Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_0402

Experiment: Zinc 1.25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_0401 and Ga0059261_0402 are separated by 84 nucleotidesGa0059261_0402 and Ga0059261_0403 are separated by 390 nucleotidesGa0059261_0403 and Ga0059261_0404 are separated by 141 nucleotides Ga0059261_0401: Ga0059261_0401 - Uncharacterized conserved protein related to C-terminal domain of eukaryotic chaperone, SACSIN, at 385,453 to 386,352 _0401 Ga0059261_0402: Ga0059261_0402 - Uncharacterized conserved protein, at 386,437 to 386,757 _0402 Ga0059261_0403: Ga0059261_0403 - Micrococcal nuclease (thermonuclease) homologs, at 387,148 to 387,606 _0403 Ga0059261_0404: Ga0059261_0404 - Ketosteroid isomerase homolog, at 387,748 to 388,176 _0404 Position (kb) 386 387Strain fitness (log2 ratio) -2 -1 0 1 2at 385.455 kb on - strandat 385.455 kb on - strandat 385.554 kb on - strand, within Ga0059261_0401at 385.554 kb on - strand, within Ga0059261_0401at 385.566 kb on - strand, within Ga0059261_0401at 385.580 kb on + strand, within Ga0059261_0401at 385.580 kb on + strand, within Ga0059261_0401at 385.580 kb on + strand, within Ga0059261_0401at 385.580 kb on + strand, within Ga0059261_0401at 385.580 kb on + strand, within Ga0059261_0401at 385.580 kb on + strandat 385.580 kb on + strand, within Ga0059261_0401at 385.580 kb on + strand, within Ga0059261_0401at 385.580 kb on + strand, within Ga0059261_0401at 385.581 kb on - strand, within Ga0059261_0401at 385.581 kb on - strand, within Ga0059261_0401at 385.581 kb on - strandat 385.581 kb on - strand, within Ga0059261_0401at 385.581 kb on - strand, within Ga0059261_0401at 385.581 kb on - strand, within Ga0059261_0401at 385.581 kb on - strandat 385.581 kb on - strand, within Ga0059261_0401at 385.709 kb on + strand, within Ga0059261_0401at 385.710 kb on - strand, within Ga0059261_0401at 385.739 kb on + strand, within Ga0059261_0401at 385.739 kb on + strand, within Ga0059261_0401at 385.739 kb on + strand, within Ga0059261_0401at 385.739 kb on + strand, within Ga0059261_0401at 385.739 kb on + strand, within Ga0059261_0401at 385.742 kb on - strand, within Ga0059261_0401at 385.800 kb on + strand, within Ga0059261_0401at 385.802 kb on + strand, within Ga0059261_0401at 385.802 kb on + strand, within Ga0059261_0401at 385.802 kb on + strand, within Ga0059261_0401at 385.802 kb on + strand, within Ga0059261_0401at 385.802 kb on + strand, within Ga0059261_0401at 385.803 kb on - strandat 385.856 kb on + strand, within Ga0059261_0401at 385.856 kb on + strand, within Ga0059261_0401at 385.931 kb on + strand, within Ga0059261_0401at 385.931 kb on + strand, within Ga0059261_0401at 385.932 kb on - strand, within Ga0059261_0401at 385.932 kb on - strand, within Ga0059261_0401at 385.932 kb on - strand, within Ga0059261_0401at 385.932 kb on - strand, within Ga0059261_0401at 385.957 kb on - strand, within Ga0059261_0401at 385.957 kb on - strandat 386.058 kb on - strand, within