Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_3443

Experiment: inner cut, R2A soft agar motility assay

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_3441 and Ac3H11_3442 are separated by 78 nucleotidesAc3H11_3442 and Ac3H11_3443 overlap by 4 nucleotidesAc3H11_3443 and Ac3H11_3444 are separated by 89 nucleotides Ac3H11_3441 - Enamidase (EC 3.5.2.18), at 124,129 to 125,316 _3441 Ac3H11_3442 - Outer membrane lipoprotein, at 125,395 to 126,198 _3442 Ac3H11_3443 - hypothetical protein, at 126,195 to 126,407 _3443 Ac3H11_3444 - Ribonuclease BN (EC 3.1.-.-), at 126,497 to 127,495 _3444 Position (kb) 126 127Strain fitness (log2 ratio) -2 -1 0 1 2 3at 125.315 kb on - strandat 125.399 kb on + strandat 125.399 kb on + strandat 125.399 kb on + strandat 125.399 kb on + strandat 125.399 kb on + strandat 125.400 kb on - strandat 125.400 kb on - strandat 125.441 kb on + strandat 125.582 kb on + strand, within Ac3H11_3442at 125.582 kb on + strand, within Ac3H11_3442at 125.582 kb on + strand, within Ac3H11_3442at 125.582 kb on + strand, within Ac3H11_3442at 125.583 kb on - strand, within Ac3H11_3442at 125.583 kb on - strand, within Ac3H11_3442at 125.627 kb on + strand, within Ac3H11_3442at 125.627 kb on + strand, within Ac3H11_3442at 125.627 kb on + strand, within Ac3H11_3442at 125.627 kb on + strand, within Ac3H11_3442at 125.627 kb on + strand, within Ac3H11_3442at 125.628 kb on - strand, within Ac3H11_3442at 125.628 kb on - strand, within Ac3H11_3442at 125.911 kb on - strand, within Ac3H11_3442at 125.933 kb on - strand, within Ac3H11_3442at 125.933 kb on - strand, within Ac3H11_3442at 125.933 kb on - strandat 126.145 kb on + strandat 126.186 kb on + strandat 126.186 kb on + strandat 126.186 kb on + strandat 126.186 kb on + strandat 126.187 kb on - strandat 126.187 kb on - strandat 126.227 kb on + strand, within Ac3H11_3443at 126.227 kb on + strand, within Ac3H11_3443at 126.227 kb on + strand, within Ac3H11_3443at 126.227 kb on + strand, within Ac3H11_3443at 126.227 kb on + strand, within Ac3H11_3443at 126.227 kb on + strand, within Ac3H11_3443at 126.227 kb on + strand, within Ac3H11_3443at 126.227 kb on + strand, within Ac3H11_3443at 126.227 kb on + strand, within Ac3H11_3443at 126.227 kb on + strand, within Ac3H11_3443at 126.227 kb on + strand, within Ac3H11_3443at 126.228 kb on - strand, within Ac3H11_3443at 126.228 kb on - strand, within Ac3H11_3443at 126.228 kb on - strand, within Ac3H11_3443at 126.228 kb on - strand, within Ac3H11_3443at 126.295 kb on + strand, within Ac3H11_3443at 126.296 kb on - strand, within Ac3H11_3443at 126.296 kb on - strand, within Ac3H11_3443at 126.330 kb on + strand, within Ac3H11_3443at 126.341 kb on - strand, within Ac3H11_3443at 126.350 kb on + strand, within Ac3H11_3443at 126.351 kb on - strand, within Ac3H11_3443at 126.390 kb on + strandat 126.390 kb on + strandat 126.391 kb on - strandat 126.498 kb on + strandat 126.498 kb on + strandat 126.498 kb on + strandat 126.498 kb on + strandat 126.499 kb on - strandat 126.499 kb on - strandat 126.499 kb on - strandat 126.675 kb on + strand, within Ac3H11_3444at 126.675 kb on + strand, within Ac3H11_3444at 126.676 kb on - strand, within Ac3H11_3444at 126.676 kb on - strand, within Ac3H11_3444at 126.676 kb on - strand, within Ac3H11_3444at 126.706 kb on - strand, within Ac3H11_3444at 126.706 kb on - strand, within Ac3H11_3444at 126.706 kb on - strand, within Ac3H11_3444at 126.771 kb on + strand, within Ac3H11_3444at 126.999 kb on + strand, within Ac3H11_3444at 126.999 kb on + strand, within Ac3H11_3444at 126.999 kb on + strand, within Ac3H11_3444at 126.999 kb on + strand, within Ac3H11_3444at 126.999 kb on + strand, within Ac3H11_3444at 126.999 kb on + strand, within Ac3H11_3444at 127.000 kb on - strand, within Ac3H11_3444at 127.000 kb on - strand, within Ac3H11_3444at 127.000 kb on - strand, within Ac3H11_3444at 127.000 kb on - strand, within Ac3H11_3444at 127.000 kb on - strand, within Ac3H11_3444at 127.000 kb on - strand, within Ac3H11_3444at 127.000 kb on - strand, within Ac3H11_3444at 127.000 kb on - strand, within Ac3H11_3444at 127.000 kb on - strand, within Ac3H11_3444at 127.063 kb on - strand, within Ac3H11_3444at 127.063 kb on - strand, within Ac3H11_3444at 127.063 kb on - strand, within Ac3H11_3444at 127.270 kb on - strand, within Ac3H11_3444at 127.270 kb on - strand, within Ac3H11_3444at 127.342 kb on - strand, within Ac3H11_3444

