Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_0925

Experiment: Zinc 1.25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_0924 and Ga0059261_0925 are separated by 99 nucleotidesGa0059261_0925 and Ga0059261_0926 are separated by 142 nucleotidesGa0059261_0926 and Ga0059261_0927 are separated by 94 nucleotides Ga0059261_0924: Ga0059261_0924 - Uncharacterized protein conserved in bacteria, at 956,512 to 958,257 _0924 Ga0059261_0925: Ga0059261_0925 - Phosphoglycerate dehydrogenase and related dehydrogenases, at 958,357 to 959,292 _0925 Ga0059261_0926: Ga0059261_0926 - glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase, at 959,435 to 960,019 _0926 Ga0059261_0927: Ga0059261_0927 - Domain of unknown function (DUF333), at 960,114 to 960,347 _0927 Position (kb) 958 959 960Strain fitness (log2 ratio) -2 -1 0 1 2at 957.360 kb on + strand, within Ga0059261_0924at 957.360 kb on + strand, within Ga0059261_0924at 957.360 kb on + strand, within Ga0059261_0924at 957.360 kb on + strand, within Ga0059261_0924at 957.360 kb on + strand, within Ga0059261_0924at 957.360 kb on + strand, within Ga0059261_0924at 957.360 kb on + strand, within Ga0059261_0924at 957.360 kb on + strand, within Ga0059261_0924at 957.361 kb on - strand, within Ga0059261_0924at 957.361 kb on - strand, within Ga0059261_0924at 957.361 kb on - strand, within Ga0059261_0924at 957.361 kb on - strand, within Ga0059261_0924at 957.426 kb on + strand, within Ga0059261_0924at 957.426 kb on + strand, within Ga0059261_0924at 957.428 kb on + strand, within Ga0059261_0924at 957.428 kb on + strand, within Ga0059261_0924at 957.428 kb on + strand, within Ga0059261_0924at 957.428 kb on + strand, within Ga0059261_0924at 957.428 kb on + strand, within Ga0059261_0924at 957.428 kb on + strand, within Ga0059261_0924at 957.428 kb on + strand, within Ga0059261_0924at 957.429 kb on - strand, within Ga0059261_0924at 957.429 kb on - strand, within Ga0059261_0924at 957.429 kb on - strand, within Ga0059261_0924at 957.429 kb on - strand, within Ga0059261_0924at 957.429 kb on - strand, within Ga0059261_0924at 957.429 kb on - strand, within Ga0059261_0924at 957.524 kb on + strand, within Ga0059261_0924at 957.524 kb on + strand, within Ga0059261_0924at 957.524 kb on + strand, within Ga0059261_0924at 957.524 kb on + strand, within Ga0059261_0924at 957.525 kb on - strand, within Ga0059261_0924at 957.525 kb on - strand, within Ga0059261_0924at 957.525 kb on - strand, within Ga0059261_0924at 957.671 kb on + strand, within Ga0059261_0924at 957.671 kb on + strand, within Ga0059261_0924at 957.671 kb on + strand, within Ga0059261_0924at 957.671 kb on + strand, within Ga0059261_0924at 957.671 kb on + strand, within Ga0059261_0924at 957.671 kb on + strand, within Ga0059261_0924at 957.672 kb on - strand, within Ga0059261_0924at 957.672 kb on - strand, within Ga0059261_0924at 957.844 kb on - strand, within Ga0059261_0924at 957.845 kb on + strand, within Ga0059261_0924at 957.845 kb on + strand, within Ga0059261_0924at 957.845 kb on + strand, within Ga0059261_0924at 957.845 kb on + strand, within Ga0059261_0924at 957.845 kb on + strand, within Ga0059261_0924at 957.845 kb on + strand, within Ga0059261_0924at 957.845 kb on + strandat 957.845 kb on + strand, within Ga0059261_0924at 957.846 kb on - strand, within Ga0059261_0924at 957.846 kb on - strand, within Ga0059261_0924at 957.846 kb on - strand, within Ga0059261_0924at 957.846 kb on - strand, within Ga0059261_0924at 957.846 kb on - strand, within Ga0059261_0924at 958.246 kb on + strandat 958.246 kb on + strandat 958.247 kb on - strandat 958.247 kb on - strandat 958.247 kb on - strandat 958.247 kb on - strandat 958.247 kb on - strandat 958.346 kb on - strandat 958.561 kb on + strand, within Ga0059261_0925at 958.561 kb on + strand, within Ga0059261_0925at 958.561 kb on + strand, within Ga0059261_0925at 958.561 kb on + strand, within Ga0059261_0925at 958.561 kb on + strand, within Ga0059261_0925at 958.561 kb on + strand, within Ga0059261_0925at 958.561 kb on + strand, within Ga0059261_0925at 958.561 kb on + strand, within Ga0059261_0925at 958.561 kb on + strand, within Ga0059261_0925at 958.561 kb on + strand, within Ga0059261_0925at 958.561 kb on + strand, within Ga0059261_0925at 958.561 kb on + strand, within Ga0059261_0925at 958.561 kb on + strand, within Ga0059261_0925at 958.562 kb on - strand, within Ga0059261_0925at 958.562 kb on - strand, within Ga0059261_0925at 958.562 kb on - strand, within Ga0059261_0925at 958.562 kb on - strand, within Ga0059261_0925at 958.562 kb on - strand, within Ga0059261_0925at 958.562 kb on - strand, within Ga0059261_0925at 958.658 kb on - strand, within Ga0059261_0925at 958.658 kb on - strand, within Ga0059261_0925at 958.915 kb on + strand, within Ga0059261_0925at 958.915 kb on + strand, within Ga0059261_0925at 958.915 kb on + strand, within Ga0059261_0925at 958.915 kb on + strand, within Ga0059261_0925at 958.915 kb on + strand, within Ga0059261_0925at 958.916 kb on - strand, within Ga0059261_0925at 958.916 kb on - strand, within Ga0059261_0925at 958.916 kb on - strand, within Ga0059261_0925at 958.916 kb on - strand, within Ga0059261_0925at 958.916 kb on - strand, within Ga0059261_0925at 958.916 kb on - strand, within Ga0059261_0925at 958.916 kb on - strand, within Ga0059261_0925at 958.916 kb on - strand, within Ga0059261_0925at 959.136 kb on - strand, within Ga0059261_0925at 959.287 kb on + strandat 959.287 kb on + strandat 959.299 kb on + strandat 959.299 kb on + strandat 959.299 kb on + strandat 959.300 kb on - strandat 959.356 kb on + strandat 959.357 kb on - strandat 959.357 kb on - strandat 959.357 kb on - strandat 