Ga0059261_0401at 386.087 kb on + strand, within Ga0059261_0401at 386.087 kb on + strand, within Ga0059261_0401at 386.088 kb on - strand, within Ga0059261_0401at 386.088 kb on - strand, within Ga0059261_0401at 386.088 kb on - strand, within Ga0059261_0401at 386.093 kb on + strand, within Ga0059261_0401at 386.093 kb on + strand, within Ga0059261_0401at 386.093 kb on + strand, within Ga0059261_0401at 386.093 kb on + strand, within Ga0059261_0401at 386.094 kb on - strand, within Ga0059261_0401at 386.144 kb on + strand, within Ga0059261_0401at 386.145 kb on - strand, within Ga0059261_0401at 386.145 kb on - strand, within Ga0059261_0401at 386.153 kb on + strand, within Ga0059261_0401at 386.153 kb on + strand, within Ga0059261_0401at 386.154 kb on - strandat 386.156 kb on + strand, within Ga0059261_0401at 386.156 kb on + strand, within Ga0059261_0401at 386.205 kb on - strand, within Ga0059261_0401at 386.205 kb on - strand, within Ga0059261_0401at 386.299 kb on - strandat 386.299 kb on - strandat 386.366 kb on + strandat 386.374 kb on + strandat 386.374 kb on + strandat 386.375 kb on - strandat 386.375 kb on - strandat 386.375 kb on - strandat 386.510 kb on + strand, within Ga0059261_0402at 386.511 kb on - strand, within Ga0059261_0402at 386.511 kb on - strand, within Ga0059261_0402at 386.511 kb on - strand, within Ga0059261_0402at 386.511 kb on - strand, within Ga0059261_0402at 386.511 kb on - strand, within Ga0059261_0402at 386.511 kb on - strand, within Ga0059261_0402at 386.558 kb on + strand, within Ga0059261_0402at 386.558 kb on + strand, within Ga0059261_0402at 386.558 kb on + strand, within Ga0059261_0402at 386.558 kb on + strand, within Ga0059261_0402at 386.558 kb on + strand, within Ga0059261_0402at 386.558 kb on + strand, within Ga0059261_0402at 386.558 kb on + strand, within Ga0059261_0402at 386.559 kb on - strand, within Ga0059261_0402at 386.559 kb on - strand, within Ga0059261_0402at 386.559 kb on - strand, within Ga0059261_0402at 386.559 kb on - strand, within Ga0059261_0402at 386.559 kb on - strandat 386.559 kb on - strand, within Ga0059261_0402at 386.559 kb on - strand, within Ga0059261_0402at 386.559 kb on - strand, within Ga0059261_0402at 386.559 kb on - strand, within Ga0059261_0402at 386.559 kb on - strand, within Ga0059261_0402at 386.630 kb on + strand, within Ga0059261_0402at 386.661 kb on + strand, within Ga0059261_0402at 386.661 kb on + strand, within Ga0059261_0402at 386.741 kb on + strandat 386.741 kb on + strandat 386.742 kb on - strandat 386.883 kb on + strandat 386.883 kb on + strandat 386.884 kb on - strandat 386.884 kb on - strandat 386.884 kb on - strandat 386.884 kb on - strandat 386.884 kb on - strandat 386.884 kb on - strandat 386.933 kb on + strandat 386.933 kb on + strandat 386.934 kb on - strandat 386.934 kb on - strandat 386.934 kb on - strandat 386.934 kb on - strandat 387.027 kb on + strandat 387.027 kb on + strandat 387.027 kb on + strandat 387.027 kb on + strandat 