Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_4118

Experiment: Zinc 1.25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_4117 and Ga0059261_4118 are separated by 3 nucleotidesGa0059261_4118 and Ga0059261_4119 are separated by 13 nucleotidesGa0059261_4119 and Ga0059261_4120 overlap by 1 nucleotides Ga0059261_4117: Ga0059261_4117 - hypothetical protein, at 4,273,955 to 4,275,175 _4117 Ga0059261_4118: Ga0059261_4118 - Glycerophosphoryl diester phosphodiesterase, at 4,275,179 to 4,276,756 _4118 Ga0059261_4119: Ga0059261_4119 - Uracil-DNA glycosylase (EC 3.2.2.-), at 4,276,770 to 4,277,630 _4119 Ga0059261_4120: Ga0059261_4120 - Stress responsive A/B Barrel Domain, at 4,277,630 to 4,277,965 _4120 Position (kb) 4275 4276 4277Strain fitness (log2 ratio) -1 0 1at 4274.332 kb on + strand, within Ga0059261_4117at 4274.332 kb on + strand, within Ga0059261_4117at 4274.332 kb on + strand, within Ga0059261_4117at 4274.332 kb on + strand, within Ga0059261_4117at 4274.333 kb on - strand, within Ga0059261_4117at 4274.333 kb on - strand, within Ga0059261_4117at 4274.333 kb on - strand, within Ga0059261_4117at 4274.333 kb on - strand, within Ga0059261_4117at 4274.373 kb on + strand, within Ga0059261_4117at 4274.373 kb on + strand, within Ga0059261_4117at 4274.373 kb on + strand, within Ga0059261_4117at 4274.373 kb on + strand, within Ga0059261_4117at 4274.374 kb on - strand, within Ga0059261_4117at 4274.374 kb on - strand, within Ga0059261_4117at 4274.374 kb on - strand, within Ga0059261_4117at 4274.374 kb on - strandat 4274.374 kb on - strand, within Ga0059261_4117at 4274.488 kb on - strand, within Ga0059261_4117at 4274.805 kb on + strand, within Ga0059261_4117at 4274.805 kb on + strand, within Ga0059261_4117at 4274.805 kb on + strandat 4274.805 kb on + strand, within Ga0059261_4117at 4274.806 kb on - strand, within Ga0059261_4117at 4274.862 kb on + strand, within Ga0059261_4117at 4274.862 kb on + strand, within Ga0059261_4117at 4274.862 kb on + strand, within Ga0059261_4117at 4274.862 kb on + strand, within Ga0059261_4117at 4274.862 kb on + strand, within Ga0059261_4117at 4274.863 kb on - strand, within Ga0059261_4117at 4274.886 kb on + strand, within Ga0059261_4117at 4274.886 kb on + strand, within Ga0059261_4117at 4275.180 kb on + strandat 4275.181 kb on - strandat 4275.256 kb on - strandat 4275.408 kb on + strand, within Ga0059261_4118at 4275.408 kb on + strand, within Ga0059261_4118at 4275.411 kb on + strand, within Ga0059261_4118at 4275.411 kb on + strand, within Ga0059261_4118at 4275.411 kb on + strand, within Ga0059261_4118at 4275.411 kb on + strand, within Ga0059261_4118at 4275.412 kb on - strand, within Ga0059261_4118at 4275.492 kb on + strand, within Ga0059261_4118at 4275.507 kb on + strand, within Ga0059261_4118at 4275.507 kb on + strand, within Ga0059261_4118at 4275.570 kb on + strand, within Ga0059261_4118at 4275.570 kb on + strand, within Ga0059261_4118at 4275.571 kb on - strand, within Ga0059261_4118at 4275.571 kb on - strand, within Ga0059261_4118at 4275.571 kb on - strand, within Ga0059261_4118at 4275.594 kb on + strand, within Ga0059261_4118at 4275.594 kb on + strand, within Ga0059261_4118at 4275.594 kb on + strand, within Ga0059261_4118at 4275.594 kb on + strand, within Ga0059261_4118at 4275.595 kb on - strand, within