Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_2736

Experiment: Zinc 1.25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_2733 and Ga0059261_2734 are separated by 18 nucleotidesGa0059261_2734 and Ga0059261_2735 overlap by 4 nucleotidesGa0059261_2735 and Ga0059261_2736 are separated by 157 nucleotidesGa0059261_2736 and Ga0059261_2737 are separated by 67 nucleotides Ga0059261_2733: Ga0059261_2733 - translation initiation factor IF-3, at 2,845,329 to 2,845,862 _2733 Ga0059261_2734: Ga0059261_2734 - hypothetical protein, at 2,845,881 to 2,846,057 _2734 Ga0059261_2735: Ga0059261_2735 - Glyoxalase-like domain, at 2,846,054 to 2,846,437 _2735 Ga0059261_2736: Ga0059261_2736 - hypothetical protein, at 2,846,595 to 2,846,966 _2736 Ga0059261_2737: Ga0059261_2737 - UTP--GlnB (protein PII) uridylyltransferase, GlnD, at 2,847,034 to 2,849,775 _2737 Position (kb) 2846 2847Strain fitness (log2 ratio) -2 -1 0 1at 2845.867 kb on - strandat 2845.883 kb on - strandat 2845.883 kb on - strandat 2846.134 kb on + strand, within Ga0059261_2735at 2846.247 kb on + strand, within Ga0059261_2735at 2846.353 kb on + strand, within Ga0059261_2735at 2846.354 kb on - strand, within Ga0059261_2735at 2846.370 kb on + strand, within Ga0059261_2735at 2846.429 kb on + strandat 2846.429 kb on + strandat 2846.430 kb on - strandat 2846.430 kb on - strandat 2846.430 kb on - strandat 2846.430 kb on - strandat 2846.468 kb on + strandat 2846.468 kb on + strandat 2846.468 kb on + strandat 2846.468 kb on + strandat 2846.468 kb on + strandat 2846.469 kb on - strandat 2846.582 kb on + strandat 2846.582 kb on + strandat 2846.582 kb on + strandat 2846.582 kb on + strandat 2846.583 kb on - strandat 2846.583 kb on - strandat 2846.583 kb on - strandat 2846.583 kb on - strandat 2846.583 kb on - strandat 2846.728 kb on + strand, within Ga0059261_2736at 2846.728 kb on + strand, within Ga0059261_2736at 2846.728 kb on + strand, within Ga0059261_2736at 2846.729 kb on - strand, within Ga0059261_2736at 2846.729 kb on - strand, within Ga0059261_2736at 2846.729 kb on - strand, within Ga0059261_2736at 2846.760 kb on + strand, within Ga0059261_2736at 2846.760 kb on + strand, within Ga0059261_2736at 2846.761 kb on - strand, within Ga0059261_2736at 2846.761 kb on - strand, within Ga0059261_2736at 2846.945 kb on + strandat 2846.945 kb on + strandat 2846.946 kb on - strandat 2846.984 kb on + strandat 2846.985 kb on - strandat 2847.146 kb on + strandat 2847.173 kb on + strandat 2847.174 kb on - strandat 2847.225 kb on - strandat 2847.569 kb on + strand, within Ga0059261_2737

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Per-strain Table

Position Strand Gene LocusTag Fraction Zinc 1.25 mM
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2,845,867 - -0.9
2,845,883 - -0.6
2,845,883 - +0.4
2,846,134 + Ga0059261_2735 0.21 -0.2
2,846,247 + Ga0059261_2735 0.50 -1.7
2,846,353 + Ga0059261_2735 0.78 +0.3
2,846,354 - Ga0059261_2735 0.78 -0.5
2,846,370 + Ga0059261_2735 0.82 +0.3
2,846,429 + +0.5
2,846,429 + +0.2
2,846,430 - -1.0
2,846,430 - -0.6
2,846,430 - -1.0
2,846,430 - -0.1
2,846,468 + -0.4
2,846,468 + -1.5
2,846,468 + -0.6
2,846,468 + +0.3
2,846,468 + +0.2
2,846,469 - -2.4
2,846,582 + -0.0
2,846,582 + +1.0
2,846,582 + -0.8
2,846,582 + +0.3
2,846,583 - -0.8
2,846,583 - -0.1
2,846,583 - -0.8
2,846,583 - +1.5
2,846,583 - +0.3
2,846,728 + Ga0059261_2736 0.36 +0.0
2,846,728 + Ga0059261_2736 0.36 -0.1
2,846,728 + Ga0059261_2736 0.36 +0.5
2,846,729 - Ga0059261_2736 0.36 +0.0
2,846,729 - Ga0059261_2736 0.36 +0.2
2,846,729 - Ga0059261_2736 0.36 -0.1
2,846,760 + Ga0059261_2736 0.44 +0.8
2,846,760 + Ga0059261_2736 0.44 -0.1
2,846,761 - Ga0059261_2736 0.45 +0.1
2,846,761 - Ga0059261_2736 0.45 +0.4
2,846,945 + -0.5
2,846,945 + +0.5
2,846,946 - +0.0
2,846,984 + +0.5
2,846,985 - +0.3
2,847,146 + -1.7
2,847,173 + -0.7
2,847,174 - +0.3
2,847,225 - +1.5
2,847,569 + Ga0059261_2737 0.20 +0.5

Or see this region's nucleotide sequence