Experiment: inner cut, R2A soft agar motility assay
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ac3H11_2192 and Ac3H11_2193 are separated by 289 nucleotides Ac3H11_2193 and Ac3H11_2194 are separated by 70 nucleotides Ac3H11_2194 and Ac3H11_2195 are separated by 145 nucleotides
Ac3H11_2192 - FIG000557: hypothetical protein co-occurring with RecR, at 422,095 to 422,943
_2192
Ac3H11_2193 - UPF0311 protein RPA1785, at 423,233 to 423,616
_2193
Ac3H11_2194 - putative exported protein, at 423,687 to 424,688
_2194
Ac3H11_2195 - Chlorogenate esterase, at 424,834 to 426,528
_2195
Position (kb) 423
424
425 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 422.732 kb on + strand, within Ac3H11_2192 at 422.733 kb on - strand, within Ac3H11_2192 at 422.819 kb on + strand, within Ac3H11_2192 at 423.082 kb on - strand at 423.127 kb on + strand at 423.127 kb on + strand at 423.127 kb on + strand at 423.127 kb on + strand at 423.127 kb on + strand at 423.127 kb on + strand at 423.127 kb on + strand at 423.128 kb on - strand at 423.128 kb on - strand at 423.128 kb on - strand at 423.128 kb on - strand at 423.128 kb on - strand at 423.132 kb on + strand at 423.132 kb on + strand at 423.132 kb on + strand at 423.132 kb on + strand at 423.133 kb on - strand at 423.139 kb on + strand at 423.139 kb on + strand at 423.139 kb on + strand at 423.139 kb on + strand at 423.139 kb on + strand at 423.139 kb on + strand at 423.139 kb on + strand at 423.140 kb on - strand at 423.140 kb on - strand at 423.140 kb on - strand at 423.140 kb on - strand at 423.140 kb on - strand at 423.140 kb on - strand at 423.140 kb on - strand at 423.140 kb on - strand at 423.140 kb on - strand at 423.368 kb on + strand, within Ac3H11_2193 at 423.368 kb on + strand, within Ac3H11_2193 at 423.368 kb on + strand, within Ac3H11_2193 at 423.368 kb on + strand, within Ac3H11_2193 at 423.369 kb on - strand, within Ac3H11_2193 at 423.369 kb on - strand, within Ac3H11_2193 at 423.401 kb on + strand, within Ac3H11_2193 at 423.401 kb on + strand, within Ac3H11_2193 at 423.401 kb on + strand, within Ac3H11_2193 at 423.401 kb on + strand, within Ac3H11_2193 at 423.401 kb on + strand, within Ac3H11_2193 at 423.401 kb on + strand, within Ac3H11_2193 at 423.402 kb on - strand, within Ac3H11_2193 at 423.402 kb on - strand, within Ac3H11_2193 at 423.402 kb on - strand, within Ac3H11_2193 at 423.402 kb on - strand, within Ac3H11_2193 at 423.402 kb on - strand, within Ac3H11_2193 at 423.402 kb on - strand, within Ac3H11_2193 at 423.402 kb on - strand, within Ac3H11_2193 at 423.402 kb on - strand, within Ac3H11_2193 at 423.488 kb on + strand, within Ac3H11_2193 at 423.488 kb on + strand, within Ac3H11_2193 at 423.488 kb on + strand, within Ac3H11_2193 at 423.488 kb on + strand, within Ac3H11_2193 at 423.488 kb on + strand, within Ac3H11_2193 at 423.489 kb on - strand, within Ac3H11_2193 at 423.576 kb on - strand, within Ac3H11_2193 at 423.589 kb on - strand at 423.668 kb on + strand at 423.668 kb on + strand at 423.668 kb on + strand at 423.668 kb on + strand at 423.668 kb on + strand at 423.668 kb on + strand at 423.668 kb on + strand at 423.668 kb on + strand at 423.668 kb on + strand at 423.669 kb on - strand at 423.669 kb on - strand at 423.669 kb on - strand at 423.669 kb on - strand