Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_0360

Experiment: Zinc 1.25 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGa0059261_0358 and Ga0059261_0359 are separated by 77 nucleotidesGa0059261_0359 and Ga0059261_0360 are separated by 103 nucleotidesGa0059261_0360 and Ga0059261_0361 are separated by 27 nucleotides Ga0059261_0358: Ga0059261_0358 - Alpha/beta hydrolase family, at 345,703 to 346,770 _0358 Ga0059261_0359: Ga0059261_0359 - transcriptional regulator, HxlR family, at 346,848 to 347,210 _0359 Ga0059261_0360: Ga0059261_0360 - Putative NADH-flavin reductase, at 347,314 to 347,922 _0360 Ga0059261_0361: Ga0059261_0361 - conserved hypothetical protein, YceG family, at 347,950 to 348,921 _0361 Position (kb) 347 348Strain fitness (log2 ratio) -1 0 1 2at 346.416 kb on + strand, within Ga0059261_0358at 346.416 kb on + strand, within Ga0059261_0358at 346.416 kb on + strand, within Ga0059261_0358at 346.416 kb on + strand, within Ga0059261_0358at 346.416 kb on + strandat 346.416 kb on + strand, within Ga0059261_0358at 346.416 kb on + strand, within Ga0059261_0358at 346.416 kb on + strandat 346.417 kb on - strand, within Ga0059261_0358at 346.417 kb on - strand, within Ga0059261_0358at 346.417 kb on - strand, within Ga0059261_0358at 346.417 kb on - strand, within Ga0059261_0358at 346.417 kb on - strand, within Ga0059261_0358at 346.417 kb on - strand, within Ga0059261_0358at 346.418 kb on + strand, within Ga0059261_0358at 346.418 kb on + strand, within Ga0059261_0358at 346.418 kb on + strand, within Ga0059261_0358at 346.418 kb on + strand, within Ga0059261_0358at 346.418 kb on + strand, within Ga0059261_0358at 346.419 kb on - strand, within Ga0059261_0358at 346.419 kb on - strand, within Ga0059261_0358at 346.469 kb on + strand, within Ga0059261_0358at 346.469 kb on + strand, within Ga0059261_0358at 346.469 kb on + strand, within Ga0059261_0358at 346.469 kb on + strand, within Ga0059261_0358at 346.469 kb on + strand, within Ga0059261_0358at 346.469 kb on + strand, within Ga0059261_0358at 346.470 kb on - strand, within Ga0059261_0358at 346.470 kb on - strand, within Ga0059261_0358at 346.470 kb on - strand, within Ga0059261_0358at 346.521 kb on - strand, within Ga0059261_0358at 346.521 kb on - strand, within Ga0059261_0358at 346.521 kb on - strand, within Ga0059261_0358at 346.601 kb on + strand, within Ga0059261_0358at 346.601 kb on + strand, within Ga0059261_0358at 346.601 kb on + strand, within Ga0059261_0358at 346.602 kb on - strandat 346.602 kb on - strand, within Ga0059261_0358at 346.602 kb on - strand, within Ga0059261_0358at 346.602 kb on - strand, within Ga0059261_0358at 346.602 kb on - strand, within Ga0059261_0358at 346.867 kb on + strandat 346.867 kb on + strandat 346.898 kb on + strand, within Ga0059261_0359at 346.898 kb on + strand, within Ga0059261_0359at 