Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_2557

Experiment: inner cut, R2A soft agar motility assay

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_2555 and Ac3H11_2556 are separated by 31 nucleotidesAc3H11_2556 and Ac3H11_2557 are separated by 76 nucleotidesAc3H11_2557 and Ac3H11_2558 are separated by 39 nucleotides Ac3H11_2555 - ABC transporter for L-Histidine, periplasmic substrate-binding component 1 (from data), at 832,352 to 833,101 _2555 Ac3H11_2556 - Transcriptional regulator, IclR family, at 833,133 to 833,909 _2556 Ac3H11_2557 - Urocanate hydratase (EC 4.2.1.49) (from data), at 833,986 to 835,710 _2557 Ac3H11_2558 - Histidine ammonia-lyase (EC 4.3.1.3) (from data), at 835,750 to 837,288 _2558 Position (kb) 833 834 835 836Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 833.392 kb on + strand, within Ac3H11_2556at 833.392 kb on + strand, within Ac3H11_2556at 833.392 kb on + strand, within Ac3H11_2556at 833.392 kb on + strand, within Ac3H11_2556at 833.743 kb on + strand, within Ac3H11_2556at 833.889 kb on - strandat 833.897 kb on - strandat 833.897 kb on - strandat 833.897 kb on - strandat 833.914 kb on - strandat 833.965 kb on + strandat 833.987 kb on + strandat 833.987 kb on + strandat 833.988 kb on - strandat 833.988 kb on - strandat 833.988 kb on - strandat 834.222 kb on + strand, within Ac3H11_2557at 834.222 kb on + strand, within Ac3H11_2557at 834.611 kb on + strand, within Ac3H11_2557at 834.611 kb on + strand, within Ac3H11_2557at 834.612 kb on - strand, within Ac3H11_2557at 834.612 kb on - strand, within Ac3H11_2557at 834.612 kb on - strand, within Ac3H11_2557at 834.612 kb on - strand, within Ac3H11_2557at 834.612 kb on - strand, within Ac3H11_2557at 834.689 kb on + strand, within Ac3H11_2557at 834.689 kb on + strand, within Ac3H11_2557at 834.689 kb on + strand, within Ac3H11_2557at 834.843 kb on - strand, within Ac3H11_2557at 835.043 kb on + strand, within Ac3H11_2557at 835.043 kb on + strand, within Ac3H11_2557at 835.043 kb on + strand, within Ac3H11_2557at 835.044 kb on - strand, within Ac3H11_2557at 835.044 kb on - strand, within Ac3H11_2557at 835.193 kb on + strand, within Ac3H11_2557at 835.226 kb on + strand, within Ac3H11_2557at 835.226 kb on + strand, within Ac3H11_2557at 835.226 kb on + strand, within Ac3H11_2557at 835.226 kb on + strand, within Ac3H11_2557at 835.227 kb on - strand, within Ac3H11_2557at 835.227 kb on - strand, within Ac3H11_2557at 835.227 kb on - strand, within Ac3H11_2557at 835.259 kb on + strand, within Ac3H11_2557at 835.259 kb on + strand, within Ac3H11_2557at 835.260 kb on - strand, within Ac3H11_2557at 835.260 kb on - strand, within Ac3H11_2557at 835.289 kb on + strand, within Ac3H11_2557at 835.289 kb on + strand, within Ac3H11_2557at 835.289 kb on + strand, within Ac3H11_2557at 835.290 kb on - strand, within Ac3H11_2557at 835.290 kb on - strand, within Ac3H11_2557at 835.290 kb on - strand, within Ac3H11_2557at 835.481 kb on + strand, within Ac3H11_2557at 835.481 kb on + strand, within Ac3H11_2557at 835.481 kb on + strand, within Ac3H11_2557at 835.481 kb on + strand, within Ac3H11_2557at 835.482 kb on - strand, within Ac3H11_2557at 835.482 kb on - strand, within Ac3H11_2557at 835.482 kb on - strand, within Ac3H11_2557at 835.482 kb on - strand, within Ac3H11_2557at 835.520 kb on + strand, within Ac3H11_2557at 835.520 kb on + strand, within Ac3H11_2557at 835.521 kb on - strand, within Ac3H11_2557at 835.562 kb on - strandat 835.562 kb on - strandat 835.562 kb on - strandat 835.842 kb on - strandat 835.842 kb on - strandat 835.842 kb on - strandat 835.859 kb on + strandat 836.015 kb on + strand, within Ac3H11_2558at 836.015 kb on + strand, within Ac3H11_2558at 836.016 kb on - strand, within Ac3H11_2558at 836.016 kb on - strand, within Ac3H11_2558at 836.340 kb on + strand, within Ac3H11_2558at 836.438 kb on + strand, within Ac3H11_2558at 836.439 kb on - strand, within Ac3H11_2558

