Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_2679

Experiment: inner cut, R2A soft agar motility assay

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_2677 and Ac3H11_2678 are separated by 117 nucleotidesAc3H11_2678 and Ac3H11_2679 are separated by 625 nucleotidesAc3H11_2679 and Ac3H11_2680 are separated by 125 nucleotides Ac3H11_2677 - Filamentation induced by cAMP protein Fic, at 971,630 to 973,174 _2677 Ac3H11_2678 - hypothetical protein, at 973,292 to 973,540 _2678 Ac3H11_2679 - hypothetical protein, at 974,166 to 974,468 _2679 Ac3H11_2680 - Type I secretion system, outer membrane component LapE, at 974,594 to 975,610 _2680 Position (kb) 974 975Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 973.254 kb on - strandat 973.257 kb on + strandat 973.257 kb on + strandat 973.257 kb on + strandat 973.257 kb on + strandat 973.257 kb on + strandat 973.257 kb on + strandat 973.258 kb on - strandat 973.258 kb on - strandat 973.258 kb on - strandat 973.258 kb on - strandat 973.258 kb on - strandat 973.258 kb on - strandat 973.313 kb on + strandat 973.314 kb on - strandat 973.357 kb on + strand, within Ac3H11_2678at 973.357 kb on + strand, within Ac3H11_2678at 973.357 kb on + strand, within Ac3H11_2678at 973.539 kb on - strandat 973.548 kb on + strandat 973.892 kb on + strandat 973.893 kb on - strandat 973.893 kb on - strandat 973.893 kb on - strandat 974.035 kb on - strandat 974.058 kb on + strandat 974.059 kb on - strandat 974.059 kb on - strandat 974.059 kb on - strandat 974.232 kb on + strand, within Ac3H11_2679at 974.232 kb on + strand, within Ac3H11_2679at 974.232 kb on + strand, within Ac3H11_2679at 974.232 kb on + strand, within Ac3H11_2679at 974.232 kb on + strand, within Ac3H11_2679at 974.233 kb on - strand, within Ac3H11_2679at 974.233 kb on - strand, within Ac3H11_2679at 974.233 kb on - strand, within Ac3H11_2679at 974.233 kb on - strand, within Ac3H11_2679at 974.331 kb on + strand, within Ac3H11_2679at 974.331 kb on + strand, within Ac3H11_2679at 974.331 kb on + strand, within Ac3H11_2679at 974.331 kb on + strand, within Ac3H11_2679at 974.332 kb on - strand, within Ac3H11_2679at 974.484 kb on - strandat 974.517 kb on + strandat 974.518 kb on - strandat 974.518 kb on - strandat 974.518 kb on - strandat 974.609 kb on + strandat 974.609 kb on + strandat 974.609 kb on + strandat 974.609 kb on + strandat 974.610 kb on - strandat 974.678 kb on + strandat 974.746 kb on + strand, within Ac3H11_2680at 974.755 kb on + strand, within Ac3H11_2680at 974.755 kb on + strandat 974.773 kb on + strand, within Ac3H11_2680at 974.773 kb on + strand, within Ac3H11_2680at 974.774 kb on - strand, within Ac3H11_2680at 974.816 kb on + strand, within Ac3H11_2680at 974.894 kb on + strand, within Ac3H11_2680at 974.906 kb on - strand, within Ac3H11_2680at 974.909 kb on + strand, within Ac3H11_2680at 974.910 kb on - strand, within Ac3H11_2680at 974.910 kb on - strand, within Ac3H11_2680at 974.910 kb on - strand, within Ac3H11_2680at 974.910 kb on - strand, within Ac3H11_2680at 974.910 kb on - strand, within Ac3H11_2680at 974.935 kb on - strand, within Ac3H11_2680at 974.961 kb on + strand, within Ac3H11_2680at 974.962 kb on - strand, within Ac3H11_2680at 975.212 kb on - strand, within Ac3H11_2680at 975.231 kb on + strand, within Ac3H11_2680at 975.232 kb on - strand, within Ac3H11_2680at 975.232 kb on - strand, within Ac3H11_2680at 975.232 kb on - strand, within Ac3H11_2680at 975.312 kb on + strand, within Ac3H11_2680at 975.312 kb on + strand, within Ac3H11_2680at 975.312 kb on + strand, within Ac3H11_2680at 975.312 kb on + strand, within Ac3H11_2680at 975.312 kb on + strand, within Ac3H11_2680at 975.312 kb on + strand, within Ac3H11_2680at 975.312 kb on + strand, within Ac3H11_2680at 975.312 kb on + strand, within Ac3H11_2680at 975.312 kb on + strand, within Ac3H11_2680at 975.313 kb on - strand, within Ac3H11_2680at 975.313 kb on - strand, within Ac3H11_2680at 975.313 kb on - strand, within Ac3H11_2680at 975.313 kb on - strand, within Ac3H11_2680at 975.313 kb on - strand, within Ac3H11_2680at 975.313 kb on - strand, within Ac3H11_2680at 975.313 kb on - strand, within Ac3H11_2680at 975.313 kb on - strand, within Ac3H11_2680at 975.313 kb on - strand, within Ac3H11_2680at 975.430 kb on - strand, within Ac3H11_2680