346.899 kb on - strand, within Ga0059261_0359at 346.899 kb on - strand, within Ga0059261_0359at 346.899 kb on - strand, within Ga0059261_0359at 346.899 kb on - strand, within Ga0059261_0359at 346.899 kb on - strand, within Ga0059261_0359at 346.899 kb on - strand, within Ga0059261_0359at 346.899 kb on - strand, within Ga0059261_0359at 346.899 kb on - strand, within Ga0059261_0359at 346.899 kb on - strand, within Ga0059261_0359at 346.899 kb on - strand, within Ga0059261_0359at 346.899 kb on - strand, within Ga0059261_0359at 346.969 kb on + strand, within Ga0059261_0359at 346.969 kb on + strand, within Ga0059261_0359at 346.969 kb on + strand, within Ga0059261_0359at 346.969 kb on + strand, within Ga0059261_0359at 346.969 kb on + strand, within Ga0059261_0359at 347.191 kb on + strandat 347.191 kb on + strandat 347.191 kb on + strandat 347.191 kb on + strandat 347.191 kb on + strandat 347.191 kb on + strandat 347.192 kb on - strandat 347.192 kb on - strandat 347.192 kb on - strandat 347.192 kb on - strandat 347.192 kb on - strandat 347.192 kb on - strandat 347.192 kb on - strandat 347.192 kb on - strandat 347.192 kb on - strandat 347.231 kb on + strandat 347.231 kb on + strandat 347.231 kb on + strandat 347.231 kb on + strandat 347.232 kb on - strandat 347.232 kb on - strandat 347.232 kb on - strandat 347.232 kb on - strandat 347.232 kb on - strandat 347.232 kb on - strandat 347.737 kb on + strand, within Ga0059261_0360at 347.737 kb on + strand, within Ga0059261_0360at 347.737 kb on + strand, within Ga0059261_0360at 347.737 kb on + strand, within Ga0059261_0360at 347.737 kb on + strand, within Ga0059261_0360at 347.737 kb on + strand, within Ga0059261_0360at 347.737 kb on + strand, within Ga0059261_0360at 347.738 kb on - strand, within Ga0059261_0360at 347.738 kb on - strand, within Ga0059261_0360at 347.738 kb on - strandat 347.738 kb on - strand, within Ga0059261_0360at 347.785 kb on + strand, within Ga0059261_0360at 347.851 kb on + strand, within Ga0059261_0360at 347.852 kb on - strandat 347.852 kb on - strand, within Ga0059261_0360at 347.852 kb on - strand, within Ga0059261_0360at 347.852 kb on - strand, within Ga0059261_0360at 347.917 kb on + strandat 347.918 kb on - strandat 347.951 kb on + strandat 347.951 kb on + strandat 347.952 kb on - strandat 347.952 kb on - strandat 347.952 kb on - strandat 347.952 kb on - strandat 347.952 kb on - strandat 347.952 kb on - strandat 347.981 kb on + strandat 347.981 kb on + strandat 347.981 kb on + strandat 347.981 kb on + strandat 347.981 kb on + strandat 347.982 kb on - strandat 347.982 kb on - strandat 347.982 kb on - strandat 348.030 kb on + strandat 348.030 kb on + strandat 348.031 kb on - strandat 348.031 kb on - strandat 348.031 kb on - strandat 348.031 kb on - strandat 348.031 kb on - strandat 348.031 kb on - strandat 348.031 kb