959.357 kb on - strandat 959.357 kb on - strandat 959.357 kb on - strandat 959.361 kb on + strandat 959.361 kb on + strandat 959.362 kb on - strandat 959.362 kb on - strandat 959.362 kb on - strandat 959.456 kb on + strandat 959.456 kb on + strandat 959.456 kb on + strandat 959.456 kb on + strandat 959.457 kb on - strandat 959.486 kb on + strandat 959.486 kb on + strandat 959.486 kb on + strandat 959.486 kb on + strandat 959.487 kb on - strandat 959.487 kb on - strandat 959.487 kb on - strandat 959.813 kb on + strand, within Ga0059261_0926at 959.813 kb on + strand, within Ga0059261_0926at 959.813 kb on + strand, within Ga0059261_0926at 959.814 kb on - strand, within Ga0059261_0926at 959.814 kb on - strand, within Ga0059261_0926at 959.814 kb on - strand, within Ga0059261_0926at 959.986 kb on + strandat 959.986 kb on + strandat 960.039 kb on - strandat 960.039 kb on - strandat 960.063 kb on + strandat 960.063 kb on + strandat 960.063 kb on + strandat 960.063 kb on + strandat 960.063 kb on + strandat 960.063 kb on + strandat 960.063 kb on + strandat 960.063 kb on + strandat 960.064 kb on - strandat 960.064 kb on - strandat 960.064 kb on - strandat 960.064 kb on - strandat 960.064 kb on - strandat 960.123 kb on - strandat 960.123 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Zinc 1.25 mM
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957,360 + Ga0059261_0924 0.49 +0.4
957,360 + Ga0059261_0924 0.49 -0.2
957,360 + Ga0059261_0924 0.49 +0.5
957,360 + Ga0059261_0924 0.49 -0.8
957,360 + Ga0059261_0924 0.49 -0.2
957,360 + Ga0059261_0924 0.49 -0.1
957,360 + Ga0059261_0924 0.49 +0.5
957,360 + Ga0059261_0924 0.49 +0.3
957,361 - Ga0059261_0924 0.49 +0.6
957,361 - Ga0059261_0924 0.49 +0.0
957,361 - Ga0059261_0924 0.49 +0.2
957,361 - Ga0059261_0924 0.49 -0.3
957,426 + Ga0059261_0924 0.52 +0.7
957,426 + Ga0059261_0924 0.52 -0.7
957,428 + Ga0059261_0924 0.52 +1.1
957,428 + Ga0059261_0924 0.52 -1.1
957,428 + Ga0059261_0924 0.52 -0.9
957,428 + Ga0059261_0924 0.52 +0.0
957,428 + Ga0059261_0924 0.52 -1.7
957,428 + Ga0059261_0924 0.52 +1.1
957,428 + Ga0059261_0924 0.52 -0.1
957,429 - Ga0059261_0924 0.53 -0.1
957,429 - Ga0059261_0924 0.53 -0.2
957,429 - Ga0059261_0924 0.53 -0.1
957,429 - Ga0059261_0924 0.53 -0.5
957,429 - Ga0059261_0924 0.53 +0.9
957,429 - Ga0059261_0924 0.53 -0.1
957,524 + Ga0059261_0924 0.58 +0.4
957,524 + Ga0059261_0924 0.58 +1.6
957,524 + Ga0059261_0924 0.58 -0.2
957,524 + Ga0059261_0924 0.58 +0.2
957,525 - Ga0059261_0924 0.58 +0.2
957,525 - Ga0059261_0924 0.58 -0.0
957,525 - Ga0059261_0924 0.58 -1.0
957,671 + Ga0059261_0924 0.66 -0.1
957,671 + Ga0059261_0924 0.66 -0.0
957,671 + Ga0059261_0924 0.66 -0.3
957,671 + Ga0059261_0924 0.66 -0.3
957,671 + Ga0059261_0924 0.66 -0.6
957,671 + Ga0059261_0924 0.66 -0.1
957,672 - Ga0059261_0924 0.66 -0.8
957,672 - Ga0059261_0924 0.66 -0.3
