: Shew_1895 - redoxin domain-containing protein (RefSeq), at 2,189,873 to 2,190,442 _1895 Shew_1896: Shew_1896 - putative lipoprotein (RefSeq), at 2,190,432 to 2,190,650 _1896 Shew_1897: Shew_1897 - hypothetical protein (RefSeq), at 2,190,811 to 2,192,133 _1897 Position (kb) 2190 2191Strain fitness (log2 ratio) -1 0 1at 2190.621 kb on - strand, within Shew_1896at 2190.672 kb on + strandat 2191.187 kb on + strand, within Shew_1897at 2191.534 kb on - strand, within Shew_1897at 2191.576 kb on - strand, within Shew_1897

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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2,190,621 - Shew_1896 0.86 -0.7
2,190,672 + +0.2
2,191,187 + Shew_1897 0.28 +0.1
2,191,534 - Shew_1897 0.55 -0.6
2,191,576 - Shew_1897 0.58 +1.4

Or see this region's nucleotide sequence