on - strandat 348.060 kb on - strand, within Ga0059261_0361at 348.060 kb on - strand, within Ga0059261_0361at 348.097 kb on + strand, within Ga0059261_0361at 348.097 kb on + strand, within Ga0059261_0361at 348.098 kb on - strand, within Ga0059261_0361at 348.152 kb on + strand, within Ga0059261_0361at 348.152 kb on + strand, within Ga0059261_0361at 348.152 kb on + strand, within Ga0059261_0361at 348.152 kb on + strand, within Ga0059261_0361at 348.152 kb on + strand, within Ga0059261_0361at 348.152 kb on + strand, within Ga0059261_0361at 348.152 kb on + strand, within Ga0059261_0361at 348.152 kb on + strand, within Ga0059261_0361at 348.153 kb on - strandat 348.153 kb on - strand, within Ga0059261_0361at 348.153 kb on - strand, within Ga0059261_0361at 348.153 kb on - strand, within Ga0059261_0361at 348.153 kb on - strand, within Ga0059261_0361at 348.153 kb on - strand, within Ga0059261_0361at 348.153 kb on - strand, within Ga0059261_0361at 348.153 kb on - strand, within Ga0059261_0361at 348.153 kb on - strand, within Ga0059261_0361at 348.161 kb on + strand, within Ga0059261_0361at 348.161 kb on + strandat 348.162 kb on - strand, within Ga0059261_0361at 348.231 kb on - strand, within Ga0059261_0361at 348.231 kb on - strand, within Ga0059261_0361at 348.231 kb on - strand, within Ga0059261_0361at 348.284 kb on + strand, within Ga0059261_0361at 348.284 kb on + strand, within Ga0059261_0361at 348.284 kb on + strand, within Ga0059261_0361at 348.285 kb on - strand, within Ga0059261_0361at 348.285 kb on - strand, within Ga0059261_0361at 348.285 kb on - strand, within Ga0059261_0361at 348.417 kb on - strand, within Ga0059261_0361at 348.417 kb on - strand, within Ga0059261_0361at 348.417 kb on - strand, within Ga0059261_0361at 348.476 kb on + strand, within Ga0059261_0361at 348.476 kb on + strand, within Ga0059261_0361at 348.477 kb on - strand, within Ga0059261_0361at 348.477 kb on - strand, within Ga0059261_0361at 348.482 kb on + strand, within Ga0059261_0361at 348.482 kb on + strand, within Ga0059261_0361at 348.482 kb on + strand, within Ga0059261_0361at 348.482 kb on + strand, within Ga0059261_0361at 348.482 kb on + strand, within Ga0059261_0361at 348.482 kb on + strand, within Ga0059261_0361at 348.482 kb on + strand, within Ga0059261_0361at 348.483 kb on - strand, within Ga0059261_0361at 348.483 kb on - strand, within Ga0059261_0361at 348.483 kb on - strand, within Ga0059261_0361at 348.483 kb on - strand, within Ga0059261_0361at 348.483 kb on - strand, within Ga0059261_0361at 348.483 kb on - strand, within Ga0059261_0361at 348.483 kb on - strand, within Ga0059261_0361at 348.483 kb on - strand, within Ga0059261_0361at 348.483 kb on - strand, within Ga0059261_0361at 348.483 kb on - strand, within Ga0059261_0361at 348.483 kb on - strand, within Ga0059261_0361at 348.639 kb on + strand, within Ga0059261_0361at 348.672 kb on - strand, within Ga0059261_0361

