Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_764

Experiment: inner cut, R2A soft agar motility assay

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_762 and Ac3H11_763 are separated by 120 nucleotidesAc3H11_763 and Ac3H11_764 are separated by 22 nucleotidesAc3H11_764 and Ac3H11_765 are separated by 269 nucleotides Ac3H11_762 - Antibiotic biosynthesis monooxygenase, at 52,659 to 52,853 _762 Ac3H11_763 - Phosphoglycolate phosphatase (EC 3.1.3.18), at 52,974 to 53,639 _763 Ac3H11_764 - Methyl-accepting chemotaxis protein I (serine chemoreceptor protein), at 53,662 to 55,311 _764 Ac3H11_765 - FIG026291: Hypothetical periplasmic protein, at 55,581 to 56,168 _765 Position (kb) 53 54 55 56Strain fitness (log2 ratio) -2 -1 0 1 2at 52.825 kb on - strand, within Ac3H11_762at 52.825 kb on - strand, within Ac3H11_762at 52.825 kb on - strand, within Ac3H11_762at 52.906 kb on + strandat 52.906 kb on + strandat 52.906 kb on + strandat 53.180 kb on + strand, within Ac3H11_763at 53.199 kb on + strand, within Ac3H11_763at 53.220 kb on + strand, within Ac3H11_763at 53.221 kb on - strand, within Ac3H11_763at 53.221 kb on - strand, within Ac3H11_763at 53.221 kb on - strand, within Ac3H11_763at 53.265 kb on + strand, within Ac3H11_763at 53.265 kb on + strand, within Ac3H11_763at 53.265 kb on + strand, within Ac3H11_763at 53.266 kb on - strand, within Ac3H11_763at 53.266 kb on - strand, within Ac3H11_763at 53.385 kb on + strand, within Ac3H11_763at 53.386 kb on - strand, within Ac3H11_763at 53.558 kb on + strand, within Ac3H11_763at 53.559 kb on - strand, within Ac3H11_763at 53.562 kb on + strand, within Ac3H11_763at 53.562 kb on + strand, within Ac3H11_763at 53.562 kb on + strand, within Ac3H11_763at 53.563 kb on - strand, within Ac3H11_763at 53.563 kb on - strand, within Ac3H11_763at 53.563 kb on - strand, within Ac3H11_763at 53.568 kb on + strand, within Ac3H11_763at 53.568 kb on + strand, within Ac3H11_763at 53.568 kb on + strand, within Ac3H11_763at 53.569 kb on - strand, within Ac3H11_763at 53.696 kb on + strandat 53.696 kb on + strandat 53.697 kb on - strandat 53.697 kb on - strandat 53.697 kb on - strandat 54.833 kb on + strand, within Ac3H11_764at 54.833 kb on + strand, within Ac3H11_764at 54.834 kb on - strand, within Ac3H11_764at 54.834 kb on - strand, within Ac3H11_764at 54.932 kb on + strand, within Ac3H11_764at 54.932 kb on + strand, within Ac3H11_764at 54.932 kb on + strand, within Ac3H11_764at 54.932 kb on + strand, within Ac3H11_764at 54.932 kb on + strand, within Ac3H11_764at 54.932 kb on + strand, within Ac3H11_764at 54.933 kb on - strand, within Ac3H11_764at 54.933 kb on - strand, within Ac3H11_764at 55.067 kb on + strand, within Ac3H11_764at 55.067 kb on + strand, within Ac3H11_764at 55.067 kb on + strand, within Ac3H11_764at 55.067 kb on + strand, within Ac3H11_764at 55.067 kb on + strand, within Ac3H11_764at 55.067 kb on + strand, within Ac3H11_764at 55.068 kb on - strand, within Ac3H11_764at 55.068 kb on - strand, within Ac3H11_764at 55.068 kb on - strand, within Ac3H11_764at 55.476 kb on + strandat 55.476 kb on + strandat 55.477 kb on - strandat 55.978 kb on + strand, within Ac3H11_765at 55.979 kb on - strand, within Ac3H11_765at 55.993 kb on + strand, within Ac3H11_765at 55.993 kb on + strand, within Ac3H11_765at 55.994 kb on - strand, within Ac3H11_765at 55.994 kb on - strand, within Ac3H11_765at 56.015 kb on - strand, within Ac3H11_765at 56.015 kb on - strand, within Ac3H11_765at 56.074 kb on + strand, within Ac3H11_765at 56.074 kb on + strand, within Ac3H11_765at 56.075 kb on - strand, within Ac3H11_765at 56.180 kb on - strandat 56.303 kb on + strandat 56.303 kb on + strandat 56.304 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction inner cut, R2A soft agar motility assay
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52,825 - Ac3H11_762 0.85 -0.4
52,825 - Ac3H11_762 0.85 +0.0
52,825 - Ac3H11_762 0.85 +0.7
52,906 + -1.0
52,906 + +0.3
52,906 + +1.2
53,180 + Ac3H11_763 0.31 -1.0
53,199 + Ac3H11_763 0.34 -0.7
53,220 + Ac3H11_763 0.37 +0.3
53,221 - Ac3H11_763 0.37 +0.9
53,221 - Ac3H11_763 0.37 -0.7
53,221 - Ac3H11_763 0.37 +2.4
53,265 + Ac3H11_763 0.44 +1.3
53,265 + Ac3H11_763 0.44 -2.0
53,265 + Ac3H11_763 0.44 +0.6
53,266 - Ac3H11_763 0.44 -1.1
53,266 - Ac3H11_763 0.44 -1.5
53,385 + Ac3H11_763 0.62 -0.2
53,386 - Ac3H11_763 0.62 -1.6
53,558 + Ac3H11_763 0.88 +1.8
53,559 - Ac3H11_763 0.88 +1.9
53,562 + Ac3H11_763 0.88 +1.2
53,562 + Ac3H11_763 0.88 +0.9
53,562 + Ac3H11_763 0.88 -0.5
53,563 - Ac3H11_763 0.88 -0.5
53,563 - Ac3H11_763 0.88 -2.4
53,563 - Ac3H11_763 0.88 -0.3
53,568 + Ac3H11_763 0.89 -0.1
53,568 + Ac3H11_763 0.89 +1.0
53,568 + Ac3H11_763 0.89 -0.9
53,569 - Ac3H11_763 0.89 +0.1
53,696 + -1.0
53,696 + -0.3
53,697 - +0.5
53,697 - +0.2
53,697 - -0.7
54,833 + Ac3H11_764 0.71 -0.7
54,833 + Ac3H11_764 0.71 -0.2
54,834 - Ac3H11_764 0.71 +1.0
54,834 - Ac3H11_764 0.71 +2.4
54,932 + Ac3H11_764 0.77 +0.0
54,932 + Ac3H11_764 0.77 +0.8
54,932 + Ac3H11_764 0.77 -0.8
54,932 + Ac3H11_764 0.77 +1.8
54,932 + Ac3H11_764 0.77 +0.2
54,932 + Ac3H11_764 0.77 +2.2
54,933 - Ac3H11_764 0.77 -2.5
54,933 - Ac3H11_764 0.77 -1.1
55,067 + Ac3H11_764 0.85 -1.7
55,067 + Ac3H11_764 0.85 +2.2
55,067 + Ac3H11_764 0.85 +1.5
55,067 + Ac3H11_764 0.85 -0.2
55,067 + Ac3H11_764 0.85 +0.7
55,067 + Ac3H11_764 0.85 +1.5
55,068 - Ac3H11_764 0.85 +2.3
55,068 - Ac3H11_764 0.85 +2.5
55,068 - Ac3H11_764 0.85 -0.3
55,476 + +0.7
55,476 + +1.2
55,477 - +1.7
55,978 + Ac3H11_765 0.68 -1.1
55,979 - Ac3H11_765 0.68 +1.0
55,993 + Ac3H11_765 0.70 -0.9
55,993 + Ac3H11_765 0.70 -1.0
55,994 - Ac3H11_765 0.70 -0.1
55,994 - Ac3H11_765 0.70 -0.0
56,015 - Ac3H11_765 0.74 -1.7
56,015 - Ac3H11_765 0.74 +0.0
56,074 + Ac3H11_765 0.84 +2.2
56,074 + Ac3H11_765 0.84 -0.6
56,075 - Ac3H11_765 0.84 +0.4
56,180 - -0.8
56,303 + +0.1
56,303 + +1.9
56,304 - -2.7

Or see this region's nucleotide sequence