Ga0059261_4118at 4275.771 kb on + strand, within Ga0059261_4118at 4275.771 kb on + strand, within Ga0059261_4118at 4275.771 kb on + strand, within Ga0059261_4118at 4275.771 kb on + strand, within Ga0059261_4118at 4275.772 kb on - strand, within Ga0059261_4118at 4275.772 kb on - strand, within Ga0059261_4118at 4275.772 kb on - strand, within Ga0059261_4118at 4275.870 kb on + strand, within Ga0059261_4118at 4275.870 kb on + strand, within Ga0059261_4118at 4275.870 kb on + strand, within Ga0059261_4118at 4275.870 kb on + strand, within Ga0059261_4118at 4275.871 kb on - strand, within Ga0059261_4118at 4275.937 kb on - strand, within Ga0059261_4118at 4275.999 kb on + strand, within Ga0059261_4118at 4275.999 kb on + strand, within Ga0059261_4118at 4276.000 kb on - strand, within Ga0059261_4118at 4276.000 kb on - strand, within Ga0059261_4118at 4276.253 kb on - strand, within Ga0059261_4118at 4276.410 kb on - strand, within Ga0059261_4118at 4276.410 kb on - strand, within Ga0059261_4118at 4276.494 kb on + strand, within Ga0059261_4118at 4276.494 kb on + strand, within Ga0059261_4118at 4276.494 kb on + strand, within Ga0059261_4118at 4276.495 kb on - strand, within Ga0059261_4118at 4276.495 kb on - strand, within Ga0059261_4118at 4276.681 kb on + strandat 4276.683 kb on + strandat 4276.684 kb on - strandat 4276.846 kb on + strandat 4276.865 kb on + strand, within Ga0059261_4119at 4276.865 kb on + strand, within Ga0059261_4119at 4277.054 kb on + strand, within Ga0059261_4119at 4277.152 kb on + strand, within Ga0059261_4119at 4277.153 kb on - strand, within Ga0059261_4119at 4277.248 kb on + strand, within Ga0059261_4119at 4277.249 kb on - strand, within Ga0059261_4119at 4277.249 kb on - strand, within Ga0059261_4119at 4277.365 kb on + strand, within Ga0059261_4119at 4277.366 kb on - strand, within Ga0059261_4119at 4277.432 kb on + strand, within Ga0059261_4119at 4277.432 kb on + strand, within Ga0059261_4119at 4277.432 kb on + strand, within Ga0059261_4119at 4277.433 kb on - strand, within Ga0059261_4119at 4277.433 kb on - strand, within Ga0059261_4119at 4277.433 kb on - strand, within Ga0059261_4119at 4277.503 kb on + strand, within Ga0059261_4119at 4277.503 kb on + strand, within Ga0059261_4119at 4277.503 kb on + strand, within Ga0059261_4119at 4277.504 kb on - strand, within Ga0059261_4119at 4277.504 kb on - strand, within Ga0059261_4119at 4277.504 kb on - strand, within Ga0059261_4119at 4277.504 kb on - strand, within Ga0059261_4119at 4277.599 kb on + strandat 4277.599 kb on + strandat 4277.599 kb on + strandat 4277.599 kb on + strandat 4277.600 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Zinc 1.25 mM
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4,274,332 + Ga0059261_4117 0.31 +0.4
4,274,332 + Ga0059261_4117 0.31 -0.3
4,274,332 + Ga0059261_4117 0.31 -1.1
4,274,332 + Ga0059261_4117 0.31 +0.7
4,274,333 - Ga0059261_4117 0.31 +0.4
4,274,333 - Ga0059261_4117 0.31 -0.1
4,274,333 - Ga0059261_4117 0.31 +0.7
4,274,333 - Ga0059261_4117 0.31 -1.2
4,274,373 + Ga0059261_4117 0.34 +0.4
4,274,373 + Ga0059261_4117 0.34 +0.1
4,274,373 + Ga0059261_4117 0.34 +0.6
4,274,373 + Ga0059261_4117 0.34 +0.4
4,274,374 - Ga0059261_4117 0.34 +0.1
4,274,374 - Ga0059261_4117 0.34 -0.3
4,274,374 - Ga0059261_4117 0.34 +0.1
4,274,374 - +0.2