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Per-strain Table

Position Strand Gene LocusTag Fraction inner cut, R2A soft agar motility assay
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125,315 - +0.3
125,399 + +0.0
125,399 + -2.0
125,399 + -2.4
125,399 + -0.0
125,399 + -1.6
125,400 - +0.8
125,400 - +1.4
125,441 + -0.2
125,582 + Ac3H11_3442 0.23 -2.0
125,582 + Ac3H11_3442 0.23 -1.9
125,582 + Ac3H11_3442 0.23 -0.9
125,582 + Ac3H11_3442 0.23 -0.2
125,583 - Ac3H11_3442 0.23 +0.1
125,583 - Ac3H11_3442 0.23 -1.3
125,627 + Ac3H11_3442 0.29 -2.6
125,627 + Ac3H11_3442 0.29 +0.0
125,627 + Ac3H11_3442 0.29 -0.3
125,627 + Ac3H11_3442 0.29 -1.6
125,627 + Ac3H11_3442 0.29 +0.6
125,628 - Ac3H11_3442 0.29 -1.2
125,628 - Ac3H11_3442 0.29 +0.6
125,911 - Ac3H11_3442 0.64 +0.8
125,933 - Ac3H11_3442 0.67 +1.1
125,933 - Ac3H11_3442 0.67 -2.3
125,933 - +1.3
126,145 + -0.9
126,186 + -0.6
126,186 + -0.8
126,186 + -0.1
126,186 + +0.3
126,187 - +1.1
126,187 - +0.0
126,227 + Ac3H11_3443 0.15 -0.0
126,227 + Ac3H11_3443 0.15 +0.2
126,227 + Ac3H11_3443 0.15 +2.2
126,227 + Ac3H11_3443 0.15 -2.2
126,227 + Ac3H11_3443 0.15 +0.0
126,227 + Ac3H11_3443 0.15 +1.0
126,227 + Ac3H11_3443 0.15 -0.2
126,227 + Ac3H11_3443 0.15 +0.7
126,227 + Ac3H11_3443 0.15 +0.3
126,227 + Ac3H11_3443 0.15 -0.5
126,227 + Ac3H11_3443 0.15 -1.7
126,228 - Ac3H11_3443 0.15 -1.3
126,228 - Ac3H11_3443 0.15 -1.0
126,228 - Ac3H11_3443 0.15 -2.2
126,228 - Ac3H11_3443 0.15 +1.4
126,295 + Ac3H11_3443 0.47 +1.2
126,296 - Ac3H11_3443 0.47 -1.7
126,296 - Ac3H11_3443 0.47 +0.4
126,330 + Ac3H11_3443 0.63 +0.1
126,341 - Ac3H11_3443 0.69 -0.2
126,350 + Ac3H11_3443 0.73 +0.1
126,351 - Ac3H11_3443 0.73 +0.6
126,390 + -1.8
126,390 + +0.3
126,391 - -2.2
126,498 + -0.9
126,498 + +0.1
126,498 + -1.2
126,498 + +2.1
126,499 - -2.1
126,499 - -1.3
126,499 - +1.3
126,675 + Ac3H11_3444 0.18 +2.6
126,675 + Ac3H11_3444 0.18 -0.7
126,676 - Ac3H11_3444 0.18 -1.4
126,676 - Ac3H11_3444 0.18 +0.1
126,676 - Ac3H11_3444 0.18 +0.7
126,706 - Ac3H11_3444 0.21 -1.5
126,706 - Ac3H11_3444 0.21 +3.2
126,706 - Ac3H11_3444 0.21 +1.3
126,771 + Ac3H11_3444 0.27 -0.6
126,999 + Ac3H11_3444 0.50 +2.0
126,999 + Ac3H11_3444 0.50 -1.9
126,999 + Ac3H11_3444 0.50 +2.4
126,999 + Ac3H11_3444 0.50 +0.7
126,999 + Ac3H11_3444 0.50 +0.8
126,999 + Ac3H11_3444 0.50 +0.1
127,000 - Ac3H11_3444 0.50 -1.5
127,000 - Ac3H11_3444 0.50 +0.6
127,000 - Ac3H11_3444 0.50 +0.0
127,000 - Ac3H11_3444 0.50 -1.9
127,000 - Ac3H11_3444 0.50 +0.8
127,000 - Ac3H11_3444 0.50 -1.1
127,000 - Ac3H11_3444 0.50 -0.7
127,000 - Ac3H11_3444 0.50 -0.6
127,000 - Ac3H11_3444 0.50 -0.0
127,063 - Ac3H11_3444 0.57 +0.2
127,063 - Ac3H11_3444 0.57 -0.6
127,063 - Ac3H11_3444 0.57 -0.3
127,270 - Ac3H11_3444 0.77 -0.3
127,270 - Ac3H11_3444 0.77 -1.9
127,342 - Ac3H11_3444 0.85 +0.0

Or see this region's nucleotide sequence