at 423.669 kb on - strand at 423.976 kb on - strand, within Ac3H11_2194 at 424.026 kb on + strand, within Ac3H11_2194 at 424.026 kb on + strand, within Ac3H11_2194 at 424.027 kb on - strand, within Ac3H11_2194 at 424.027 kb on - strand, within Ac3H11_2194 at 424.027 kb on - strand, within Ac3H11_2194 at 424.266 kb on + strand, within Ac3H11_2194 at 424.267 kb on - strand, within Ac3H11_2194 at 425.000 kb on + strand at 425.044 kb on + strand, within Ac3H11_2195 at 425.044 kb on + strand, within Ac3H11_2195 at 425.044 kb on + strand, within Ac3H11_2195 at 425.044 kb on + strand, within Ac3H11_2195 at 425.044 kb on + strand, within Ac3H11_2195 at 425.045 kb on - strand, within Ac3H11_2195 at 425.045 kb on - strand, within Ac3H11_2195 at 425.045 kb on - strand, within Ac3H11_2195 at 425.045 kb on - strand, within Ac3H11_2195 at 425.045 kb on - strand, within Ac3H11_2195 at 425.045 kb on - strand, within Ac3H11_2195 at 425.045 kb on - strand, within Ac3H11_2195 at 425.045 kb on - strand, within Ac3H11_2195 at 425.045 kb on - strand, within Ac3H11_2195 at 425.045 kb on - strand, within Ac3H11_2195 at 425.158 kb on + strand, within Ac3H11_2195 at 425.158 kb on + strand, within Ac3H11_2195 at 425.158 kb on + strand, within Ac3H11_2195 at 425.159 kb on - strand, within Ac3H11_2195 at 425.389 kb on + strand, within Ac3H11_2195 at 425.389 kb on + strand, within Ac3H11_2195 at 425.389 kb on + strand, within Ac3H11_2195 at 425.389 kb on + strand, within Ac3H11_2195 at 425.389 kb on + strand, within Ac3H11_2195 at 425.389 kb on + strand, within Ac3H11_2195 at 425.389 kb on + strand, within Ac3H11_2195 at 425.390 kb on - strand, within Ac3H11_2195 at 425.390 kb on - strand, within Ac3H11_2195 at 425.390 kb on - strand, within Ac3H11_2195 at 425.390 kb on - strand, within Ac3H11_2195 at 425.390 kb on - strand, within Ac3H11_2195 at 425.398 kb on + strand, within Ac3H11_2195 at 425.399 kb on - strand, within Ac3H11_2195 at 425.443 kb on + strand, within Ac3H11_2195 at 425.443 kb on + strand, within Ac3H11_2195 at 425.444 kb on - strand, within Ac3H11_2195 at 425.444 kb on - strand, within Ac3H11_2195 at 425.467 kb on + strand, within Ac3H11_2195 at 425.467 kb on + strand, within Ac3H11_2195 at 425.467 kb on + strand, within Ac3H11_2195 at 425.467 kb on + strand, within Ac3H11_2195 at 425.467 kb on + strand, within Ac3H11_2195 at 425.467 kb on + strand, within Ac3H11_2195 at 425.468 kb on - strand, within Ac3H11_2195 at 425.468 kb on - strand, within Ac3H11_2195 at 425.468 kb on - strand, within Ac3H11_2195 at 425.468 kb on - strand, within Ac3H11_2195 at 425.530 kb on + strand, within Ac3H11_2195 at 425.530 kb on + strand, within Ac3H11_2195 at 425.531 kb on - strand, within Ac3H11_2195 at 425.531 kb on - strand, within Ac3H11_2195 at 425.531 kb on - strand, within Ac3H11_2195
Per-strain Table
