Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_4149

Experiment: Zinc 1.25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_4147 and Ga0059261_4148 are separated by 68 nucleotidesGa0059261_4148 and Ga0059261_4149 are separated by 174 nucleotidesGa0059261_4149 and Ga0059261_4150 are separated by 38 nucleotidesGa0059261_4150 and Ga0059261_4151 are separated by 95 nucleotides Ga0059261_4147: Ga0059261_4147 - phage shock protein A (PspA) family protein, at 4,301,179 to 4,301,847 _4147 Ga0059261_4148: Ga0059261_4148 - hypothetical protein, at 4,301,916 to 4,302,056 _4148 Ga0059261_4149: Ga0059261_4149 - psp operon transcriptional activator PspF, at 4,302,231 to 4,303,265 _4149 Ga0059261_4150: Ga0059261_4150 - Predicted permeases, at 4,303,304 to 4,304,083 _4150 Ga0059261_4151: Ga0059261_4151 - Superoxide dismutase, at 4,304,179 to 4,304,796 _4151 Position (kb) 4302 4303 4304Strain fitness (log2 ratio) -2 -1 0 1 2at 4302.052 kb on + strandat 4302.052 kb on + strandat 4302.053 kb on - strandat 4302.053 kb on - strandat 4302.053 kb on - strandat 4302.053 kb on - strandat 4302.053 kb on - strandat 4302.053 kb on - strandat 4302.053 kb on - strandat 4302.075 kb on + strandat 4302.075 kb on + strandat 4302.075 kb on + strandat 4302.075 kb on + strandat 4302.076 kb on - strandat 4302.111 kb on - strandat 4302.231 kb on - strandat 4302.239 kb on + strandat 4302.239 kb on + strandat 4302.239 kb on + strandat 4302.239 kb on + strandat 4302.240 kb on - strandat 4302.240 kb on - strandat 4302.373 kb on + strand, within Ga0059261_4149at 4302.373 kb on + strand, within Ga0059261_4149at 4302.373 kb on + strand, within Ga0059261_4149at 4302.491 kb on + strand, within Ga0059261_4149at 4302.491 kb on + strand, within Ga0059261_4149at 4302.558 kb on - strand, within Ga0059261_4149at 4302.603 kb on + strand, within Ga0059261_4149at 4302.604 kb on - strand, within Ga0059261_4149at 4302.615 kb on - strand, within Ga0059261_4149at 4302.882 kb on + strand, within Ga0059261_4149at 4302.882 kb on + strand, within Ga0059261_4149at 4302.936 kb on + strand, within Ga0059261_4149at 4302.936 kb on + strand, within Ga0059261_4149at 4302.996 kb on + strand, within Ga0059261_4149at 4303.045 kb on + strand, within Ga0059261_4149at 4303.045 kb on + strand, within Ga0059261_4149at 4303.209 kb on + strandat 4303.209 kb on + strandat 4303.209 kb on + strandat 4303.209 kb on + strandat 4303.209 kb on + strandat 4303.209 kb on + strandat 4303.210 kb on - strandat 4303.210 kb on - strandat 4303.263 kb on + strandat 4303.263 kb on + strandat 4303.263 kb on + strandat 4303.264 kb on - strandat 4303.264 kb on - strandat 4303.264 kb on - strandat 4303.264 kb on - strandat 4303.264 kb on - strandat 4303.285 kb on + strandat 4303.285 kb on + strandat 4303.285 kb on + strandat 4303.286 kb on - strandat 4303.312 kb on - strandat 4303.496 kb on + strand, within Ga0059261_4150at 4303.496 kb on + strand, within Ga0059261_4150at 4303.497 kb on - strand, within Ga0059261_4150at 4303.497 kb on - strand, within Ga0059261_4150at 4303.591 kb on + strand, within Ga0059261_4150at 4303.592 kb on - strand, within Ga0059261_4150at 4303.592 kb on - strand, within Ga0059261_4150at 4303.592 kb on - strand, within Ga0059261_4150at 4303.649 kb on + strand, within Ga0059261_4150at 4303.649 kb on + strand, within Ga0059261_4150at 4303.649 kb on + strand, within Ga0059261_4150at 4303.649 kb on + strand, within Ga0059261_4150at 4303.649 kb on + strand, within Ga0059261_4150at 4303.649 kb on + strand, within Ga0059261_4150at 4303.649 kb on + strand, within Ga0059261_4150at 4303.649 kb on + strand, within Ga0059261_4150at 4303.649 kb on + strand, within Ga0059261_4150at 4303.649 kb on + strand, within Ga0059261_4150at 4303.649 kb on + strand, within Ga0059261_4150at 4303.650 kb on - strand, within Ga0059261_4150at 4303.650 kb on - strand, within Ga0059261_4150at 4303.650 kb on - strand, within Ga0059261_4150at 4303.650 kb on - strand, within Ga0059261_4150at 4303.650 kb on - strand, within Ga0059261_4150at 4303.650 kb on - strand, within Ga0059261_4150at 4303.742 kb on + strand, within Ga0059261_4150at 4303.742 kb on + strand, within Ga0059261_4150at 4303.742 kb on + strand, within Ga0059261_4150at 4303.742 kb on + strand, within Ga0059261_4150at 4303.742 kb on + strand, within Ga0059261_4150at 4303.742 kb on + strand, within Ga0059261_4150at 4303.742 kb on + strand, within Ga0059261_4150at 4303.743 kb on - strand, within Ga0059261_4150at 4303.743 kb on - strand, within Ga0059261_4150at 4303.743 kb on - strand, within Ga0059261_4150at 4303.743 kb on - strand, within Ga0059261_4150at 4303.976 kb on + strandat 4304.143 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Zinc 1.25 mM
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4,302,052 + +0.5
4,302,052 + -2.1
4,302,053 - +0.1
4,302,053 - -0.2
4,302,053 - -0.1
4,302,053 - +0.1
4,302,053 - -0.3
4,302,053 - -0.6
4,302,053 - -0.3
4,302,075 + -1.5
4,302,075 + -1.9
4,302,075 + -1.2
4,302,075 + -1.2
4,302,076 - -0.5
4,302,111 - -0.9
4,302,231 - +0.3
4,302,239 + +0.0
4,302,239 + -0.1
4,302,239 + -1.5
4,302,239 + +0.0
4,302,240 - -0.5
4,302,240 - +0.2
4,302,373 + Ga0059261_4149 0.14 +0.7
4,302,373 + Ga0059261_4149 0.14 +0.5
4,302,373 + Ga0059261_4149 0.14 +0.3
4,302,491 + Ga0059261_4149 0.25 -0.3
4,302,491 + Ga0059261_4149 0.25 -0.2
4,302,558 - Ga0059261_4149 0.32 +2.1
4,302,603 + Ga0059261_4149 0.36 -0.3
4,302,604 - Ga0059261_4149 0.36 -0.2
4,302,615 - Ga0059261_4149 0.37 +0.1
4,302,882 + Ga0059261_4149 0.63 +0.1
4,302,882 + Ga0059261_4149 0.63 +0.8
4,302,936 + Ga0059261_4149 0.68 +1.5
4,302,936 + Ga0059261_4149 0.68 -0.8
4,302,996 + Ga0059261_4149 0.74 +0.5
4,303,045 + Ga0059261_4149 0.79 -0.3
4,303,045 + Ga0059261_4149 0.79 +0.2
4,303,209 + -1.3
4,303,209 + -0.1
4,303,209 + -1.2
4,303,209 + +0.0
4,303,209 + -0.3
4,303,209 + +1.1
4,303,210 - -0.1
4,303,210 - -0.3
4,303,263 + -0.1
4,303,263 + -0.8
4,303,263 + +0.8
4,303,264 - -0.1
4,303,264 - -0.4
4,303,264 - -0.0
4,303,264 - +0.2
4,303,264 - +0.3
4,303,285 + +0.4
4,303,285 + +0.1
4,303,285 + +1.5
4,303,286 - -0.4
4,303,312 - -0.4
4,303,496 + Ga0059261_4150 0.25 -0.4
4,303,496 + Ga0059261_4150 0.25 -0.1
4,303,497 - Ga0059261_4150 0.25 +0.3
4,303,497 - Ga0059261_4150 0.25 -0.5
4,303,591 + Ga0059261_4150 0.37 -0.3
4,303,592 - Ga0059261_4150 0.37 -0.1
4,303,592 - Ga0059261_4150 0.37 -0.2
4,303,592 - Ga0059261_4150 0.37 -0.2
4,303,649 + Ga0059261_4150 0.44 -0.1
4,303,649 + Ga0059261_4150 0.44 +0.4
4,303,649 + Ga0059261_4150 0.44 -0.1
4,303,649 + Ga0059261_4150 0.44 -0.5
4,303,649 + Ga0059261_4150 0.44 -0.8
4,303,649 + Ga0059261_4150 0.44 +0.2
4,303,649 + Ga0059261_4150 0.44 +0.1
4,303,649 + Ga0059261_4150 0.44 -0.9
4,303,649 + Ga0059261_4150 0.44 +0.4
4,303,649 + Ga0059261_4150 0.44 +0.5
4,303,649 + Ga0059261_4150 0.44 +1.2
4,303,650 - Ga0059261_4150 0.44 +1.1
4,303,650 - Ga0059261_4150 0.44 +0.3
4,303,650 - Ga0059261_4150 0.44 -0.1
4,303,650 - Ga0059261_4150 0.44 -0.1
4,303,650 - Ga0059261_4150 0.44 +0.2
4,303,650 - Ga0059261_4150 0.44 +0.1
4,303,742 + Ga0059261_4150 0.56 +0.4
4,303,742 + Ga0059261_4150 0.56 -0.1
4,303,742 + Ga0059261_4150 0.56 -1.1
4,303,742 + Ga0059261_4150 0.56 -0.3
4,303,742 + Ga0059261_4150 0.56 -0.3
4,303,742 + Ga0059261_4150 0.56 +0.8
4,303,742 + Ga0059261_4150 0.56 -0.1
4,303,743 - Ga0059261_4150 0.56 -0.1
4,303,743 - Ga0059261_4150 0.56 +0.4
4,303,743 - Ga0059261_4150 0.56 +0.2
4,303,743 - Ga0059261_4150 0.56 -0.9
4,303,976 + +0.5
4,304,143 + -0.6

Or see this region's nucleotide sequence