387.027 kb on + strandat 387.027 kb on + strandat 387.027 kb on + strandat 387.028 kb on - strandat 387.028 kb on - strandat 387.028 kb on - strandat 387.028 kb on - strandat 387.028 kb on - strandat 387.028 kb on - strandat 387.137 kb on - strandat 387.283 kb on + strandat 387.283 kb on + strand, within Ga0059261_0403at 387.283 kb on + strand, within Ga0059261_0403at 387.284 kb on - strand, within Ga0059261_0403at 387.284 kb on - strand, within Ga0059261_0403at 387.284 kb on - strand, within Ga0059261_0403at 387.300 kb on + strand, within Ga0059261_0403at 387.475 kb on + strand, within Ga0059261_0403at 387.476 kb on - strand, within Ga0059261_0403at 387.476 kb on - strandat 387.476 kb on - strand, within Ga0059261_0403at 387.476 kb on - strand, within Ga0059261_0403at 387.630 kb on + strandat 387.630 kb on + strandat 387.630 kb on + strandat 387.630 kb on + strandat 387.631 kb on - strandat 387.631 kb on - strandat 387.631 kb on - strandat 387.634 kb on + strandat 387.634 kb on + strandat 387.634 kb on + strandat 387.634 kb on + strandat 387.634 kb on + strandat 387.634 kb on + strandat 387.634 kb on + strandat 387.634 kb on + strandat 387.635 kb on - strandat 387.635 kb on - strandat 387.635 kb on - strandat 387.635 kb on - strandat 387.635 kb on - strandat 387.637 kb on - strandat 387.693 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Zinc 1.25 mM
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385,455 - -0.6
385,455 - -0.2
385,554 - Ga0059261_0401 0.11 -0.6
385,554 - Ga0059261_0401 0.11 -0.2
385,566 - Ga0059261_0401 0.13 +0.2
385,580 + Ga0059261_0401 0.14 -0.1
385,580 + Ga0059261_0401 0.14 +0.0
385,580 + Ga0059261_0401 0.14 -0.5
385,580 + Ga0059261_0401 0.14 -0.7
385,580 + Ga0059261_0401 0.14 -0.3
385,580 + +0.7
385,580 + Ga0059261_0401 0.14 +0.2
385,580 + Ga0059261_0401 0.14 +1.0
385,580 + Ga0059261_0401 0.14 -0.4
385,581 - Ga0059261_0401 0.14 -1.1
385,581 - Ga0059261_0401 0.14 -0.2
385,581 - -0.1
385,581 - Ga0059261_0401 0.14 +0.9
385,581 - Ga0059261_0401 0.14 -0.3
385,581 - Ga0059261_0401 0.14 -1.1
385,581 - +0.2
385,581 - Ga0059261_0401 0.14 -0.0
385,709 + Ga0059261_0401 0.28 -0.1
385,710 - Ga0059261_0401 0.29 +0.1
385,739 + Ga0059261_0401 0.32 +0.2
385,739 + Ga0059261_0401 0.32 -0.4
385,739 + Ga0059261_0401 0.32 +0.1
385,739 + Ga0059261_0401 0.32 +0.5
385,739 + Ga0059261_0401 0.32 -0.8
385,742 - Ga0059261_0401 0.32 -0.2
385,800 + Ga0059261_0401 0.39 -0.5
385,802 + Ga0059261_0401 0.39 -0.6
385,802 + Ga0059261_0401 0.39 +1.1
385,802 + Ga0059261_0401 0.39 -0.2
385,802 + Ga0059261_0401 0.39 +0.1
385,802 + Ga0059261_0401 0.39 -0.1
385,803 - +1.5
385,856 + Ga0059261_0401 0.45 +0.4
385,856 + Ga0059261_0401 0.45 +0.1
385,931 + Ga0059261_0401 0.53 -0.3
385,931 + Ga0059261_0401 0.53 -0.2
385,932 - Ga0059261_0401 0.53 +0.0
385,932 - Ga0059261_0401 0.53 -1.0
385,932 - Ga0059261_0401 0.53 -0.5
385,932 - Ga0059261_0401 0.53 -0.1
385,957 - Ga0059261_0401 0.56 -0.5
385,957 - +0.0
386,058 - Ga0059261_0401 0.67 +0.5
