Experiment: Zinc 1.25 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ga0059261_0991 and Ga0059261_0992 overlap by 4 nucleotides Ga0059261_0992 and Ga0059261_0993 overlap by 4 nucleotides
Ga0059261_0991: Ga0059261_0991 - Methionine synthase I (cobalamin-dependent), methyltransferase domain, at 1,028,212 to 1,029,258
_0991
Ga0059261_0992: Ga0059261_0992 - 5,10-methylenetetrahydrofolate reductase, prokaryotic form, at 1,029,255 to 1,030,172
_0992
Ga0059261_0993: Ga0059261_0993 - Methylase involved in ubiquinone/menaquinone biosynthesis, at 1,030,169 to 1,031,128
_0993
Position (kb)
1029
1030
1031 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1028.319 kb on + strand, within Ga0059261_0991 at 1028.319 kb on + strand, within Ga0059261_0991 at 1028.320 kb on - strand, within Ga0059261_0991 at 1028.320 kb on - strand, within Ga0059261_0991 at 1028.320 kb on - strand, within Ga0059261_0991 at 1028.420 kb on + strand, within Ga0059261_0991 at 1028.420 kb on + strand, within Ga0059261_0991 at 1028.420 kb on + strand, within Ga0059261_0991 at 1028.420 kb on + strand, within Ga0059261_0991 at 1028.420 kb on + strand, within Ga0059261_0991 at 1028.420 kb on + strand, within Ga0059261_0991 at 1028.421 kb on - strand, within Ga0059261_0991 at 1028.456 kb on + strand, within Ga0059261_0991 at 1028.456 kb on + strand, within Ga0059261_0991 at 1028.592 kb on + strand, within Ga0059261_0991 at 1028.783 kb on + strand, within Ga0059261_0991 at 1028.783 kb on + strand, within Ga0059261_0991 at 1028.784 kb on - strand, within Ga0059261_0991 at 1029.056 kb on + strand, within Ga0059261_0991 at 1029.056 kb on + strand, within Ga0059261_0991 at 1029.057 kb on - strand, within Ga0059261_0991 at 1029.152 kb on + strand, within Ga0059261_0991 at 1029.152 kb on + strand, within Ga0059261_0991 at 1029.152 kb on + strand, within Ga0059261_0991 at 1029.152 kb on + strand, within Ga0059261_0991 at 1029.152 kb on + strand, within Ga0059261_0991 at 1029.153 kb on - strand, within Ga0059261_0991 at 1029.153 kb on - strand, within Ga0059261_0991 at 1029.316 kb on + strand at 1029.316 kb on + strand at 1029.317 kb on - strand at 1029.317 kb on - strand at 1029.343 kb on + strand at 1029.343 kb on + strand at 1029.344 kb on - strand at 1029.344 kb on - strand at 1029.344 kb on - strand at 1029.373 kb on + strand, within Ga0059261_0992 at 1029.374 kb on - strand, within Ga0059261_0992 at 1029.374 kb on - strand, within Ga0059261_0992 at 1029.781 kb on + strand, within Ga0059261_0992 at 1029.781 kb on + strand, within Ga0059261_0992 at 1029.781 kb on + strand at 1029.781 kb on + strand, within Ga0059261_0992 at 1029.868 kb on + strand, within Ga0059261_0992 at 1029.869 kb on - strand, within Ga0059261_0992 at 1029.869 kb on - strand, within Ga0059261_0992 at 1029.957 kb on - strand, within Ga0059261_0992 