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Zinc 1.25 mM
remove
346,416 + Ga0059261_0358 0.67 +0.6
346,416 + Ga0059261_0358 0.67 -0.2
346,416 + Ga0059261_0358 0.67 -0.5
346,416 + Ga0059261_0358 0.67 +0.2
346,416 + -0.8
346,416 + Ga0059261_0358 0.67 +1.3
346,416 + Ga0059261_0358 0.67 -1.0
346,416 + -0.5
346,417 - Ga0059261_0358 0.67 -0.3
346,417 - Ga0059261_0358 0.67 -0.2
346,417 - Ga0059261_0358 0.67 +0.6
346,417 - Ga0059261_0358 0.67 -0.7
346,417 - Ga0059261_0358 0.67 -0.6
346,417 - Ga0059261_0358 0.67 -0.7
346,418 + Ga0059261_0358 0.67 -0.3
346,418 + Ga0059261_0358 0.67 -0.2
346,418 + Ga0059261_0358 0.67 -0.8
346,418 + Ga0059261_0358 0.67 -1.2
346,418 + Ga0059261_0358 0.67 -0.0
346,419 - Ga0059261_0358 0.67 +0.3
346,419 - Ga0059261_0358 0.67 +0.8
346,469 + Ga0059261_0358 0.72 -0.1
346,469 + Ga0059261_0358 0.72 -1.1
346,469 + Ga0059261_0358 0.72 +0.2
346,469 + Ga0059261_0358 0.72 +0.5
346,469 + Ga0059261_0358 0.72 -0.1
346,469 + Ga0059261_0358 0.72 -0.6
346,470 - Ga0059261_0358 0.72 +1.1
346,470 - Ga0059261_0358 0.72 +0.3
346,470 - Ga0059261_0358 0.72 -1.0
346,521 - Ga0059261_0358 0.77 -0.1
346,521 - Ga0059261_0358 0.77 -0.2
346,521 - Ga0059261_0358 0.77 +0.7
346,601 + Ga0059261_0358 0.84 -0.1
346,601 + Ga0059261_0358 0.84 -0.5
346,601 + Ga0059261_0358 0.84 +0.0
346,602 - +1.9
346,602 - Ga0059261_0358 0.84 +0.3
346,602 - Ga0059261_0358 0.84 +0.1
346,602 - Ga0059261_0358 0.84 +0.6
346,602 - Ga0059261_0358 0.84 -0.0
346,867 + +0.3
346,867 + -0.1
346,898 + Ga0059261_0359 0.14 -0.2
346,898 + Ga0059261_0359 0.14 -0.5
346,899 - Ga0059261_0359 0.14 -0.8
346,899 - Ga0059261_0359 0.14 +0.6
346,899 - Ga0059261_0359 0.14 +1.2
346,899 - Ga0059261_0359 0.14 +0.5
346,899 - Ga0059261_0359 0.14 +0.2
346,899 - Ga0059261_0359 0.14 +0.5
346,899 - Ga0059261_0359 0.14 +0.0
346,899 - Ga0059261_0359 0.14 +0.0
346,899 - Ga0059261_0359 0.14 -0.1
346,899 - Ga0059261_0359 0.14 +0.1
346,899 - Ga0059261_0359 0.14 +0.9
346,969 + Ga0059261_0359 0.33 +0.7
346,969 + Ga0059261_0359 0.33 -0.6
346,969 + Ga0059261_0359 0.33 -0.1
346,969 + Ga0059261_0359 0.33 +0.6
346,969 + Ga0059261_0359 0.33 +0.1
347,191 + +0.7
347,191 + +0.2
347,191 + +0.5
347,191 + +0.1
347,191 + +0.0
347,191 + -0.2
347,192 - +1.0
347,192 - -0.4
347,192 - +0.4
347,192 - +0.2
347,192 - +0.3
347,192 - -0.8
347,192 - +0.0
347,192 - +1.2
347,192 - +0.5
347,231 + +0.5
347,231 + -0.4
347,231 + +0.3
347,231 + -0.1
347,232 - +0.5
347,232 - -0.4
347,232 - -0.7
347,232 - +1.1
347,232 - -0.3
347,232 - +0.7
347,737 + Ga0059261_0360 0.69 +0.3
347,737 + Ga0059261_0360 0.69 +0.1
347,737 + Ga0059261_0360 0.69 -1.1
347,737 + Ga0059261_0360 0.69 +0.9
347,737 + Ga0059261_0360 0.69 -0.0
347,737 + Ga0059261_0360 0.69 +0.4
347,737 + Ga0059261_0360 0.69 +1.1
347,738 - Ga0059261_0360 0.70 +0.7
