Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_4901

Experiment: inner cut, R2A soft agar motility assay

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAc3H11_4899 and Ac3H11_4900 overlap by 17 nucleotidesAc3H11_4900 and Ac3H11_4901 are separated by 6 nucleotidesAc3H11_4901 and Ac3H11_4902 are separated by 160 nucleotidesAc3H11_4902 and Ac3H11_4903 overlap by 4 nucleotides Ac3H11_4899 - ABC transporter ATP-binding protein, at 65,076 to 65,870 _4899 Ac3H11_4900 - Putative amino acid ABC transporter, permease protein, at 65,854 to 66,507 _4900 Ac3H11_4901 - amino acid ABC transporter, permease protein, at 66,514 to 67,188 _4901 Ac3H11_4902 - ABC-type amino acid transport/signal transduction systems, periplasmic component/domain, at 67,349 to 68,170 _4902 Ac3H11_4903 - Transcriptional regulator, GntR family, at 68,167 to 68,961 _4903 Position (kb) 66 67 68Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 65.774 kb on - strand, within Ac3H11_4899at 65.774 kb on - strand, within Ac3H11_4899at 65.774 kb on - strand, within Ac3H11_4899at 65.774 kb on - strand, within Ac3H11_4899at 65.853 kb on - strandat 65.853 kb on - strandat 65.927 kb on + strand, within Ac3H11_4900at 65.927 kb on + strand, within Ac3H11_4900at 65.948 kb on + strand, within Ac3H11_4900at 65.948 kb on + strand, within Ac3H11_4900at 65.966 kb on + strand, within Ac3H11_4900at 65.966 kb on + strand, within Ac3H11_4900at 65.966 kb on + strand, within Ac3H11_4900at 65.966 kb on + strand, within Ac3H11_4900at 65.966 kb on + strand, within Ac3H11_4900at 65.966 kb on + strand, within Ac3H11_4900at 65.967 kb on - strand, within Ac3H11_4900at 65.967 kb on - strand, within Ac3H11_4900at 65.967 kb on - strand, within Ac3H11_4900at 65.967 kb on - strand, within Ac3H11_4900at 65.967 kb on - strand, within Ac3H11_4900at 65.967 kb on - strand, within Ac3H11_4900at 66.291 kb on - strand, within Ac3H11_4900at 66.337 kb on + strand, within Ac3H11_4900at 66.337 kb on + strand, within Ac3H11_4900at 66.337 kb on + strandat 66.337 kb on + strand, within Ac3H11_4900at 66.337 kb on + strand, within Ac3H11_4900at 66.337 kb on + strand, within Ac3H11_4900at 66.337 kb on + strand, within Ac3H11_4900at 66.338 kb on - strand, within Ac3H11_4900at 66.338 kb on - strand, within Ac3H11_4900at 66.338 kb on - strand, within Ac3H11_4900at 66.338 kb on - strand, within Ac3H11_4900at 66.341 kb on + strand, within Ac3H11_4900at 66.342 kb on - strand, within Ac3H11_4900at 66.406 kb on + strand, within Ac3H11_4900at 66.406 kb on + strand, within Ac3H11_4900at 66.515 kb on + strandat 66.515 kb on + strandat 66.515 kb on + strandat 66.515 kb on + strandat 66.584 kb on + strand, within Ac3H11_4901at 66.584 kb on + strand, within Ac3H11_4901at 66.584 kb on + strand, within Ac3H11_4901at 66.584 kb on + strand, within Ac3H11_4901at 66.653 kb on + strand, within Ac3H11_4901at 66.653 kb on + strand, within Ac3H11_4901at 66.654 kb on - strand, within Ac3H11_4901at 66.654 kb on - strand, within Ac3H11_4901at 66.867 kb on - strand, within Ac3H11_4901at 66.998 kb on + strand, within Ac3H11_4901at 66.998 kb on + strand, within Ac3H11_4901at 66.999 kb on - strand, within Ac3H11_4901at 66.999 kb on - strand, within Ac3H11_4901at 66.999 kb on - strand, within Ac3H11_4901at 66.999 kb on - strand, within Ac3H11_4901at 66.999 kb on - strand, within Ac3H11_4901at 66.999 kb on - strand, within Ac3H11_4901at 67.026 kb on + strand, within Ac3H11_4901at 67.515 kb on + strand, within Ac3H11_4902at 