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Per-strain Table

Position Strand Gene LocusTag Fraction inner cut, R2A soft agar motility assay
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833,392 + Ac3H11_2556 0.33 -1.2
833,392 + Ac3H11_2556 0.33 +0.2
833,392 + Ac3H11_2556 0.33 +0.8
833,392 + Ac3H11_2556 0.33 -0.8
833,743 + Ac3H11_2556 0.79 +0.2
833,889 - +0.6
833,897 - +1.5
833,897 - +0.6
833,897 - -0.1
833,914 - +0.0
833,965 + -0.4
833,987 + -1.3
833,987 + +0.6
833,988 - -0.1
833,988 - +0.1
833,988 - +0.7
834,222 + Ac3H11_2557 0.14 +2.5
834,222 + Ac3H11_2557 0.14 -0.2
834,611 + Ac3H11_2557 0.36 +1.7
834,611 + Ac3H11_2557 0.36 +0.7
834,612 - Ac3H11_2557 0.36 -0.1
834,612 - Ac3H11_2557 0.36 -2.6
834,612 - Ac3H11_2557 0.36 -0.7
834,612 - Ac3H11_2557 0.36 +0.5
834,612 - Ac3H11_2557 0.36 +0.9
834,689 + Ac3H11_2557 0.41 -1.4
834,689 + Ac3H11_2557 0.41 -0.6
834,689 + Ac3H11_2557 0.41 -1.4
834,843 - Ac3H11_2557 0.50 -0.3
835,043 + Ac3H11_2557 0.61 +0.5
835,043 + Ac3H11_2557 0.61 -2.1
835,043 + Ac3H11_2557 0.61 -0.5
835,044 - Ac3H11_2557 0.61 +0.1
835,044 - Ac3H11_2557 0.61 -2.2
835,193 + Ac3H11_2557 0.70 -1.3
835,226 + Ac3H11_2557 0.72 -1.0
835,226 + Ac3H11_2557 0.72 +0.6
835,226 + Ac3H11_2557 0.72 +1.4
835,226 + Ac3H11_2557 0.72 -2.9
835,227 - Ac3H11_2557 0.72 -0.7
835,227 - Ac3H11_2557 0.72 -0.5
835,227 - Ac3H11_2557 0.72 +1.5
835,259 + Ac3H11_2557 0.74 -1.1
835,259 + Ac3H11_2557 0.74 -1.9
835,260 - Ac3H11_2557 0.74 -1.0
835,260 - Ac3H11_2557 0.74 -0.5
835,289 + Ac3H11_2557 0.76 -2.6
835,289 + Ac3H11_2557 0.76 +0.1
835,289 + Ac3H11_2557 0.76 +0.7
835,290 - Ac3H11_2557 0.76 -1.5
835,290 - Ac3H11_2557 0.76 +0.5
835,290 - Ac3H11_2557 0.76 -0.5
835,481 + Ac3H11_2557 0.87 -0.2
835,481 + Ac3H11_2557 0.87 +0.0
835,481 + Ac3H11_2557 0.87 -1.9
835,481 + Ac3H11_2557 0.87 -0.5
835,482 - Ac3H11_2557 0.87 +0.1
835,482 - Ac3H11_2557 0.87 -0.3
835,482 - Ac3H11_2557 0.87 -1.8
835,482 - Ac3H11_2557 0.87 -0.1
835,520 + Ac3H11_2557 0.89 +0.2
835,520 + Ac3H11_2557 0.89 -0.6
835,521 - Ac3H11_2557 0.89 -1.5
835,562 - +2.0
835,562 - -2.2
835,562 - -1.2
835,842 - -2.8
835,842 - -0.0
835,842 - +0.2
835,859 + -1.9
836,015 + Ac3H11_2558 0.17 +2.4
836,015 + Ac3H11_2558 0.17 +0.9
836,016 - Ac3H11_2558 0.17 +0.5
836,016 - Ac3H11_2558 0.17 +0.2
836,340 + Ac3H11_2558 0.38 +1.1
836,438 + Ac3H11_2558 0.45 -0.6
836,439 - Ac3H11_2558 0.45 -2.1

Or see this region's nucleotide sequence