347,738 - Ga0059261_0360 0.70 +0.2
347,738 - -0.1
347,738 - Ga0059261_0360 0.70 +0.5
347,785 + Ga0059261_0360 0.77 -1.4
347,851 + Ga0059261_0360 0.88 +0.4
347,852 - -0.3
347,852 - Ga0059261_0360 0.88 -0.0
347,852 - Ga0059261_0360 0.88 +0.1
347,852 - Ga0059261_0360 0.88 -0.3
347,917 + +0.7
347,918 - -0.2
347,951 + -0.4
347,951 + +0.3
347,952 - +0.1
347,952 - +0.6
347,952 - -0.3
347,952 - +0.4
347,952 - +0.5
347,952 - +0.6
347,981 + -0.0
347,981 + -0.1
347,981 + -0.1
347,981 + -0.4
347,981 + -1.2
347,982 - -0.5
347,982 - -0.1
347,982 - +0.3
348,030 + -0.9
348,030 + -0.0
348,031 - -0.4
348,031 - +0.4
348,031 - -1.3
348,031 - -0.3
348,031 - +0.6
348,031 - +0.4
348,031 - +0.8
348,060 - Ga0059261_0361 0.11 -1.0
348,060 - Ga0059261_0361 0.11 +0.3
348,097 + Ga0059261_0361 0.15 -0.5
348,097 + Ga0059261_0361 0.15 +0.6
348,098 - Ga0059261_0361 0.15 +0.3
348,152 + Ga0059261_0361 0.21 -0.8
348,152 + Ga0059261_0361 0.21 -1.1
348,152 + Ga0059261_0361 0.21 +0.0
348,152 + Ga0059261_0361 0.21 +0.4
348,152 + Ga0059261_0361 0.21 -0.1
348,152 + Ga0059261_0361 0.21 +0.0
348,152 + Ga0059261_0361 0.21 -0.2
348,152 + Ga0059261_0361 0.21 +0.1
348,153 - +1.5
348,153 - Ga0059261_0361 0.21 -0.1
348,153 - Ga0059261_0361 0.21 +0.1
348,153 - Ga0059261_0361 0.21 -0.2
348,153 - Ga0059261_0361 0.21 -0.6
348,153 - Ga0059261_0361 0.21 +1.5
348,153 - Ga0059261_0361 0.21 -0.4
348,153 - Ga0059261_0361 0.21 -0.5
348,153 - Ga0059261_0361 0.21 -1.0
348,161 + Ga0059261_0361 0.22 +0.3
348,161 + -1.3
348,162 - Ga0059261_0361 0.22 -0.0
348,231 - Ga0059261_0361 0.29 +1.2
348,231 - Ga0059261_0361 0.29 +1.1
348,231 - Ga0059261_0361 0.29 +0.9
348,284 + Ga0059261_0361 0.34 +0.5
348,284 + Ga0059261_0361 0.34 -0.3
348,284 + Ga0059261_0361 0.34 -0.1
348,285 - Ga0059261_0361 0.34 -0.1
348,285 - Ga0059261_0361 0.34 -0.3
348,285 - Ga0059261_0361 0.34 -0.1
348,417 - Ga0059261_0361 0.48 +0.2
348,417 - Ga0059261_0361 0.48 +0.4
348,417 - Ga0059261_0361 0.48 +0.3
348,476 + Ga0059261_0361 0.54 -0.0
348,476 + Ga0059261_0361 0.54 -0.8
348,477 - Ga0059261_0361 0.54 +1.3
348,477 - Ga0059261_0361 0.54 -0.8
348,482 + Ga0059261_0361 0.55 +0.1
348,482 + Ga0059261_0361 0.55 -0.2
348,482 + Ga0059261_0361 0.55 +0.1
348,482 + Ga0059261_0361 0.55 +0.3
348,482 + Ga0059261_0361 0.55 -0.8
348,482 + Ga0059261_0361 0.55 +0.3
348,482 + Ga0059261_0361 0.55 -0.8
348,483 - Ga0059261_0361 0.55 +0.5
348,483 - Ga0059261_0361 0.55 -0.7
348,483 - Ga0059261_0361 0.55 +0.1
348,483 - Ga0059261_0361 0.55 +1.1
348,483 - Ga0059261_0361 0.55 +0.9
348,483 - Ga0059261_0361 0.55 +0.0
348,483 - Ga0059261_0361 0.55 -0.2
348,483 - Ga0059261_0361 0.55 -1.3
348,483 - Ga0059261_0361 0.55 +0.9
348,483 - Ga0059261_0361 0.55 +0.4
348,483 - Ga0059261_0361 0.55 -0.6
348,639 + Ga0059261_0361 0.71 +0.9
348,672 - Ga0059261_0361 0.74 -0.6

Or see this region's nucleotide sequence