957,844 - Ga0059261_0924 0.76 -0.5
957,845 + Ga0059261_0924 0.76 +0.4
957,845 + Ga0059261_0924 0.76 -0.2
957,845 + Ga0059261_0924 0.76 +0.4
957,845 + Ga0059261_0924 0.76 -0.9
957,845 + Ga0059261_0924 0.76 +0.1
957,845 + Ga0059261_0924 0.76 +0.7
957,845 + +1.5
957,845 + Ga0059261_0924 0.76 -0.5
957,846 - Ga0059261_0924 0.76 -0.3
957,846 - Ga0059261_0924 0.76 -0.7
957,846 - Ga0059261_0924 0.76 -1.1
957,846 - Ga0059261_0924 0.76 -0.4
957,846 - Ga0059261_0924 0.76 +0.0
958,246 + -0.1
958,246 + -0.0
958,247 - -1.1
958,247 - -0.1
958,247 - -0.3
958,247 - +0.3
958,247 - +0.4
958,346 - -0.7
958,561 + Ga0059261_0925 0.22 +0.2
958,561 + Ga0059261_0925 0.22 -0.1
958,561 + Ga0059261_0925 0.22 -0.7
958,561 + Ga0059261_0925 0.22 -1.5
958,561 + Ga0059261_0925 0.22 +0.6
958,561 + Ga0059261_0925 0.22 +0.5
958,561 + Ga0059261_0925 0.22 +1.2
958,561 + Ga0059261_0925 0.22 -1.3
958,561 + Ga0059261_0925 0.22 +0.1
958,561 + Ga0059261_0925 0.22 +1.3
958,561 + Ga0059261_0925 0.22 +0.5
958,561 + Ga0059261_0925 0.22 +0.1
958,561 + Ga0059261_0925 0.22 +0.5
958,562 - Ga0059261_0925 0.22 +0.4
958,562 - Ga0059261_0925 0.22 +0.0
958,562 - Ga0059261_0925 0.22 +0.8
958,562 - Ga0059261_0925 0.22 -1.2
958,562 - Ga0059261_0925 0.22 +0.4
958,562 - Ga0059261_0925 0.22 -0.0
958,658 - Ga0059261_0925 0.32 -0.1
958,658 - Ga0059261_0925 0.32 -0.4
958,915 + Ga0059261_0925 0.60 -0.1
958,915 + Ga0059261_0925 0.60 +0.5
958,915 + Ga0059261_0925 0.60 -0.2
958,915 + Ga0059261_0925 0.60 +0.7
958,915 + Ga0059261_0925 0.60 +0.0
958,916 - Ga0059261_0925 0.60 +0.3
958,916 - Ga0059261_0925 0.60 +0.7
958,916 - Ga0059261_0925 0.60 -0.0
958,916 - Ga0059261_0925 0.60 +1.0
958,916 - Ga0059261_0925 0.60 -0.7
958,916 - Ga0059261_0925 0.60 +0.2
958,916 - Ga0059261_0925 0.60 +0.2
958,916 - Ga0059261_0925 0.60 -0.2
959,136 - Ga0059261_0925 0.83 -0.3
959,287 + +0.1
959,287 + +1.0
959,299 + +0.2
959,299 + -0.2
959,299 + +0.5
959,300 - +0.3
959,356 + -0.1
959,357 - +0.6
959,357 - -0.3
959,357 - -0.2
959,357 - +0.2
959,357 - -0.6
959,357 - +0.3
959,361 + -0.2
959,361 + +0.0
959,362 - -0.1
959,362 - +0.2
959,362 - -0.6
959,456 + -0.7
959,456 + -1.3
959,456 + +0.5
959,456 + +0.2
959,457 - +0.7
959,486 + +0.5
959,486 + -0.1
959,486 + +0.2
959,486 + +0.1
959,487 - +0.4
959,487 - -0.1
959,487 - -0.8
959,813 + Ga0059261_0926 0.65 +0.0
959,813 + Ga0059261_0926 0.65 +0.2
959,813 + Ga0059261_0926 0.65 -0.0
959,814 - Ga0059261_0926 0.65 +0.0
959,814 - Ga0059261_0926 0.65 -0.3
959,814 - Ga0059261_0926 0.65 +0.5
959,986 + -1.8
959,986 + +0.0
960,039 - -0.3
960,039 - +0.6
960,063 + -0.3
960,063 + -0.0
960,063 + -0.6
960,063 + -0.6
960,063 + +0.1
960,063 + -0.3
960,063 + -0.3
960,063 + +0.4
960,064 - +0.5
960,064 - -0.2
960,064 - +0.0
960,064 - -0.3
960,064 - -0.1
960,123 - +1.9
960,123 - +1.0

Or see this region's nucleotide sequence