at 1030.006 kb on + strand, within Ga0059261_0992 at 1030.006 kb on + strand, within Ga0059261_0992 at 1030.006 kb on + strand, within Ga0059261_0992 at 1030.510 kb on - strand, within Ga0059261_0993 at 1030.688 kb on - strand, within Ga0059261_0993 at 1031.134 kb on + strand at 1031.140 kb on + strand at 1031.141 kb on - strand at 1031.141 kb on - strand at 1031.141 kb on - strand at 1031.142 kb on + strand at 1031.142 kb on + strand at 1031.142 kb on + strand at 1031.143 kb on - strand at 1031.143 kb on - strand at 1031.143 kb on - strand at 1031.149 kb on - strand at 1031.154 kb on + strand at 1031.154 kb on + strand at 1031.154 kb on + strand at 1031.155 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Zinc 1.25 mM remove 1,028,319 + Ga0059261_0991 0.10 -0.1 1,028,319 + Ga0059261_0991 0.10 +0.2 1,028,320 - Ga0059261_0991 0.10 -0.5 1,028,320 - Ga0059261_0991 0.10 -0.3 1,028,320 - Ga0059261_0991 0.10 -0.2 1,028,420 + Ga0059261_0991 0.20 +0.1 1,028,420 + Ga0059261_0991 0.20 -1.0 1,028,420 + Ga0059261_0991 0.20 -0.6 1,028,420 + Ga0059261_0991 0.20 +0.2 1,028,420 + Ga0059261_0991 0.20 +0.7 1,028,420 + Ga0059261_0991 0.20 +1.1 1,028,421 - Ga0059261_0991 0.20 +0.2 1,028,456 + Ga0059261_0991 0.23 +0.1 1,028,456 + Ga0059261_0991 0.23 -1.4 1,028,592 + Ga0059261_0991 0.36 +1.0 1,028,783 + Ga0059261_0991 0.55 -0.0 1,028,783 + Ga0059261_0991 0.55 +1.3 1,028,784 - Ga0059261_0991 0.55 -0.6 1,029,056 + Ga0059261_0991 0.81 -0.3 1,029,056 + Ga0059261_0991 0.81 +0.3 1,029,057 - Ga0059261_0991 0.81 -0.0 1,029,152 + Ga0059261_0991 0.90 -0.3 1,029,152 + Ga0059261_0991 0.90 +0.2 1,029,152 + Ga0059261_0991 0.90 -0.0 1,029,152 + Ga0059261_0991 0.90 -0.7 1,029,152 + Ga0059261_0991 0.90 +0.6 1,029,153 - Ga0059261_0991 0.90 -0.3 1,029,153 - Ga0059261_0991 0.90 +1.4 1,029,316 + +1.4 1,029,316 + +0.1 1,029,317 - +0.2 1,029,317 - -0.0 1,029,343 + +0.4 1,029,343 + -0.7 1,029,344 - -0.5 1,029,344 - +0.9 1,029,344 - -1.4 1,029,373 + Ga0059261_0992 0.13 -0.4 1,029,374 - Ga0059261_0992 0.13 -0.2 1,029,374 - Ga0059261_0992 0.13 +1.2 1,029,781 + Ga0059261_0992 0.57 +0.8 1,029,781 + Ga0059261_0992 0.57 -0.6 1,029,781 + +1.9 1,029,781 + Ga0059261_0992 0.57 +0.2 1,029,868 + Ga0059261_0992 0.67 +0.5 1,029,869 - Ga0059261_0992 0.67 +0.7 1,029,869 - Ga0059261_0992 0.67 +0.1 1,029,957 - Ga0059261_0992 0.76 -0.4 1,030,006 + Ga0059261_0992 0.82 +1.5 1,030,006 + Ga0059261_0992 0.82 -0.2 1,030,006 + Ga0059261_0992 0.82 +0.1 1,030,510 - Ga0059261_0993 0.36 -0.7 1,030,688 - Ga0059261_0993 0.54 +0.8 1,031,134 + +0.3 1,031,140 + +0.4 1,031,141 - -0.4 1,031,141 - +0.2 1,031,141 - +0.1 1,031,142 + -1.1 1,031,142 + -0.1 1,031,142 + -0.3 1,031,143 - +0.2 1,031,143 - +0.8 1,031,143 - +0.6 1,031,149 - -0.1 1,031,154 + -1.4 1,031,154 + -0.5 1,031,154 + -2.0 1,031,155 - -1.3
Or see this region's nucleotide sequence