4,274,374 - Ga0059261_4117 0.34 -0.0
4,274,488 - Ga0059261_4117 0.44 +0.2
4,274,805 + Ga0059261_4117 0.70 -0.1
4,274,805 + Ga0059261_4117 0.70 -0.1
4,274,805 + -1.5
4,274,805 + Ga0059261_4117 0.70 +0.3
4,274,806 - Ga0059261_4117 0.70 +0.1
4,274,862 + Ga0059261_4117 0.74 -0.4
4,274,862 + Ga0059261_4117 0.74 -0.6
4,274,862 + Ga0059261_4117 0.74 -0.4
4,274,862 + Ga0059261_4117 0.74 +0.4
4,274,862 + Ga0059261_4117 0.74 +0.7
4,274,863 - Ga0059261_4117 0.74 -0.3
4,274,886 + Ga0059261_4117 0.76 +0.5
4,274,886 + Ga0059261_4117 0.76 +0.3
4,275,180 + -0.6
4,275,181 - +0.8
4,275,256 - +0.7
4,275,408 + Ga0059261_4118 0.15 +0.2
4,275,408 + Ga0059261_4118 0.15 -1.3
4,275,411 + Ga0059261_4118 0.15 +0.2
4,275,411 + Ga0059261_4118 0.15 -0.2
4,275,411 + Ga0059261_4118 0.15 +0.2
4,275,411 + Ga0059261_4118 0.15 -0.2
4,275,412 - Ga0059261_4118 0.15 -1.1
4,275,492 + Ga0059261_4118 0.20 +0.2
4,275,507 + Ga0059261_4118 0.21 +0.5
4,275,507 + Ga0059261_4118 0.21 -0.3
4,275,570 + Ga0059261_4118 0.25 +0.1
4,275,570 + Ga0059261_4118 0.25 -0.6
4,275,571 - Ga0059261_4118 0.25 +0.9
4,275,571 - Ga0059261_4118 0.25 -0.0
4,275,571 - Ga0059261_4118 0.25 +0.9
4,275,594 + Ga0059261_4118 0.26 -0.1
4,275,594 + Ga0059261_4118 0.26 +0.9
4,275,594 + Ga0059261_4118 0.26 +0.2
4,275,594 + Ga0059261_4118 0.26 +0.5
4,275,595 - Ga0059261_4118 0.26 +0.3
4,275,771 + Ga0059261_4118 0.38 -1.0
4,275,771 + Ga0059261_4118 0.38 +1.3
4,275,771 + Ga0059261_4118 0.38 +0.8
4,275,771 + Ga0059261_4118 0.38 +0.3
4,275,772 - Ga0059261_4118 0.38 +0.5
4,275,772 - Ga0059261_4118 0.38 +1.2
4,275,772 - Ga0059261_4118 0.38 -0.3
4,275,870 + Ga0059261_4118 0.44 +0.2
4,275,870 + Ga0059261_4118 0.44 +0.1
4,275,870 + Ga0059261_4118 0.44 +1.3
4,275,870 + Ga0059261_4118 0.44 -0.4
4,275,871 - Ga0059261_4118 0.44 +0.3
4,275,937 - Ga0059261_4118 0.48 +0.0
4,275,999 + Ga0059261_4118 0.52 -0.3
4,275,999 + Ga0059261_4118 0.52 +0.3
4,276,000 - Ga0059261_4118 0.52 +0.3
4,276,000 - Ga0059261_4118 0.52 +0.5
4,276,253 - Ga0059261_4118 0.68 -0.2
4,276,410 - Ga0059261_4118 0.78 -0.2
4,276,410 - Ga0059261_4118 0.78 +0.6
4,276,494 + Ga0059261_4118 0.83 +1.0
4,276,494 + Ga0059261_4118 0.83 +0.5
4,276,494 + Ga0059261_4118 0.83 +0.2
4,276,495 - Ga0059261_4118 0.83 +0.2
4,276,495 - Ga0059261_4118 0.83 +0.6
4,276,681 + +0.2
4,276,683 + -0.4
4,276,684 - -0.1
4,276,846 + +0.0
4,276,865 + Ga0059261_4119 0.11 -1.1
4,276,865 + Ga0059261_4119 0.11 -0.3
4,277,054 + Ga0059261_4119 0.33 -0.1
4,277,152 + Ga0059261_4119 0.44 +0.6
4,277,153 - Ga0059261_4119 0.44 -0.1
4,277,248 + Ga0059261_4119 0.56 -0.1
4,277,249 - Ga0059261_4119 0.56 -0.4
4,277,249 - Ga0059261_4119 0.56 +0.4
4,277,365 + Ga0059261_4119 0.69 +1.3
4,277,366 - Ga0059261_4119 0.69 +0.4
4,277,432 + Ga0059261_4119 0.77 +0.3
4,277,432 + Ga0059261_4119 0.77 -0.3
4,277,432 + Ga0059261_4119 0.77 +0.9
4,277,433 - Ga0059261_4119 0.77 +1.2
4,277,433 - Ga0059261_4119 0.77 +0.2
4,277,433 - Ga0059261_4119 0.77 +0.5
4,277,503 + Ga0059261_4119 0.85 -1.3
4,277,503 + Ga0059261_4119 0.85 -0.5
4,277,503 + Ga0059261_4119 0.85 +0.2
4,277,504 - Ga0059261_4119 0.85 +0.4
4,277,504 - Ga0059261_4119 0.85 +0.1
4,277,504 - Ga0059261_4119 0.85 +0.0
4,277,504 - Ga0059261_4119 0.85 +0.1
4,277,599 + +1.5
4,277,599 + -1.0
4,277,599 + -0.2
4,277,599 + +0.3
4,277,600 - +0.4

Or see this region's nucleotide sequence