67.515 kb on + strand, within Ac3H11_4902at 67.515 kb on + strand, within Ac3H11_4902at 67.516 kb on - strand, within Ac3H11_4902at 67.516 kb on - strand, within Ac3H11_4902at 67.516 kb on - strand, within Ac3H11_4902at 67.785 kb on + strand, within Ac3H11_4902at 67.785 kb on + strand, within Ac3H11_4902at 67.873 kb on - strand, within Ac3H11_4902at 67.873 kb on - strand, within Ac3H11_4902at 67.873 kb on - strand, within Ac3H11_4902at 67.938 kb on + strand, within Ac3H11_4902at 67.939 kb on - strand, within Ac3H11_4902at 67.939 kb on - strand, within Ac3H11_4902at 67.939 kb on - strand, within Ac3H11_4902at 67.939 kb on - strand, within Ac3H11_4902at 67.939 kb on - strand, within Ac3H11_4902at 67.939 kb on - strand, within Ac3H11_4902at 68.171 kb on - strandat 68.171 kb on - strandat 68.183 kb on - strandat 68.183 kb on - strandat 68.183 kb on - strandat 68.186 kb on + strandat 68.186 kb on + strandat 68.187 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction inner cut, R2A soft agar motility assay
remove
65,774 - Ac3H11_4899 0.88 +0.8
65,774 - Ac3H11_4899 0.88 -0.2
65,774 - Ac3H11_4899 0.88 -2.0
65,774 - Ac3H11_4899 0.88 +0.6
65,853 - +0.6
65,853 - +0.5
65,927 + Ac3H11_4900 0.11 +1.0
65,927 + Ac3H11_4900 0.11 -1.1
65,948 + Ac3H11_4900 0.14 -1.1
65,948 + Ac3H11_4900 0.14 -0.2
65,966 + Ac3H11_4900 0.17 +0.7
65,966 + Ac3H11_4900 0.17 -1.4
65,966 + Ac3H11_4900 0.17 -0.7
65,966 + Ac3H11_4900 0.17 -1.6
65,966 + Ac3H11_4900 0.17 -0.6
65,966 + Ac3H11_4900 0.17 -1.2
65,967 - Ac3H11_4900 0.17 -0.8
65,967 - Ac3H11_4900 0.17 -0.4
65,967 - Ac3H11_4900 0.17 +0.0
65,967 - Ac3H11_4900 0.17 +1.4
65,967 - Ac3H11_4900 0.17 +0.3
65,967 - Ac3H11_4900 0.17 +0.5
66,291 - Ac3H11_4900 0.67 -0.4
66,337 + Ac3H11_4900 0.74 +0.6
66,337 + Ac3H11_4900 0.74 +2.0
66,337 + +2.6
66,337 + Ac3H11_4900 0.74 -0.6
66,337 + Ac3H11_4900 0.74 +0.6
66,337 + Ac3H11_4900 0.74 +0.5
66,337 + Ac3H11_4900 0.74 -2.0
66,338 - Ac3H11_4900 0.74 +0.4
66,338 - Ac3H11_4900 0.74 +1.6
66,338 - Ac3H11_4900 0.74 -0.6
66,338 - Ac3H11_4900 0.74 -1.2
66,341 + Ac3H11_4900 0.74 +0.3
66,342 - Ac3H11_4900 0.75 +0.6
66,406 + Ac3H11_4900 0.84 -0.3
66,406 + Ac3H11_4900 0.84 +0.1
66,515 + -1.1
66,515 + -0.5
66,515 + +0.8
66,515 + +4.8
66,584 + Ac3H11_4901 0.10 -1.6
66,584 + Ac3H11_4901 0.10 -0.9
66,584 + Ac3H11_4901 0.10 -0.0
66,584 + Ac3H11_4901 0.10 +0.9
66,653 + Ac3H11_4901 0.21 -0.4
66,653 + Ac3H11_4901 0.21 -3.0
66,654 - Ac3H11_4901 0.21 +1.1
66,654 - Ac3H11_4901 0.21 +1.0
66,867 - Ac3H11_4901 0.52 -0.8
66,998 + Ac3H11_4901 0.72 +1.2
66,998 + Ac3H11_4901 0.72 +2.5
66,999 - Ac3H11_4901 0.72 -0.4
66,999 - Ac3H11_4901 0.72 -1.7
66,999 - Ac3H11_4901 0.72 -2.9
66,999 - Ac3H11_4901 0.72 -0.4
66,999 - Ac3H11_4901 0.72 +0.4
66,999 - Ac3H11_4901 0.72 +1.6
67,026 + Ac3H11_4901 0.76 -1.8
67,515 + Ac3H11_4902 0.20 -0.5
67,515 + Ac3H11_4902 0.20 -0.8
67,515 + Ac3H11_4902 0.20 -0.8
67,516 - Ac3H11_4902 0.20 -1.0
67,516 - Ac3H11_4902 0.20 +2.1
67,516 - Ac3H11_4902 0.20 -1.0
67,785 + Ac3H11_4902 0.53 +1.6
67,785 + Ac3H11_4902 0.53 -1.4
67,873 - Ac3H11_4902 0.64 +0.3
67,873 - Ac3H11_4902 0.64 -1.1
67,873 - Ac3H11_4902 0.64 -0.6
67,938 + Ac3H11_4902 0.72 +1.6
67,939 - Ac3H11_4902 0.72 +0.2
67,939 - Ac3H11_4902 0.72 -2.2
67,939 - Ac3H11_4902 0.72 +0.4
67,939 - Ac3H11_4902 0.72 -0.8
67,939 - Ac3H11_4902 0.72 -0.1
67,939 - Ac3H11_4902 0.72 +1.6
68,171 - +0.7
68,171 - -0.0
68,183 - +0.5
68,183 - +0.8
68,183 - +1.3
68,186 + -1.3
68,186 + -1.8
68,187 - +0.8

Or see this region's nucleotide sequence