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Per-strain Table

Position Strand Gene LocusTag Fraction inner cut, R2A soft agar motility assay
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973,254 - +0.5
973,257 + -0.6
973,257 + +0.1
973,257 + +1.0
973,257 + -2.7
973,257 + +0.5
973,257 + +2.2
973,258 - +0.4
973,258 - +0.4
973,258 - +2.4
973,258 - -0.8
973,258 - -2.4
973,258 - +0.0
973,313 + +0.0
973,314 - -2.4
973,357 + Ac3H11_2678 0.26 -0.0
973,357 + Ac3H11_2678 0.26 +1.2
973,357 + Ac3H11_2678 0.26 -1.0
973,539 - -0.8
973,548 + +1.1
973,892 + +2.2
973,893 - -3.4
973,893 - -0.0
973,893 - +1.1
974,035 - +0.9
974,058 + -1.9
974,059 - +1.4
974,059 - -1.5
974,059 - -1.0
974,232 + Ac3H11_2679 0.22 +0.6
974,232 + Ac3H11_2679 0.22 +0.0
974,232 + Ac3H11_2679 0.22 -1.8
974,232 + Ac3H11_2679 0.22 +0.1
974,232 + Ac3H11_2679 0.22 -2.5
974,233 - Ac3H11_2679 0.22 -0.6
974,233 - Ac3H11_2679 0.22 +0.1
974,233 - Ac3H11_2679 0.22 +0.4
974,233 - Ac3H11_2679 0.22 -1.8
974,331 + Ac3H11_2679 0.54 +0.7
974,331 + Ac3H11_2679 0.54 +2.6
974,331 + Ac3H11_2679 0.54 +0.9
974,331 + Ac3H11_2679 0.54 +0.3
974,332 - Ac3H11_2679 0.55 -0.6
974,484 - -0.7
974,517 + +0.4
974,518 - -1.7
974,518 - -0.8
974,518 - +2.2
974,609 + -2.8
974,609 + -0.2
974,609 + +0.5
974,609 + +0.7
974,610 - -1.1
974,678 + +0.6
974,746 + Ac3H11_2680 0.15 -1.6
974,755 + Ac3H11_2680 0.16 -3.1
974,755 + -0.3
974,773 + Ac3H11_2680 0.18 +0.2
974,773 + Ac3H11_2680 0.18 -0.3
974,774 - Ac3H11_2680 0.18 -0.6
974,816 + Ac3H11_2680 0.22 -0.1
974,894 + Ac3H11_2680 0.29 -0.3
974,906 - Ac3H11_2680 0.31 -1.1
974,909 + Ac3H11_2680 0.31 +0.2
974,910 - Ac3H11_2680 0.31 +0.6
974,910 - Ac3H11_2680 0.31 +2.0
974,910 - Ac3H11_2680 0.31 +0.7
974,910 - Ac3H11_2680 0.31 -2.4
974,910 - Ac3H11_2680 0.31 -0.8
974,935 - Ac3H11_2680 0.34 +0.1
974,961 + Ac3H11_2680 0.36 -1.5
974,962 - Ac3H11_2680 0.36 -1.0
975,212 - Ac3H11_2680 0.61 +1.8
975,231 + Ac3H11_2680 0.63 -0.1
975,232 - Ac3H11_2680 0.63 +0.2
975,232 - Ac3H11_2680 0.63 +1.7
975,232 - Ac3H11_2680 0.63 -1.1
975,312 + Ac3H11_2680 0.71 -0.3
975,312 + Ac3H11_2680 0.71 -2.2
975,312 + Ac3H11_2680 0.71 +1.1
975,312 + Ac3H11_2680 0.71 +0.2
975,312 + Ac3H11_2680 0.71 +1.4
975,312 + Ac3H11_2680 0.71 +0.4
975,312 + Ac3H11_2680 0.71 -1.6
975,312 + Ac3H11_2680 0.71 +0.5
975,312 + Ac3H11_2680 0.71 +0.3
975,313 - Ac3H11_2680 0.71 +0.4
975,313 - Ac3H11_2680 0.71 -1.7
975,313 - Ac3H11_2680 0.71 -2.5
975,313 - Ac3H11_2680 0.71 -2.3
975,313 - Ac3H11_2680 0.71 +0.3
975,313 - Ac3H11_2680 0.71 -0.8
975,313 - Ac3H11_2680 0.71 +1.0
975,313 - Ac3H11_2680 0.71 -1.2
975,313 - Ac3H11_2680 0.71 +2.5
975,430 - Ac3H11_2680 0.82 -2.1

Or see this region's nucleotide sequence