Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0289 and ilvM overlap by 4 nucleotides ilvM and Shew_0291 are separated by 26 nucleotides
Shew_0289: Shew_0289 - acetolactate synthase 2 catalytic subunit (RefSeq), at 308,543 to 310,216
_0289
Shew_0290: ilvM - acetolactate synthase 2 regulatory subunit (RefSeq), at 310,213 to 310,482
ilvM
Shew_0291: Shew_0291 - branched-chain amino acid aminotransferase (RefSeq), at 310,509 to 311,432
_0291
Position (kb) 310
311 Strain fitness (log2 ratio) -2
-1
0
1 at 309.262 kb on + strand, within Shew_0289 at 309.272 kb on + strand, within Shew_0289 at 309.272 kb on + strand, within Shew_0289 at 309.338 kb on + strand, within Shew_0289 at 309.346 kb on - strand, within Shew_0289 at 309.543 kb on + strand, within Shew_0289 at 309.697 kb on + strand, within Shew_0289 at 309.730 kb on + strand, within Shew_0289 at 309.763 kb on - strand, within Shew_0289 at 309.820 kb on - strand, within Shew_0289 at 310.036 kb on - strand, within Shew_0289 at 310.141 kb on + strand at 310.300 kb on - strand, within ilvM at 310.347 kb on + strand, within ilvM at 310.655 kb on + strand, within Shew_0291 at 311.098 kb on + strand, within Shew_0291 at 311.106 kb on - strand, within Shew_0291 at 311.129 kb on + strand, within Shew_0291 at 311.137 kb on - strand, within Shew_0291 at 311.137 kb on - strand, within Shew_0291 at 311.137 kb on - strand, within Shew_0291 at 311.137 kb on - strand, within Shew_0291 at 311.424 kb on - strand at 311.424 kb on - strand at 311.459 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 309,262 + Shew_0289 0.43 +0.3 309,272 + Shew_0289 0.44 -0.9 309,272 + Shew_0289 0.44 +0.1 309,338 + Shew_0289 0.47 +0.4 309,346 - Shew_0289 0.48 -0.1 309,543 + Shew_0289 0.60 -0.6 309,697 + Shew_0289 0.69 +0.1 309,730 + Shew_0289 0.71 -0.7 309,763 - Shew_0289 0.73 +0.3 309,820 - Shew_0289 0.76 -1.7 310,036 - Shew_0289 0.89 +0.6 310,141 + -0.2 310,300 - ilvM Shew_0290 0.32 -0.2 310,347 + ilvM Shew_0290 0.50 -0.7 310,655 + Shew_0291 0.16 +0.5 311,098 + Shew_0291 0.64 +0.2 311,106 - Shew_0291 0.65 -0.1 311,129 + Shew_0291 0.67 -0.1 311,137 - Shew_0291 0.68 -0.0 311,137 - Shew_0291 0.68 +0.2 311,137 - Shew_0291 0.68 +0.0 311,137 - Shew_0291 0.68 -1.9 311,424 - -0.3 311,424 - +0.8 311,459 + +0.4
Or see this region's nucleotide sequence