Strain Fitness in Shewanella loihica PV-4 around Shew_0676

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_0675 and Shew_0676 are separated by 37 nucleotidesShew_0676 and Shew_0677 are separated by 113 nucleotides Shew_0675: Shew_0675 - hypothetical protein (RefSeq), at 768,423 to 769,868 _0675 Shew_0676: Shew_0676 - putative lipoprotein (RefSeq), at 769,906 to 771,054 _0676 Shew_0677: Shew_0677 - hypothetical protein (RefSeq), at 771,168 to 772,799 _0677 Position (kb) 769 770 771 772Strain fitness (log2 ratio) -2 -1 0 1at 769.087 kb on - strand, within Shew_0675at 769.664 kb on + strand, within Shew_0675at 769.725 kb on + strandat 769.725 kb on + strandat 769.985 kb on + strandat 770.070 kb on + strand, within Shew_0676at 770.759 kb on + strand, within Shew_0676at 770.759 kb on + strand, within Shew_0676at 770.765 kb on - strand, within Shew_0676at 770.767 kb on - strand, within Shew_0676at 771.049 kb on + strandat 771.049 kb on + strandat 771.060 kb on + strandat 771.495 kb on + strand, within Shew_0677at 771.512 kb on + strand, within Shew_0677at 771.590 kb on - strand, within Shew_0677at 771.768 kb on + strand, within Shew_0677at 771.904 kb on + strand, within Shew_0677

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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769,087 - Shew_0675 0.46 +0.6
769,664 + Shew_0675 0.86 +0.6
769,725 + +0.1
769,725 + +0.0
769,985 + +1.0
770,070 + Shew_0676 0.14 -0.6
770,759 + Shew_0676 0.74 -2.6
770,759 + Shew_0676 0.74 -0.1
770,765 - Shew_0676 0.75 -0.6
770,767 - Shew_0676 0.75 -0.4
771,049 + +0.1
771,049 + -0.8
771,060 + -0.0
771,495 + Shew_0677 0.20 -0.7
771,512 + Shew_0677 0.21 -0.6
771,590 - Shew_0677 0.26 +0.1
771,768 + Shew_0677 0.37 -0.1
771,904 + Shew_0677 0.45 -0.0

Or see this region's nucleotide sequence