Position Strand Gene LocusTag Fraction inner cut, R2A soft agar motility assay remove 422,732 + Ac3H11_2192 0.75 +0.1 422,733 - Ac3H11_2192 0.75 -1.3 422,819 + Ac3H11_2192 0.85 +0.1 423,082 - +0.7 423,127 + +0.9 423,127 + -2.1 423,127 + +1.3 423,127 + +0.5 423,127 + +0.3 423,127 + +0.1 423,127 + -0.1 423,128 - -0.7 423,128 - +0.1 423,128 - +1.0 423,128 - +2.2 423,128 - -1.0 423,132 + -2.4 423,132 + -0.1 423,132 + -2.1 423,132 + +1.0 423,133 - +0.4 423,139 + +0.5 423,139 + +0.2 423,139 + -1.8 423,139 + +1.0 423,139 + -0.1 423,139 + +0.6 423,139 + +2.7 423,140 - -0.6 423,140 - -0.2 423,140 - -1.7 423,140 - +2.3 423,140 - +0.9 423,140 - -0.9 423,140 - +1.1 423,140 - -0.0 423,140 - +0.6 423,368 + Ac3H11_2193 0.35 -0.6 423,368 + Ac3H11_2193 0.35 -2.7 423,368 + Ac3H11_2193 0.35 -1.5 423,368 + Ac3H11_2193 0.35 +0.9 423,369 - Ac3H11_2193 0.35 +1.0 423,369 - Ac3H11_2193 0.35 -0.0 423,401 + Ac3H11_2193 0.44 -0.6 423,401 + Ac3H11_2193 0.44 -0.7 423,401 + Ac3H11_2193 0.44 +0.7 423,401 + Ac3H11_2193 0.44 +0.5 423,401 + Ac3H11_2193 0.44 -0.5 423,401 + Ac3H11_2193 0.44 -2.6 423,402 - Ac3H11_2193 0.44 -2.1 423,402 - Ac3H11_2193 0.44 +0.5 423,402 - Ac3H11_2193 0.44 +0.6 423,402 - Ac3H11_2193 0.44 +0.5 423,402 - Ac3H11_2193 0.44 -0.3 423,402 - Ac3H11_2193 0.44 +0.5 423,402 - Ac3H11_2193 0.44 -0.7 423,402 - Ac3H11_2193 0.44 -0.9 423,488 + Ac3H11_2193 0.66 -2.7 423,488 + Ac3H11_2193 0.66 -0.2 423,488 + Ac3H11_2193 0.66 +3.1 423,488 + Ac3H11_2193 0.66 +0.5 423,488 + Ac3H11_2193 0.66 +0.5 423,489 - Ac3H11_2193 0.67 -0.9 423,576 - Ac3H11_2193 0.89 -0.2 423,589 - -0.3 423,668 + +1.3 423,668 + -0.3 423,668 + -0.4 423,668 + +0.4 423,668 + +0.1 423,668 + +3.9 423,668 + +1.5 423,668 + +0.9 423,668 + +0.4 423,669 - +1.2 423,669 - -2.9 423,669 - -0.1 423,669 - -0.5 423,669 - +1.2 423,976 - Ac3H11_2194 0.29 +1.1 424,026 + Ac3H11_2194 0.34 -0.4 424,026 + Ac3H11_2194 0.34 -1.8 424,027 - Ac3H11_2194 0.34 +0.6 424,027 - Ac3H11_2194 0.34 -1.2 424,027 - Ac3H11_2194 0.34 +0.5 424,266 + Ac3H11_2194 0.58 -1.6 424,267 - Ac3H11_2194 0.58 -1.3 425,000 + -1.8 425,044 + Ac3H11_2195 0.12 -1.2 425,044 + Ac3H11_2195 0.12 -0.9 425,044 + Ac3H11_2195 0.12 +0.2 425,044 + Ac3H11_2195 0.12 -0.9 425,044 + Ac3H11_2195 0.12 -0.9 425,045 - Ac3H11_2195 0.12 +0.2 425,045 - Ac3H11_2195 0.12 +0.2 425,045 - Ac3H11_2195 0.12 +0.8 425,045 - Ac3H11_2195 0.12 +0.7 425,045 - Ac3H11_2195 0.12 -3.2 425,045 - Ac3H11_2195 0.12 +1.4 425,045 - Ac3H11_2195 0.12 +3.9 425,045 - Ac3H11_2195 0.12 +0.2 425,045 - Ac3H11_2195 0.12 -1.0 425,045 - Ac3H11_2195 0.12 +0.2 425,158 + Ac3H11_2195 0.19 +0.2 425,158 + Ac3H11_2195 0.19 +1.1 425,158 + Ac3H11_2195 0.19 +0.0 425,159 - Ac3H11_2195 0.19 +0.5 425,389 + Ac3H11_2195 0.33 -0.1 425,389 + Ac3H11_2195 0.33 +1.7 425,389 + Ac3H11_2195 0.33 -1.5 425,389 + Ac3H11_2195 0.33 +0.4 425,389 + Ac3H11_2195 0.33 +0.1 425,389 + Ac3H11_2195 0.33 +1.2 425,389 + Ac3H11_2195 0.33 -0.1 425,390 - Ac3H11_2195 0.33 -0.7 425,390 - Ac3H11_2195 0.33 +0.1 425,390 - Ac3H11_2195 0.33 +1.4 425,390 - Ac3H11_2195 0.33 +0.7 425,390 - Ac3H11_2195 0.33 +0.1 425,398 + Ac3H11_2195 0.33 +0.4 425,399 - Ac3H11_2195 0.33 +0.1 425,443 + Ac3H11_2195 0.36 +1.5 425,443 + Ac3H11_2195 0.36 +1.4 425,444 - Ac3H11_2195 0.36 +0.4 425,444 - Ac3H11_2195 0.36 -0.2 425,467 + Ac3H11_2195 0.37 -2.2 425,467 + Ac3H11_2195 0.37 -1.2 425,467 + Ac3H11_2195 0.37 +0.5 425,467 + Ac3H11_2195 0.37 +0.4 425,467 + Ac3H11_2195 0.37 +1.2 425,467 + Ac3H11_2195 0.37 +0.6 425,468 - Ac3H11_2195 0.37 -0.0 425,468 - Ac3H11_2195 0.37 -0.7 425,468 - Ac3H11_2195 0.37 -0.6 425,468 - Ac3H11_2195 0.37 +0.9 425,530 + Ac3H11_2195 0.41 +1.2 425,530 + Ac3H11_2195 0.41 -1.3 425,531 - Ac3H11_2195 0.41 +1.4 425,531 - Ac3H11_2195 0.41 -1.7 425,531 - Ac3H11_2195 0.41 -0.1
Or see this region's nucleotide sequence