386,087 + Ga0059261_0401 0.70 -0.3
386,087 + Ga0059261_0401 0.70 +0.0
386,088 - Ga0059261_0401 0.71 -0.1
386,088 - Ga0059261_0401 0.71 -0.6
386,088 - Ga0059261_0401 0.71 +0.1
386,093 + Ga0059261_0401 0.71 -0.4
386,093 + Ga0059261_0401 0.71 -0.4
386,093 + Ga0059261_0401 0.71 +1.2
386,093 + Ga0059261_0401 0.71 +0.1
386,094 - Ga0059261_0401 0.71 +0.5
386,144 + Ga0059261_0401 0.77 -0.1
386,145 - Ga0059261_0401 0.77 +0.4
386,145 - Ga0059261_0401 0.77 -2.0
386,153 + Ga0059261_0401 0.78 -1.3
386,153 + Ga0059261_0401 0.78 +1.1
386,154 - +0.2
386,156 + Ga0059261_0401 0.78 +0.4
386,156 + Ga0059261_0401 0.78 -0.3
386,205 - Ga0059261_0401 0.84 +0.5
386,205 - Ga0059261_0401 0.84 +0.3
386,299 - +1.0
386,299 - -0.1
386,366 + -0.0
386,374 + -0.4
386,374 + -0.4
386,375 - -0.4
386,375 - +0.8
386,375 - -0.3
386,510 + Ga0059261_0402 0.23 +0.7
386,511 - Ga0059261_0402 0.23 +0.7
386,511 - Ga0059261_0402 0.23 +0.3
386,511 - Ga0059261_0402 0.23 -0.1
386,511 - Ga0059261_0402 0.23 -0.4
386,511 - Ga0059261_0402 0.23 -0.2
386,511 - Ga0059261_0402 0.23 -0.3
386,558 + Ga0059261_0402 0.38 +0.0
386,558 + Ga0059261_0402 0.38 -0.4
386,558 + Ga0059261_0402 0.38 +0.3
386,558 + Ga0059261_0402 0.38 -0.1
386,558 + Ga0059261_0402 0.38 -0.1
386,558 + Ga0059261_0402 0.38 +0.5
386,558 + Ga0059261_0402 0.38 -0.3
386,559 - Ga0059261_0402 0.38 +0.3
386,559 - Ga0059261_0402 0.38 +0.5
386,559 - Ga0059261_0402 0.38 -0.3
386,559 - Ga0059261_0402 0.38 +0.6
386,559 - +0.5
386,559 - Ga0059261_0402 0.38 -0.5
386,559 - Ga0059261_0402 0.38 +1.7
386,559 - Ga0059261_0402 0.38 +0.5
386,559 - Ga0059261_0402 0.38 -0.1
386,559 - Ga0059261_0402 0.38 +0.2
386,630 + Ga0059261_0402 0.60 +0.7
386,661 + Ga0059261_0402 0.70 +0.1
386,661 + Ga0059261_0402 0.70 +0.7
386,741 + +0.1
386,741 + -0.3
386,742 - +1.0
386,883 + +2.1
386,883 + +0.3
386,884 - -0.3
386,884 - -0.6
386,884 - +1.1
386,884 - +0.3
386,884 - -0.3
386,884 - +0.3
386,933 + -0.1
386,933 + -0.3
386,934 - +1.2
386,934 - +0.4
386,934 - -0.2
386,934 - -0.9
387,027 + +0.2
387,027 + -0.3
387,027 + -0.8
387,027 + -0.4
387,027 + +0.7
387,027 + +0.2
387,027 + -0.3
387,028 - -0.7
387,028 - -0.2
387,028 - -0.4
387,028 - -0.3
387,028 - -0.5
387,028 - +0.7
387,137 - -0.0
387,283 + +0.9
387,283 + Ga0059261_0403 0.29 +0.1
387,283 + Ga0059261_0403 0.29 -0.1
387,284 - Ga0059261_0403 0.30 -0.7
387,284 - Ga0059261_0403 0.30 +0.1
387,284 - Ga0059261_0403 0.30 -0.6
387,300 + Ga0059261_0403 0.33 +0.3
387,475 + Ga0059261_0403 0.71 +0.2
387,476 - Ga0059261_0403 0.71 -0.7
387,476 - -0.1
387,476 - Ga0059261_0403 0.71 -0.7
387,476 - Ga0059261_0403 0.71 +0.1
387,630 + +0.0
387,630 + +0.6
387,630 + +0.4
387,630 + +0.4
387,631 - -0.2
387,631 - -0.9
387,631 - -0.3
387,634 + +0.1
387,634 + +0.1
387,634 + -0.8
387,634 + -2.0
387,634 + +0.2
387,634 + -0.2
387,634 + +0.5
387,634 + +0.5
387,635 - +0.3
387,635 - +0.3
387,635 - -0.9
387,635 - +0.5
387,635 - -1.0
387,637 - -0.2
387,693 + -0.4

Or see this region's nucleotide sequence